Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002321

Physical Location & Seq

Genomic Coordinates Reverse (-)

45951862 .. 45961989

Gene Structure 10128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGGGAACCTTGTTGAGCAGGACCACCATCAAAACAATAACATCGACAAGTTTGGTCCCTTCTCGACGCATTTTCAGAAAGACACAGTGCTTAAAAATCAAAAGAATAACATGGTGATGGGGCACATTGAAAATGGCAGTGCTGAGCTGCAGGACAAGTTAAAGCCATTGGACGAGGATTTGAAAATTGAAAATTTTGGCCCTTCGTTGGATGAAGATGGCATTATTCTTCCAGTAGAGGGTTCCATGACAGTTTCAACAACAACAAAGACTAGGGACCCAGATATTATTGAGAAGGCTAGGGAGCTTACTGAACTTTTGTCATTATCTGTTCCAGTGTATGAGCACAACCTTACCAAGAAGCTATTTGACCAAGGTGGATATAGATCTATCATGGAGGCATCAGTATTCATGAAAACCTCATTTGATTTTCATGAACATATAACTACAAAGTTTGTGGAAGCACTGCATCAGATACAAGATTCAGATATAGAGGCGATTGCAGATAAGCTCAGGTCTTCGGATTCTCTAGAAGTGCATGTTAATGCAGAAGAAACCCTTTGTGCTATAACAAGGCTTGCTCCACCTGGACTTGCTACTAAAATCTGTAATCCAAGTTTTATACAAAGATTGCTTCAGCAGGCTGTGGAGGACTCTCAACGAAAATCTGTTCTCACTGGCTCATTATCGGTTTGCATCTCTTTGTTAGACCGTGAGAGGGAAGCTTTGAGAACAAATGCATGTATCAGTGAACACCAGCCTGCTCATGGATCTACAGTTACTGTTAATAACGAGATTGTTGTGGCCATGCTCGACAGCCTAGGTGATTTGCTGAAACTTTTAGATGTTTCATCGGCGGACAATATGTTGTTAACTACATATGGCAAGTTACAGCCACCTCTTGGAAAACATCGTTTGAAGATTGTAGAGTTCATTTCAGTATTACTGTCAGTTGGTAGTCAAGCTGCTGAGAAGGAATTGATTCGTATTGCAGCAATACAAAAAGTCTTAGACTTGTTTTTTAGGTACCCATATAACAATTTTTTGCATTACCACATAGAGAACATAATCGTATCATGTTTGGAAAGCAAAAATGGGCCTCTTGTACAACATCTTCTTCGTGAATGTGATCTTGTTGGAAAAATACTTGAAGCAGAAAAGAATTTCACACTGGCCGCTGTTTCATTTACGCCGACAATTCCTGCTCAGGGTAGATCCCTACCCAGGAAAGGCAATATTGGACATTTAACACGTATATCCAACAAAATCATTCAACTGGGAAATCACAATAGGGAGATTCAGGCATATCTGCAGGAAAACAGTGTCTGGACTGAATGGCATGCAGAAGTCCTATTAAAGCGTAATGCAGTGGAGAATGTCTCCCAGTGGGCGTGCGGGCGGCCTATATCATCTCTGGATCGTGGACACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAPS

Protein Analysis

478

Amino Acids

53.37

Weight (kDa)

5.89

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	79 - 115	1.4e-07	Krr1 KH1 domain
SAPS	PF04499	156 - 460	2.4e-46	SIT4 phosphatase-associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30470 AT1G30470 AT1G30470 AT2G28360 AT3G45190 AT3G45190
fragaria_vesca	FvH4_3g10000 FvH4_3g10000
malus_domestica	MD05G1274100.v1.1 MD10G1253800.v1.1
prunus_persica	Prupe.4G089700_v2.0.a1
pyrus_communis	pycom05g25550 pycom09g07810 pycom09g07840 pycom10g20940
rosa_chinensis	RchiOBHm_Chr5g0015881 RchiOBHm_Chr5g0049281 RchiOBHm_Chr5g0049291
rosa_laevigata	RLG00000034610
rosa_multiflora	Rmu_sc0000012.1_g000009 Rmu_sc0009674.1_g000007 Rmu_sc0012428.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032370 Rroxscaffold_1G00032380 Rroxscaffold_1G00060720
rosa_rugosa	Rorug05G0029700 Rorug05G0029800 Rorug05G0247400 Rorug05G0247500 Rorug05G0247600
rosa_samantha	Rh5AG123400 Rh5AG324000 Rh5BG122300 Rh5BG334900 Rh5BG335000 Rh5CG133500 Rh5CG360000 Rh5DG121700 Rh5DG347000 Rh5DG347100
rosa_wichuraiana	Rw5G010650 Rw5G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1026
AccB1I	GGYRCC	1 cut(s)	1026
AccB7I	CCANNNNNTGG	1 cut(s)	902
AciI	CCGC	4 cut(s)	857, 1176, 1395, 1399
AclWI	GGATC	3 cut(s)	778, 1209, 1425
AcoI	YGGCCR	2 cut(s)	804, 1173
AcsI	RAATTY	2 cut(s)	193, 1162
AcuI	CTGAAG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	1028, 1107
AfiI	CCNNNNNNNGG	8 cut(s)	208, 239, 718, 767, 902, 1208, 1224, 1229
AflIII	ACRYGT	1 cut(s)	1250
AgsI	TTSAA	7 cut(s)	131, 184, 191, 258, 919, 1151, 1274
AjnI	CCWGG	2 cut(s)	586, 1223
AluBI	AGCT	6 cut(s)	148, 307, 364, 511, 725, 965
AluI	AGCT	6 cut(s)	148, 307, 364, 511, 725, 965
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	1384
AlwI	GGATC	3 cut(s)	778, 1209, 1425
AlwNI	CAGNNNCTG	2 cut(s)	782, 1326
AoxI	GGCC	5 cut(s)	199, 804, 1097, 1173, 1400
ApeKI	GCWGC	3 cut(s)	148, 965, 992
ApoI	RAATTY	2 cut(s)	193, 1162
Asp700I	GAANNNNTTC	1 cut(s)	981
Asp718I	GGTACC	1 cut(s)	1026
AspA2I	CCTAGG	1 cut(s)	820
AspS9I	GGNCC	5 cut(s)	22, 56, 200, 277, 1097
AsuHPI	GGTGA	2 cut(s)	127, 836
AvaII	GGWCC	3 cut(s)	22, 56, 277
AvrII	CCTAGG	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	806
BanI	GGYRCC	1 cut(s)	1026
BarI	GAAGNNNNNNTAC	2 cut(s)	1098, 1130
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	135, 952, 1004
BccI	CCATC	3 cut(s)	36, 112, 212
BciT130I	CCWGG	2 cut(s)	588, 1225
BcoDI	GTCTC	1 cut(s)	1384
BfaI	CTAG	4 cut(s)	273, 300, 530, 821
BfmI	CTRYAG	3 cut(s)	149, 774, 1310
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	5 cut(s)	149, 966, 993, 1176, 1400
BlnI	CCTAGG	1 cut(s)	820
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	5 cut(s)	150, 967, 994, 1177, 1401
Bme1390I	CCNGG	2 cut(s)	588, 1225
Bme18I	GGWCC	3 cut(s)	22, 56, 277
BmgT120I	GGNCC	5 cut(s)	22, 56, 200, 277, 1097
BmiI	GGNNCC	6 cut(s)	8, 58, 244, 278, 279, 1028
BmrFI	CCNGG	2 cut(s)	588, 1225
BmrI	ACTGGG	2 cut(s)	1286, 1378
BmsI	GCATC	3 cut(s)	410, 478, 705
BmuI	ACTGGG	2 cut(s)	1286, 1378
BpiI	GAAGAC	1 cut(s)	510
BplI	GAGNNNNNCTC	2 cut(s)	1364, 1396
Bpu10I	CCTNAGC	2 cut(s)	512, 1206
Bpu1102I	GCTNAGC	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	1253
BsaBI	GATNNNNATC	1 cut(s)	385
BsaJI	CCNNGG	3 cut(s)	373, 820, 1223
Bsc4I	CCNNNNNNNGG	8 cut(s)	208, 239, 718, 767, 902, 1208, 1224, 1229
Bse1I	ACTGG	6 cut(s)	233, 335, 682, 1176, 1281, 1384
Bse8I	GATNNNNATC	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	588, 1225
BseDI	CCNNGG	3 cut(s)	373, 820, 1223
BseGI	GGATG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	385
BseLI	CCNNNNNNNGG	8 cut(s)	208, 239, 718, 767, 902, 1208, 1224, 1229
BseMII	CTCAG	4 cut(s)	135, 526, 960, 1220
BseNI	ACTGG	6 cut(s)	233, 335, 682, 1176, 1281, 1384
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	135, 952, 1004
BshFI	GGCC	5 cut(s)	201, 806, 1099, 1175, 1402
BshNI	GGYRCC	1 cut(s)	1026
BsiHKAI	GWGCWC	1 cut(s)	348
BslFI	GGGAC	2 cut(s)	42, 290
BslI	CCNNNNNNNGG	8 cut(s)	208, 239, 718, 767, 902, 1208, 1224, 1229
BsmAI	GTCTC	1 cut(s)	1384
BsmFI	GGGAC	2 cut(s)	42, 290
BsnI	GGCC	5 cut(s)	201, 806, 1099, 1175, 1402
Bsp1286I	GDGCHC	2 cut(s)	126, 348
Bsp1407I	TGTACA	1 cut(s)	1105
Bsp143I	GATC	5 cut(s)	386, 770, 1129, 1214, 1417
Bsp1720I	GCTNAGC	1 cut(s)	144
BspACI	CCGC	4 cut(s)	857, 1176, 1395, 1399
BspANI	GGCC	5 cut(s)	201, 806, 1099, 1175, 1402
BspCNI	CTCAG	4 cut(s)	136, 525, 961, 1219
BspHI	TCATGA	2 cut(s)	411, 433
BspLI	GGNNCC	6 cut(s)	8, 58, 244, 278, 279, 1028
BspMAI	CTGCAG	2 cut(s)	153, 1314
BspPI	GGATC	3 cut(s)	778, 1209, 1425
BspT107I	GGYRCC	1 cut(s)	1026
BsrGI	TGTACA	1 cut(s)	1105
BsrI	ACTGG	6 cut(s)	233, 335, 682, 1176, 1281, 1384
BssECI	CCNNGG	3 cut(s)	373, 820, 1223
BssMI	GATC	5 cut(s)	386, 770, 1129, 1214, 1417
BssT1I	CCWWGG	2 cut(s)	373, 820
Bst2UI	CCWGG	2 cut(s)	588, 1225
Bst4CI	ACNGT	7 cut(s)	88, 253, 713, 778, 784, 948, 1322
BstAUI	TGTACA	1 cut(s)	1105
BstBAI	YACGTR	1 cut(s)	1253
BstC8I	GCNNGC	6 cut(s)	579, 642, 762, 1341, 1393, 1397
BstDEI	CTNAG	5 cut(s)	144, 512, 969, 1009, 1206
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	5 cut(s)	389, 773, 1132, 1217, 1420
BstMAI	GTCTC	1 cut(s)	1384
BstMBI	GATC	5 cut(s)	386, 770, 1129, 1214, 1417
BstNI	CCWGG	2 cut(s)	588, 1225
BstNSI	RCATGY	3 cut(s)	542, 744, 1343
BstSCI	CCNGG	2 cut(s)	586, 1223
BstSFI	CTRYAG	3 cut(s)	149, 774, 1310
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	135, 952, 1004
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	3 cut(s)	386, 770, 1214
BstYI	RGATCY	3 cut(s)	386, 770, 1214
BsuRI	GGCC	5 cut(s)	201, 806, 1099, 1175, 1402
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	3 cut(s)	145, 464, 1374
Cac8I	GCNNGC	6 cut(s)	579, 642, 762, 1341, 1393, 1397
CaiI	CAGNNNCTG	2 cut(s)	782, 1326
CciI	TCATGA	2 cut(s)	411, 433
Cfr13I	GGNCC	5 cut(s)	22, 56, 200, 277, 1097
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	1027, 1106
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviQI	GTAC	2 cut(s)	1027, 1106
DdeI	CTNAG	5 cut(s)	144, 512, 969, 1009, 1206
DpnI	GATC	5 cut(s)	388, 772, 1131, 1216, 1419
DpnII	GATC	5 cut(s)	386, 770, 1129, 1214, 1417
EaeI	YGGCCR	2 cut(s)	804, 1173
EciI	GGCGGA	1 cut(s)	872
Eco130I	CCWWGG	2 cut(s)	373, 820
Eco47I	GGWCC	3 cut(s)	22, 56, 277
Eco57I	CTGAAG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	586, 1223
EcoT14I	CCWWGG	2 cut(s)	373, 820
EcoT22I	ATGCAT	1 cut(s)	742
ErhI	CCWWGG	2 cut(s)	373, 820
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FaqI	GGGAC	2 cut(s)	42, 290
FauI	CCCGC	1 cut(s)	1388
FauNDI	CATATG	1 cut(s)	880
Fnu4HI	GCNGC	5 cut(s)	149, 966, 993, 1176, 1400
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	5 cut(s)	149, 966, 993, 1176, 1400
FspBI	CTAG	4 cut(s)	273, 300, 530, 821
GluI	GCNGC	5 cut(s)	149, 966, 993, 1176, 1400
HaeIII	GGCC	5 cut(s)	201, 806, 1099, 1175, 1402
HgaI	GACGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	5 cut(s)	482, 524, 653, 982, 1297
HpaI	GTTAAC	1 cut(s)	873
HphI	GGTGA	2 cut(s)	127, 836
Hpy166II	GTNNAC	3 cut(s)	752, 873, 1424
Hpy188I	TCNGA	4 cut(s)	78, 474, 487, 523
Hpy188III	TCNNGA	7 cut(s)	64, 412, 434, 530, 1121, 1327, 1415
Hpy8I	GTNNAC	3 cut(s)	752, 873, 1424
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	70, 213, 289, 967
HpyCH4III	ACNGT	7 cut(s)	88, 253, 713, 778, 784, 948, 1322
HpyCH4IV	ACGT	1 cut(s)	1252
HpyF3I	CTNAG	5 cut(s)	144, 512, 969, 1009, 1206
HpySE526I	ACGT	1 cut(s)	1252
KflI	GGGWCCC	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	1030
KspAI	GTTAAC	1 cut(s)	873
Kzo9I	GATC	5 cut(s)	386, 770, 1129, 1214, 1417
LmnI	GCTCC	2 cut(s)	304, 586
Lsp1109I	GCAGC	3 cut(s)	135, 952, 1004
LweI	GCATC	3 cut(s)	410, 478, 705
MaeI	CTAG	4 cut(s)	273, 300, 530, 821
MaeII	ACGT	1 cut(s)	1252
MaeIII	GTNAC	2 cut(s)	778, 888
MalI	GATC	5 cut(s)	388, 772, 1131, 1216, 1419
MboI	GATC	5 cut(s)	386, 770, 1129, 1214, 1417
MboII	GAAGA	7 cut(s)	221, 227, 510, 563, 931, 1106, 1109
MflI	RGATCY	3 cut(s)	386, 770, 1214
MhlI	GDGCHC	2 cut(s)	126, 348
MlsI	TGGCCA	1 cut(s)	806
MluCI	AATT	6 cut(s)	186, 193, 977, 1039, 1162, 1197
MluNI	TGGCCA	1 cut(s)	806
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	3 cut(s)	189, 1117, 1284
MnlI	CCTC	9 cut(s)	169, 232, 391, 430, 487, 643, 711, 909, 1110
Mox20I	TGGCCA	1 cut(s)	806
Mph1103I	ATGCAT	1 cut(s)	742
MroXI	GAANNNNTTC	1 cut(s)	981
MscI	TGGCCA	1 cut(s)	806
MseI	TTAA	8 cut(s)	93, 161, 543, 786, 872, 1247, 1355, 1432
MslI	CAYNNNNRTG	2 cut(s)	116, 543
Msp20I	TGGCCA	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	1178
MspR9I	CCNGG	2 cut(s)	588, 1225
MvaI	CCWGG	2 cut(s)	588, 1225
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	5 cut(s)	386, 770, 1129, 1214, 1417
NlaIV	GGNNCC	6 cut(s)	8, 58, 244, 278, 279, 1028
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	3 cut(s)	542, 744, 1343
PaeI	GCATGC	1 cut(s)	1343
PagI	TCATGA	2 cut(s)	411, 433
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	4 cut(s)	482, 524, 982, 1297
PflMI	CCANNNNNTGG	1 cut(s)	902
PkrI	GCNGC	5 cut(s)	150, 967, 994, 1177, 1401
PleI	GAGTC	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	647
Ppu21I	YACGTR	1 cut(s)	1253
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	586, 1223
PspGI	CCWGG	2 cut(s)	586, 1223
PspN4I	GGNNCC	6 cut(s)	8, 58, 244, 278, 279, 1028
PspPI	GGNCC	5 cut(s)	22, 56, 200, 277, 1097
PspPPI	RGGWCCY	1 cut(s)	277
PstI	CTGCAG	2 cut(s)	153, 1314
PstNI	CAGNNNCTG	2 cut(s)	782, 1326
PsuI	RGATCY	3 cut(s)	386, 770, 1214
RsaI	GTAC	2 cut(s)	1028, 1107
RsaNI	GTAC	2 cut(s)	1027, 1106
RseI	CAYNNNNRTG	2 cut(s)	116, 543
SaqAI	TTAA	8 cut(s)	93, 161, 543, 786, 872, 1247, 1355, 1432
SatI	GCNGC	5 cut(s)	149, 966, 993, 1176, 1400
Sau3AI	GATC	5 cut(s)	386, 770, 1129, 1214, 1417
Sau96I	GGNCC	5 cut(s)	22, 56, 200, 277, 1097
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	588, 1225
SduI	GDGCHC	2 cut(s)	126, 348
SfaNI	GCATC	3 cut(s)	410, 478, 705
SfcI	CTRYAG	3 cut(s)	149, 774, 1310
SinI	GGWCC	3 cut(s)	22, 56, 277
SmiMI	CAYNNNNRTG	2 cut(s)	116, 543
SphI	GCATGC	1 cut(s)	1343
Sse9I	AATT	6 cut(s)	186, 193, 977, 1039, 1162, 1197
SsiI	CCGC	4 cut(s)	857, 1176, 1395, 1399
SspI	AATATT	1 cut(s)	1237
SspMI	CTAG	4 cut(s)	273, 300, 530, 821
StyD4I	CCNGG	2 cut(s)	586, 1223
StyI	CCWWGG	2 cut(s)	373, 820
TaaI	ACNGT	7 cut(s)	88, 253, 713, 778, 784, 948, 1322
TaiI	ACGT	1 cut(s)	1255
TaqI	TCGA	3 cut(s)	45, 65, 813
TasI	AATT	6 cut(s)	186, 193, 977, 1039, 1162, 1197
TatI	WGTACW	1 cut(s)	1105
TauI	GCSGC	2 cut(s)	1178, 1402
TfiI	GAWTC	4 cut(s)	482, 524, 982, 1297
Tru1I	TTAA	8 cut(s)	93, 161, 543, 786, 872, 1247, 1355, 1432
Tru9I	TTAA	8 cut(s)	93, 161, 543, 786, 872, 1247, 1355, 1432
TseI	GCWGC	3 cut(s)	148, 965, 992
TspDTI	ATGAA	8 cut(s)	228, 400, 422, 428, 450, 840, 922, 1173
Van91I	CCANNNNNTGG	1 cut(s)	902
VpaK11BI	GGWCC	3 cut(s)	22, 56, 277
XapI	RAATTY	2 cut(s)	193, 1162
XbaI	TCTAGA	1 cut(s)	529
XceI	RCATGY	3 cut(s)	542, 744, 1343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XmaJI	CCTAGG	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	4 cut(s)	273, 300, 530, 821
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.