Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002321

Physical Location & Seq

Genomic Coordinates Reverse (-)

47420801 .. 47427248

Gene Structure 6448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG347100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGACGATGGTGAACCTTGTTGAGGAGGAGGACCACCATCAAAACAATAACATCGACAAGTTTGGTCCTTTCTCGACGCATTTCCAGAAGGACACAGTGCTTAAAAATCAAAATAATAACATGGCGATTGGGAACATTGAGAACAGCAGTGCTGAGCTGCAGGACAAGTTAAAGCCATTGGACGAGGATATGAAGATTGGGAATTTCGGCCCTTCGTTGGAAGAAGATGGCATTATTCTTCCAGTCACCTCTTTCTCTACTTTCTTTAAGAAAAATGAAGAAATATATCTGCAAAACGCTTGGCCTATGGTGAAATCTGCTTTAGAAGACTATGGTATTTCGTGCGCCCTGAATCTGGTTGAGGGTTCCATGACAGTTTCAACAACAACAAAGACTAGGGACCCAGATATTATTGAAAAGGCCAAGGAGCTTACTGAACTTTTGTCATTATATGTTCCCGCAGATGAGGCAATAAGAATACTGGATGCCAAAATGAAATGTGATTTCATTGAGATTGGAACAAAGAGAGGTGGGCTATGCGTAAAATATGGGATCGACATGGAGCAATTTCGTGAACGGTGGGAACGTTTCCTAGGCCCCAAGAACACCGGCTTGAAGACAATTCAGCATCTGACAGGCTGCAGTGTTTTCTTTCATGGAAATTTCACTGTTGCTGTAATTGGTAAATTTGAAGGATTAAAGATGGTCAGGAGGATTGTGGTAGACTGCATTCGAAATAAAATGCGTCCTAGTGTCCATATCAGAAGGCTTCGGATGAATCAAAATGAGCACAAACTTACGAAGAAGCTATTTGATCAAGGTGGATATAGATCTGTCATGGAGGCATCAGTATTCATGAAAACCTCATTTGATTTTCATGAACATATATCTACAAAGTTTGTGGAAGCACTGCATCAGATACATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

35.39

Weight (kDa)

6.61

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	84 - 162	1.6e-18	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	186 - 261	8e-18	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30470 AT1G30470 AT1G30470 AT2G28360 AT3G45190 AT3G45190
fragaria_vesca	FvH4_3g10000 FvH4_3g10000
malus_domestica	MD05G1274100.v1.1 MD10G1253800.v1.1
prunus_persica	Prupe.4G089700_v2.0.a1
pyrus_communis	pycom05g25550 pycom09g07810 pycom09g07840 pycom10g20940
rosa_chinensis	RchiOBHm_Chr5g0015881 RchiOBHm_Chr5g0049281 RchiOBHm_Chr5g0049291
rosa_laevigata	RLG00000034610
rosa_multiflora	Rmu_sc0000012.1_g000009 Rmu_sc0009674.1_g000007 Rmu_sc0012428.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032370 Rroxscaffold_1G00032380 Rroxscaffold_1G00060720
rosa_rugosa	Rorug05G0029700 Rorug05G0029800 Rorug05G0247400 Rorug05G0247500 Rorug05G0247600
rosa_samantha	Rh5AG123400 Rh5AG324000 Rh5BG122300 Rh5BG334900 Rh5BG335000 Rh5CG133500 Rh5CG360000 Rh5DG121700 Rh5DG347000 Rh5DG347100
rosa_wichuraiana	Rw5G010650 Rw5G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	1 cut(s)	459
AclI	AACGTT	1 cut(s)	586
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	3 cut(s)	202, 661, 686
AfiI	CCNNNNNNNGG	3 cut(s)	22, 217, 355
AgsI	TTSAA	4 cut(s)	381, 416, 616, 692
AluBI	AGCT	3 cut(s)	157, 430, 808
AluI	AGCT	3 cut(s)	157, 430, 808
Alw21I	GWGCWC	1 cut(s)	792
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	4 cut(s)	208, 302, 420, 595
ApeKI	GCWGC	2 cut(s)	157, 639
ApoI	RAATTY	3 cut(s)	202, 661, 686
AspA2I	CCTAGG	1 cut(s)	592
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	5 cut(s)	31, 65, 209, 400, 596
AsuHPI	GGTGA	3 cut(s)	22, 238, 322
AsuII	TTCGAA	1 cut(s)	733
AvaII	GGWCC	3 cut(s)	31, 65, 400
AvrII	CCTAGG	1 cut(s)	592
BbsI	GAAGAC	2 cut(s)	333, 623
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	2 cut(s)	144, 626
BccI	CCATC	3 cut(s)	45, 221, 697
BclI	TGATCA	1 cut(s)	814
BfaI	CTAG	3 cut(s)	396, 593, 750
BfmI	CTRYAG	2 cut(s)	158, 640
BglII	AGATCT	1 cut(s)	830
BisI	GCNGC	2 cut(s)	158, 640
BlnI	CCTAGG	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	2 cut(s)	159, 641
Bme18I	GGWCC	3 cut(s)	31, 65, 400
BmgT120I	GGNCC	5 cut(s)	31, 65, 209, 400, 596
BmiI	GGNNCC	4 cut(s)	367, 401, 402, 598
BmsI	GCATC	4 cut(s)	475, 637, 854, 922
BpiI	GAAGAC	2 cut(s)	333, 623
Bpu1102I	GCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	829
BsaJI	CCNNGG	2 cut(s)	423, 592
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 217, 355
Bse118I	RCCGGY	1 cut(s)	608
Bse1I	ACTGG	2 cut(s)	242, 486
Bse8I	GATNNNNATC	1 cut(s)	829
BseDI	CCNNGG	2 cut(s)	423, 592
BseGI	GGATG	2 cut(s)	490, 780
BseJI	GATNNNNATC	1 cut(s)	829
BseLI	CCNNNNNNNGG	3 cut(s)	22, 217, 355
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	242, 486
BseRI	GAGGAG	2 cut(s)	38, 41
BseXI	GCAGC	2 cut(s)	144, 626
BshFI	GGCC	4 cut(s)	210, 304, 422, 597
BsiHKAI	GWGCWC	1 cut(s)	792
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	3 cut(s)	22, 217, 355
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	4 cut(s)	210, 304, 422, 597
Bsp119I	TTCGAA	1 cut(s)	733
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp143I	GATC	3 cut(s)	552, 814, 830
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	4 cut(s)	210, 304, 422, 597
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	3 cut(s)	855, 877, 926
BspLI	GGNNCC	4 cut(s)	367, 401, 402, 598
BspMAI	CTGCAG	2 cut(s)	162, 644
BspPI	GGATC	1 cut(s)	560
BspT104I	TTCGAA	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	608
BsrI	ACTGG	2 cut(s)	242, 486
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	2 cut(s)	423, 592
BssMI	GATC	3 cut(s)	552, 814, 830
BssT1I	CCWWGG	2 cut(s)	423, 592
Bst4CI	ACNGT	4 cut(s)	97, 376, 579, 670
BstBI	TTCGAA	1 cut(s)	733
BstDEI	CTNAG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	490, 780
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	3 cut(s)	555, 817, 833
BstMBI	GATC	3 cut(s)	552, 814, 830
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstSFI	CTRYAG	2 cut(s)	158, 640
BstV1I	GCAGC	2 cut(s)	144, 626
BstV2I	GAAGAC	2 cut(s)	333, 623
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BsuRI	GGCC	4 cut(s)	210, 304, 422, 597
BtsCI	GGATG	2 cut(s)	490, 780
BtsI	GCAGTG	3 cut(s)	154, 649, 908
BtsIMutI	CAGTG	5 cut(s)	102, 154, 649, 666, 908
CaiI	CAGNNNCTG	1 cut(s)	631
CciI	TCATGA	3 cut(s)	855, 877, 926
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	5 cut(s)	31, 65, 209, 400, 596
CseI	GACGC	2 cut(s)	85, 734
CspCI	CAANNNNNGTGG	2 cut(s)	882, 917
CviAII	CATG	8 cut(s)	121, 370, 559, 656, 838, 856, 878, 927
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	3 cut(s)	554, 816, 832
DpnII	GATC	3 cut(s)	552, 814, 830
Eco130I	CCWWGG	2 cut(s)	423, 592
Eco47I	GGWCC	3 cut(s)	31, 65, 400
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	2 cut(s)	400, 596
EcoT14I	CCWWGG	2 cut(s)	423, 592
ErhI	CCWWGG	2 cut(s)	423, 592
FaeI	CATG	8 cut(s)	124, 373, 562, 659, 841, 859, 881, 930
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	8 cut(s)	120, 369, 558, 655, 837, 855, 877, 926
FauI	CCCGC	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	2 cut(s)	158, 640
FokI	GGATG	2 cut(s)	497, 787
Fsp4HI	GCNGC	2 cut(s)	158, 640
FspBI	CTAG	3 cut(s)	396, 593, 750
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	2 cut(s)	158, 640
HaeIII	GGCC	4 cut(s)	210, 304, 422, 597
HapII	CCGG	1 cut(s)	609
HgaI	GACGC	2 cut(s)	85, 734
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	8 cut(s)	124, 373, 562, 659, 841, 859, 881, 930
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	2 cut(s)	352, 778
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	3 cut(s)	22, 238, 322
Hpy166II	GTNNAC	3 cut(s)	13, 575, 724
Hpy188I	TCNGA	4 cut(s)	633, 764, 774, 918
Hpy188III	TCNNGA	7 cut(s)	73, 85, 572, 709, 856, 878, 927
Hpy8I	GTNNAC	3 cut(s)	13, 575, 724
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	82, 222, 686, 759
HpyCH4III	ACNGT	4 cut(s)	97, 376, 579, 670
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	5 cut(s)	160, 292, 642, 729, 913
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	8 cut(s)	124, 373, 562, 659, 841, 859, 881, 930
HspAI	GCGC	1 cut(s)	345
KflI	GGGWCCC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	3 cut(s)	552, 814, 830
LmnI	GCTCC	2 cut(s)	427, 562
Lsp1109I	GCAGC	2 cut(s)	144, 626
LweI	GCATC	4 cut(s)	475, 637, 854, 922
MaeI	CTAG	3 cut(s)	396, 593, 750
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	554, 816, 832
MboI	GATC	3 cut(s)	552, 814, 830
MboII	GAAGA	8 cut(s)	205, 230, 233, 236, 290, 338, 628, 814
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	1 cut(s)	792
MluCI	AATT	6 cut(s)	202, 566, 621, 661, 678, 686
MmeI	TCCRAC	1 cut(s)	198
MseI	TTAA	4 cut(s)	102, 170, 267, 698
MspI	CCGG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	729
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeII	GATC	3 cut(s)	552, 814, 830
NlaIII	CATG	8 cut(s)	124, 373, 562, 659, 841, 859, 881, 930
NlaIV	GGNNCC	4 cut(s)	367, 401, 402, 598
NmuCI	GTSAC	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	733
PagI	TCATGA	3 cut(s)	855, 877, 926
PcsI	WCGNNNNNNNCGW	1 cut(s)	583
PctI	GAATGC	1 cut(s)	729
PfeI	GAWTC	2 cut(s)	352, 778
PkrI	GCNGC	2 cut(s)	159, 641
PpuMI	RGGWCCY	1 cut(s)	400
Psp1406I	AACGTT	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	400
PspN4I	GGNNCC	4 cut(s)	367, 401, 402, 598
PspPI	GGNCC	5 cut(s)	31, 65, 209, 400, 596
PspPPI	RGGWCCY	1 cut(s)	400
PstI	CTGCAG	2 cut(s)	162, 644
PstNI	CAGNNNCTG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	830
SaqAI	TTAA	4 cut(s)	102, 170, 267, 698
SatI	GCNGC	2 cut(s)	158, 640
Sau3AI	GATC	3 cut(s)	552, 814, 830
Sau96I	GGNCC	5 cut(s)	31, 65, 209, 400, 596
SduI	GDGCHC	1 cut(s)	792
SetI	ASST	9 cut(s)	18, 159, 251, 432, 532, 589, 810, 823, 866
SfaNI	GCATC	4 cut(s)	475, 637, 854, 922
SfcI	CTRYAG	2 cut(s)	158, 640
SfuI	TTCGAA	1 cut(s)	733
SinI	GGWCC	3 cut(s)	31, 65, 400
Sse9I	AATT	6 cut(s)	202, 566, 621, 661, 678, 686
SsiI	CCGC	1 cut(s)	459
SspMI	CTAG	3 cut(s)	396, 593, 750
StyI	CCWWGG	2 cut(s)	423, 592
TaaI	ACNGT	4 cut(s)	97, 376, 579, 670
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	4 cut(s)	54, 74, 555, 733
TasI	AATT	6 cut(s)	202, 566, 621, 661, 678, 686
TfiI	GAWTC	2 cut(s)	352, 778
Tru1I	TTAA	4 cut(s)	102, 170, 267, 698
Tru9I	TTAA	4 cut(s)	102, 170, 267, 698
TscAI	CASTG	5 cut(s)	102, 154, 649, 673, 915
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	157, 639
Tsp45I	GTSAC	1 cut(s)	244
TspRI	CASTG	5 cut(s)	102, 154, 649, 673, 915
VpaK11BI	GGWCC	3 cut(s)	31, 65, 400
XagI	CCTNNNNNAGG	1 cut(s)	20
XapI	RAATTY	3 cut(s)	202, 661, 686
XmaJI	CCTAGG	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	723
XspI	CTAG	3 cut(s)	396, 593, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.