Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002321

Physical Location & Seq

Genomic Coordinates Reverse (-)

47416013 .. 47419357

Gene Structure 3345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG347000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGGACTCTCAACGAAAATCTGTTCTCACTAGCTCATTATCAGTTTGCATCTCTTTGTTAGACCGTGAGAGGGAAGCTTTGAGAACAAATGCATGTACTGGTGAACACCAGCCTGCTCATGGATCTACAATTACTGTTAATAACGAGATTGTTGTGGCCATGCTCAACAGCCTAGGTGATTTGCTGAAACTTTTAGATGTTTCATCGGCGGACAATATGTTGTTAACTACATATGGCAAGTTACAGCCACCGCTTGGAAAACATCGTTTGAAGATTGTAGAGTTCATTTCAGTATTACTGTCAGTTCGTAGTCAAGCTGCTGAGAAGGAATTGATTCGTTTTGCAGCAATACAAAAAGTCTTAGACTTATTTTTTAAGTACCCATATAACAATTTTTTGCATCACCACATAGAGAACATAATCATATCATGTTTGGAAAGCAAAAATGGGCCTCTTGTACAACATATTCTTCGTGAATGTGATCTTGTTGGAAAAATACTTGAAGCAGAAAAGAATTTCACACTGGCCGCTGATTCATTTATGCCAACAATTCCTGCTAAGGGTCGATCCCCACCCAGGAACGGCAATATTGGACATTTGACATGTATATCCAACAAAATCATTCAACTGGGAAACAACAATAGGGAGATTCAGGCATATCTGCAGGAAAACAGTGTCTGGACTGAATGGCATACAGAAGTCCTATTAAAGCGTAATGCAGTGGAGAATGTCTCCCAGTGGGCGTGCGGGCGGCCTATATCATCTCTGGATCGTGGACGCTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAPS

Protein Analysis

263

Amino Acids

29.43

Weight (kDa)

8.21

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAPS	PF04499	5 - 111	4.8e-16	SIT4 phosphatase-associated protein
SAPS	PF04499	112 - 245	1.7e-27	SIT4 phosphatase-associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30470 AT1G30470 AT1G30470 AT2G28360 AT3G45190 AT3G45190
fragaria_vesca	FvH4_3g10000 FvH4_3g10000
malus_domestica	MD05G1274100.v1.1 MD10G1253800.v1.1
prunus_persica	Prupe.4G089700_v2.0.a1
pyrus_communis	pycom05g25550 pycom09g07810 pycom09g07840 pycom10g20940
rosa_chinensis	RchiOBHm_Chr5g0015881 RchiOBHm_Chr5g0049281 RchiOBHm_Chr5g0049291
rosa_laevigata	RLG00000034610
rosa_multiflora	Rmu_sc0000012.1_g000009 Rmu_sc0009674.1_g000007 Rmu_sc0012428.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032370 Rroxscaffold_1G00032380 Rroxscaffold_1G00060720
rosa_rugosa	Rorug05G0029700 Rorug05G0029800 Rorug05G0247400 Rorug05G0247500 Rorug05G0247600
rosa_samantha	Rh5AG123400 Rh5AG324000 Rh5BG122300 Rh5BG334900 Rh5BG335000 Rh5CG133500 Rh5CG360000 Rh5DG121700 Rh5DG347000 Rh5DG347100
rosa_wichuraiana	Rw5G010650 Rw5G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	5 cut(s)	212, 254, 531, 750, 754
AclWI	GGATC	3 cut(s)	133, 564, 780
AcoI	YGGCCR	2 cut(s)	159, 528
AcsI	RAATTY	1 cut(s)	517
AfaI	GTAC	3 cut(s)	100, 383, 462
AfiI	CCNNNNNNNGG	6 cut(s)	73, 122, 257, 563, 579, 584
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	3 cut(s)	274, 506, 629
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	4 cut(s)	36, 80, 320, 789
AluI	AGCT	4 cut(s)	36, 80, 320, 789
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	3 cut(s)	133, 564, 780
AlwNI	CAGNNNCTG	1 cut(s)	681
AoxI	GGCC	4 cut(s)	159, 452, 528, 755
ApeKI	GCWGC	2 cut(s)	320, 347
ApoI	RAATTY	1 cut(s)	517
Asp700I	GAANNNNTTC	1 cut(s)	336
AspA2I	CCTAGG	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	116, 191, 398
AvrII	CCTAGG	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	307, 359
BceAI	ACGGC	1 cut(s)	601
BciT130I	CCWGG	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	3 cut(s)	33, 176, 790
BfmI	CTRYAG	1 cut(s)	665
BisI	GCNGC	4 cut(s)	321, 348, 531, 755
BlnI	CCTAGG	1 cut(s)	175
BlsI	GCNGC	4 cut(s)	322, 349, 532, 756
Bme1390I	CCNGG	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	580
BmrI	ACTGGG	2 cut(s)	641, 733
BmsI	GCATC	2 cut(s)	60, 412
BmuI	ACTGGG	2 cut(s)	641, 733
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	769
BsaJI	CCNNGG	2 cut(s)	175, 578
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 122, 257, 563, 579, 584
Bse1I	ACTGG	4 cut(s)	106, 531, 636, 739
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	2 cut(s)	175, 578
BseLI	CCNNNNNNNGG	6 cut(s)	73, 122, 257, 563, 579, 584
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	4 cut(s)	106, 531, 636, 739
BseXI	GCAGC	2 cut(s)	307, 359
BshFI	GGCC	4 cut(s)	161, 454, 530, 757
BslI	CCNNNNNNNGG	6 cut(s)	73, 122, 257, 563, 579, 584
BsmAI	GTCTC	1 cut(s)	739
BsnI	GGCC	4 cut(s)	161, 454, 530, 757
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	4 cut(s)	125, 484, 569, 772
BspACI	CCGC	5 cut(s)	212, 254, 531, 750, 754
BspANI	GGCC	4 cut(s)	161, 454, 530, 757
BspCNI	CTCAG	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	669
BspPI	GGATC	3 cut(s)	133, 564, 780
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	4 cut(s)	106, 531, 636, 739
BssECI	CCNNGG	2 cut(s)	175, 578
BssMI	GATC	4 cut(s)	125, 484, 569, 772
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	4 cut(s)	68, 139, 303, 677
BstAUI	TGTACA	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	117, 748, 752
BstDEI	CTNAG	3 cut(s)	324, 364, 561
BstKTI	GATC	4 cut(s)	128, 487, 572, 775
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	4 cut(s)	125, 484, 569, 772
BstNI	CCWGG	1 cut(s)	580
BstNSI	RCATGY	2 cut(s)	99, 609
BstSCI	CCNGG	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	665
BstV1I	GCAGC	2 cut(s)	307, 359
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	4 cut(s)	161, 454, 530, 757
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	4 cut(s)	524, 682, 729, 746
Cac8I	GCNNGC	3 cut(s)	117, 748, 752
CaiI	CAGNNNCTG	1 cut(s)	681
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	99, 382, 461
CviAII	CATG	5 cut(s)	96, 122, 163, 432, 606
CviQI	GTAC	3 cut(s)	99, 382, 461
DdeI	CTNAG	3 cut(s)	324, 364, 561
DpnI	GATC	4 cut(s)	127, 486, 571, 774
DpnII	GATC	4 cut(s)	125, 484, 569, 772
EaeI	YGGCCR	2 cut(s)	159, 528
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	5 cut(s)	99, 125, 166, 435, 609
FatI	CATG	5 cut(s)	95, 121, 162, 431, 605
FauI	CCCGC	1 cut(s)	743
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	321, 348, 531, 755
Fsp4HI	GCNGC	4 cut(s)	321, 348, 531, 755
FspBI	CTAG	3 cut(s)	33, 176, 790
GluI	GCNGC	4 cut(s)	321, 348, 531, 755
HaeIII	GGCC	4 cut(s)	161, 454, 530, 757
Hin1II	CATG	5 cut(s)	99, 125, 166, 435, 609
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	4 cut(s)	8, 337, 536, 652
HpaI	GTTAAC	1 cut(s)	228
HphI	GGTGA	3 cut(s)	116, 191, 398
Hpy166II	GTNNAC	3 cut(s)	107, 228, 779
Hpy188III	TCNNGA	3 cut(s)	476, 682, 770
Hpy8I	GTNNAC	3 cut(s)	107, 228, 779
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	4 cut(s)	68, 139, 303, 677
HpyCH4V	TGCA	6 cut(s)	51, 95, 347, 403, 667, 722
HpyF3I	CTNAG	3 cut(s)	324, 364, 561
Hsp92II	CATG	5 cut(s)	99, 125, 166, 435, 609
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	125, 484, 569, 772
Lsp1109I	GCAGC	2 cut(s)	307, 359
LweI	GCATC	2 cut(s)	60, 412
MaeI	CTAG	3 cut(s)	33, 176, 790
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	4 cut(s)	127, 486, 571, 774
MboI	GATC	4 cut(s)	125, 484, 569, 772
MboII	GAAGA	2 cut(s)	286, 464
MflI	RGATCY	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	5 cut(s)	132, 332, 394, 517, 552
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	2 cut(s)	472, 639
MnlI	CCTC	2 cut(s)	66, 465
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	141, 227, 378, 710
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	580
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	4 cut(s)	125, 484, 569, 772
NlaIII	CATG	5 cut(s)	99, 125, 166, 435, 609
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	2 cut(s)	99, 609
PciI	ACATGT	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	337, 536, 652
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	322, 349, 532, 756
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PscI	ACATGT	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	669
PstNI	CAGNNNCTG	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	3 cut(s)	100, 383, 462
RsaNI	GTAC	3 cut(s)	99, 382, 461
SaqAI	TTAA	4 cut(s)	141, 227, 378, 710
SatI	GCNGC	4 cut(s)	321, 348, 531, 755
Sau3AI	GATC	4 cut(s)	125, 484, 569, 772
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	580
SetI	ASST	5 cut(s)	38, 82, 181, 322, 791
SfaNI	GCATC	2 cut(s)	60, 412
SfcI	CTRYAG	1 cut(s)	665
SmlI	CTYRAG	1 cut(s)	784
SmoI	CTYRAG	1 cut(s)	784
Sse9I	AATT	5 cut(s)	132, 332, 394, 517, 552
SsiI	CCGC	5 cut(s)	212, 254, 531, 750, 754
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	33, 176, 790
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	4 cut(s)	68, 139, 303, 677
TaqI	TCGA	1 cut(s)	568
TasI	AATT	5 cut(s)	132, 332, 394, 517, 552
TatI	WGTACW	2 cut(s)	98, 460
TauI	GCSGC	2 cut(s)	533, 757
TfiI	GAWTC	3 cut(s)	337, 536, 652
Tru1I	TTAA	4 cut(s)	141, 227, 378, 710
Tru9I	TTAA	4 cut(s)	141, 227, 378, 710
TscAI	CASTG	4 cut(s)	531, 682, 729, 746
TseI	GCWGC	2 cut(s)	320, 347
TspDTI	ATGAA	3 cut(s)	195, 277, 528
TspRI	CASTG	4 cut(s)	531, 682, 729, 746
Van91I	CCANNNNNTGG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	2 cut(s)	99, 609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XmaJI	CCTAGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	3 cut(s)	33, 176, 790
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.