Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002321

Physical Location & Seq

Genomic Coordinates Reverse (-)

27140373 .. 27142063

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0247600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCGAAGAACAGGAGCAAGAAGAAAAGAAAGGACGCGGATTCAATGGACGTCACAGAATTGCCCGTTTCAGATGTCCCTCAAGAAATGGATACTTCAGAGTCTGGGGCTCAAAACCCAAGTGGCGCTGCTTCCAATTTAAAGATAAAGGGGAGACAAATGAAGAGAACCAAGAATGCTCGGAAGAAGAAAGCTGTAGTAAGAGCTATATCGAAAAGGGAGAAGGCTGTTGAGAAAGTATTGAAGCATGAAAGCAAAACCTTGAGAACTCAATCCGCAAAACTGCTATACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAPS

Protein Analysis

98

Amino Acids

10.98

Weight (kDa)

10.32

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30470 AT1G30470 AT1G30470 AT2G28360 AT3G45190 AT3G45190
fragaria_vesca	FvH4_3g10000 FvH4_3g10000
malus_domestica	MD05G1274100.v1.1 MD10G1253800.v1.1
prunus_persica	Prupe.4G089700_v2.0.a1
pyrus_communis	pycom05g25550 pycom09g07810 pycom09g07840 pycom10g20940
rosa_chinensis	RchiOBHm_Chr5g0015881 RchiOBHm_Chr5g0049281 RchiOBHm_Chr5g0049291
rosa_laevigata	RLG00000034610
rosa_multiflora	Rmu_sc0000012.1_g000009 Rmu_sc0009674.1_g000007 Rmu_sc0012428.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032370 Rroxscaffold_1G00032380 Rroxscaffold_1G00060720
rosa_rugosa	Rorug05G0029700 Rorug05G0029800 Rorug05G0247400 Rorug05G0247500 Rorug05G0247600
rosa_samantha	Rh5AG123400 Rh5AG324000 Rh5BG122300 Rh5BG334900 Rh5BG335000 Rh5CG133500 Rh5CG360000 Rh5DG121700 Rh5DG347000 Rh5DG347100
rosa_wichuraiana	Rw5G010650 Rw5G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	38, 276
AcuI	CTGAAG	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	45, 244
AluBI	AGCT	2 cut(s)	194, 206
AluI	AGCT	2 cut(s)	194, 206
Alw26I	GTCTC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	115
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BpuEI	CTTGAG	2 cut(s)	66, 283
BsaHI	GRCGYC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	112
BspACI	CCGC	2 cut(s)	38, 276
BspFNI	CGCG	1 cut(s)	38
BssNI	GRCGYC	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	195
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	85
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	128
CseI	GACGC	1 cut(s)	44
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	4 cut(s)	110, 194, 206, 227
CviKI_1	RGCY	4 cut(s)	110, 194, 206, 227
DraI	TTTAAA	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	1 cut(s)	251
FaiI	YATR	3 cut(s)	209, 249, 289
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	129
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	129
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	129
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	41, 101
Hpy188I	TCNGA	3 cut(s)	73, 100, 183
Hpy188III	TCNNGA	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	1 cut(s)	90
Lsp1109I	GCAGC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	52
MboII	GAAGA	5 cut(s)	19, 34, 175, 196, 199
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	2 cut(s)	59, 136
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	181
MvnI	CGCG	1 cut(s)	38
NlaIII	CATG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	52
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	4 cut(s)	54, 196, 208, 263
SfcI	CTRYAG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	81, 262
SmoI	CTYRAG	2 cut(s)	81, 262
Sse9I	AATT	2 cut(s)	59, 136
SsiI	CCGC	2 cut(s)	38, 276
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	212
TasI	AATT	2 cut(s)	59, 136
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	176, 264
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.