Rorug05G0029800

Serine threonine-protein phosphatase 6 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002321
Physical Location & Seq
Reverse (-)
1898297 .. 1898890
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0029800.1

Sequence Viewer

Length: 594 bp
ATGATGATGATGCATCAGCAAGTTGGTAACAGACGCGGTGCAAACTCATATGCACCTCCTTTTCTTCCTATGCTACATTATCAACCTCAGGTTCTTCCTCTTTCTGGGTATAACTACCAGCCATATGTTGGTGGATACCATCCTTTTGTGCACCAAACTACGCCTCAACCGCCATACTATGCTACCACATTTTATAATCCTGTAGAACCAGATTACTTTGGCGCTTTCGGAACTTGTCCTTCTGTTGAACCTCAGTTTTCTTGTCATGCTCCGAGCATTATGCCAAATATGGGATCTCATTCTTTGAATTCAAGGGATGCAGTAGCCTCATTAAGGGGTGATATTATGAAGCAGATAGAGTACTATTTTAGTGATGAAAATTTGAATAAGCCTGACCGTTACCTGATTTCGTTGATGGATGACAAAGGGTGGGTTCCAGTACCTATCATTGCCGGGTTTCATAGGGTTAAAGCAATGTGTAAATCTGTAACCTTCATTCTTGAGTCGCTGTTAGACTCGAGTATAGTAGAAGTCCGAGGTAACAGGATAAGAAGACGTGATGTGTGGTCAAAGTACGTGGATTTCATCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAPS

Protein Analysis

197

Amino Acids

22.55

Weight (kDa)

7.75

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 115 - 170 5.7e-19 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 128
AccII CGCG 1 cut(s) 36
AciI CCGC 2 cut(s) 36, 170
AclWI GGATC 1 cut(s) 301
AcsI RAATTY 2 cut(s) 307, 379
AfaI GTAC 3 cut(s) 362, 441, 575
AfiI CCNNNNNNNGG 4 cut(s) 104, 128, 290, 333
AgsI TTSAA 4 cut(s) 248, 307, 312, 385
AjiI CACGTC 1 cut(s) 557
AluBI AGCT 1 cut(s) 591
AluI AGCT 1 cut(s) 591
Alw21I GWGCWC 1 cut(s) 153
Alw44I GTGCAC 1 cut(s) 149
AlwI GGATC 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 517
ApaLI GTGCAC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 307, 379
AspLEI GCGC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 517
AxyI CCTNAGG 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 559
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 2 cut(s) 147, 409
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciVI GTATCC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 454
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 225
BfuI GTATCC 1 cut(s) 128
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 517
BmgBI CACGTC 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 454
BmsI GCATC 2 cut(s) 22, 307
BpiI GAAGAC 1 cut(s) 559
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 577
BsaJI CCNNGG 1 cut(s) 535
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 128, 290, 333
Bse1I ACTGG 1 cut(s) 437
Bse21I CCTNAGG 1 cut(s) 87
Bse3DI GCAATG 2 cut(s) 447, 480
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 3 cut(s) 139, 322, 424
BseLI CCNNNNNNNGG 4 cut(s) 104, 128, 290, 333
BseMI GCAATG 2 cut(s) 447, 480
BseMII CTCAG 2 cut(s) 101, 266
BseNI ACTGG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 517
BsiSI CCGG 1 cut(s) 453
BslI CCNNNNNNNGG 4 cut(s) 104, 128, 290, 333
BsoBI CYCGRG 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 293
BspACI CCGC 2 cut(s) 36, 170
BspCNI CTCAG 2 cut(s) 100, 265
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 435
BspPI GGATC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 447, 480
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 577
BstDEI CTNAG 2 cut(s) 87, 252
BstENI CCTNNNNNAGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 139, 322, 424
BstFNI CGCG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 296
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 153
BstUI CGCG 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 559
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
Bsu36I CCTNAGG 1 cut(s) 87
BsuI GTATCC 1 cut(s) 128
BtrI CACGTC 1 cut(s) 557
BtsCI GGATG 3 cut(s) 139, 322, 424
CfoI GCGC 1 cut(s) 224
CseI GACGC 1 cut(s) 42
Csp6I GTAC 3 cut(s) 361, 440, 574
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 1 cut(s) 266
CviJI RGCY 4 cut(s) 121, 326, 391, 591
CviKI_1 RGCY 4 cut(s) 121, 326, 391, 591
CviQI GTAC 3 cut(s) 361, 440, 574
DdeI CTNAG 2 cut(s) 87, 252
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 517
EcoNI CCTNNNNNAGG 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 15
FaeI CATG 1 cut(s) 269
FatI CATG 1 cut(s) 265
FauNDI CATATG 2 cut(s) 49, 124
FokI GGATG 3 cut(s) 126, 329, 431
GlaI GCGC 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 225
HapII CCGG 1 cut(s) 453
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 224
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 2 cut(s) 503, 515
HpaII CCGG 1 cut(s) 453
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 230, 273, 536
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 249, 502
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 2 cut(s) 556, 576
HpyCH4V TGCA 5 cut(s) 13, 41, 53, 151, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 87, 252
HpySE526I ACGT 2 cut(s) 556, 576
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 274
LweI GCATC 2 cut(s) 22, 307
MaeII ACGT 2 cut(s) 556, 576
MaeIII GTNAC 4 cut(s) 26, 398, 487, 539
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 3 cut(s) 56, 86, 564
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 2 cut(s) 307, 379
MlyI GAGTC 2 cut(s) 509, 512
MnlI CCTC 7 cut(s) 66, 96, 108, 174, 261, 337, 530
Mph1103I ATGCAT 1 cut(s) 15
MseI TTAA 2 cut(s) 332, 468
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 454
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 169
NciI CCSGG 1 cut(s) 454
NdeI CATATG 2 cut(s) 49, 124
NdeII GATC 1 cut(s) 293
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 435
NsiI ATGCAT 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 128
PleI GAGTC 2 cut(s) 509, 511
PpsI GAGTC 2 cut(s) 509, 511
Ppu21I YACGTR 1 cut(s) 577
PsiI TTATAA 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 435
PspXI VCTCGAGB 1 cut(s) 517
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 3 cut(s) 362, 441, 575
RsaNI GTAC 3 cut(s) 361, 440, 574
SaqAI TTAA 2 cut(s) 332, 468
Sau3AI GATC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 2 cut(s) 509, 512
ScrFI CCNGG 1 cut(s) 454
SduI GDGCHC 1 cut(s) 153
SfaNI GCATC 2 cut(s) 22, 307
SfcI CTRYAG 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 517
SlaI CTCGAG 1 cut(s) 517
SmlI CTYRAG 2 cut(s) 500, 517
SmoI CTYRAG 2 cut(s) 500, 517
Sse9I AATT 2 cut(s) 307, 379
SsiI CCGC 2 cut(s) 36, 170
StyD4I CCNGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 2 cut(s) 559, 579
TaqI TCGA 1 cut(s) 518
TasI AATT 2 cut(s) 307, 379
TatI WGTACW 1 cut(s) 360
Tru1I TTAA 2 cut(s) 332, 468
Tru9I TTAA 2 cut(s) 332, 468
TspDTI ATGAA 5 cut(s) 362, 390, 449, 484, 574
Van91I CCANNNNNTGG 1 cut(s) 128
VneI GTGCAC 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 331
XapI RAATTY 2 cut(s) 307, 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 517
ZrmI AGTACT 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.