Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002321

Physical Location & Seq

Genomic Coordinates Reverse (-)

46655992 .. 46662439

Gene Structure 6448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG335000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGACGATGGTGAACCTTGTTGAGGAGGAGGACCACCATCAAAACAATAACATCGACAAGTTTGGTCCTTTCTCGACGCATTTCCAGAAGGACACAGTGCTTAAAAATCAAAATAATAACATGGCGATTGGGAACATTGAGAACAGCAGTGCTGAGCTGCAGGACAAGTTAAAGCCATTGGACGAGGATATGAAGATTGGGAATTTCGGCCCTTCGTTGGAAGAAGATGGCATTATTCTTCCAGTTGAGGGTTCCATGACAGTTTCAACAACAACAAAGACTAGGGACCCAGATATTATTGAAAAGGCCAAGGAGCTTACTGAACTTTTGTCATTATATGTTCCCGCAGATGAGGCAATAAGAATACTGGATGCCAAAATGAAATGTGATTTCATTGAGATTGGAACAAAGAGAGGTGGGCTATGCGTAAAATATGGGATCGACATGGAGCAATTTCGTGAACGGTGGGAACGTTTCCTAGGCCCCAAGAACACCGGCTTGAAGACAATTCAGCATCTGACAGGCTGCAGTGTTTTCTTTCATGGAAATTTCACTGTTGCTGTAATTGGTAAATTTGAAGGATTAAAGATGGTCAGGAGGATTGTGGTAGACTGCATTCGAAATAAAATGCGTCCTAGTGTCCATATCAGAAGGCTTCGGATGAATCAAAATGAGCACAAACTTACGAAGAAGCTATTTGATCAAGGTGGATATAGATCTGTCATGGAGGCATCAGTATTCATGAAAACCTCATTTGATTTTCATGAACATATATCTACAAAGTTTGTGGAAGCACTGCATCAGATACATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

31.05

Weight (kDa)

6.84

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	82 - 124	1.8e-09	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	148 - 223	6.2e-18	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30470 AT1G30470 AT1G30470 AT2G28360 AT3G45190 AT3G45190
fragaria_vesca	FvH4_3g10000 FvH4_3g10000
malus_domestica	MD05G1274100.v1.1 MD10G1253800.v1.1
prunus_persica	Prupe.4G089700_v2.0.a1
pyrus_communis	pycom05g25550 pycom09g07810 pycom09g07840 pycom10g20940
rosa_chinensis	RchiOBHm_Chr5g0015881 RchiOBHm_Chr5g0049281 RchiOBHm_Chr5g0049291
rosa_laevigata	RLG00000034610
rosa_multiflora	Rmu_sc0000012.1_g000009 Rmu_sc0009674.1_g000007 Rmu_sc0012428.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032370 Rroxscaffold_1G00032380 Rroxscaffold_1G00060720
rosa_rugosa	Rorug05G0029700 Rorug05G0029800 Rorug05G0247400 Rorug05G0247500 Rorug05G0247600
rosa_samantha	Rh5AG123400 Rh5AG324000 Rh5BG122300 Rh5BG334900 Rh5BG335000 Rh5CG133500 Rh5CG360000 Rh5DG121700 Rh5DG347000 Rh5DG347100
rosa_wichuraiana	Rw5G010650 Rw5G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	1 cut(s)	345
AclI	AACGTT	1 cut(s)	472
AclWI	GGATC	1 cut(s)	446
AcsI	RAATTY	3 cut(s)	202, 547, 572
AfiI	CCNNNNNNNGG	3 cut(s)	22, 217, 248
AgsI	TTSAA	4 cut(s)	267, 302, 502, 578
AluBI	AGCT	3 cut(s)	157, 316, 694
AluI	AGCT	3 cut(s)	157, 316, 694
Alw21I	GWGCWC	1 cut(s)	678
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	517
AoxI	GGCC	3 cut(s)	208, 306, 481
ApeKI	GCWGC	2 cut(s)	157, 525
ApoI	RAATTY	3 cut(s)	202, 547, 572
AspA2I	CCTAGG	1 cut(s)	478
AspS9I	GGNCC	5 cut(s)	31, 65, 209, 286, 482
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	619
AvaII	GGWCC	3 cut(s)	31, 65, 286
AvrII	CCTAGG	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	678
BbvI	GCAGC	2 cut(s)	144, 512
BccI	CCATC	3 cut(s)	45, 221, 583
BclI	TGATCA	1 cut(s)	700
BfaI	CTAG	3 cut(s)	282, 479, 636
BfmI	CTRYAG	2 cut(s)	158, 526
BglII	AGATCT	1 cut(s)	716
BisI	GCNGC	2 cut(s)	158, 526
BlnI	CCTAGG	1 cut(s)	478
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	2 cut(s)	159, 527
Bme18I	GGWCC	3 cut(s)	31, 65, 286
BmgT120I	GGNCC	5 cut(s)	31, 65, 209, 286, 482
BmiI	GGNNCC	4 cut(s)	253, 287, 288, 484
BmsI	GCATC	4 cut(s)	361, 523, 740, 808
BpiI	GAAGAC	1 cut(s)	509
Bpu1102I	GCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	619
BsaBI	GATNNNNATC	1 cut(s)	715
BsaJI	CCNNGG	2 cut(s)	309, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 217, 248
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	2 cut(s)	242, 372
Bse8I	GATNNNNATC	1 cut(s)	715
BseDI	CCNNGG	2 cut(s)	309, 478
BseGI	GGATG	2 cut(s)	376, 666
BseJI	GATNNNNATC	1 cut(s)	715
BseLI	CCNNNNNNNGG	3 cut(s)	22, 217, 248
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	242, 372
BseRI	GAGGAG	2 cut(s)	38, 41
BseXI	GCAGC	2 cut(s)	144, 512
BshFI	GGCC	3 cut(s)	210, 308, 483
BsiHKAI	GWGCWC	1 cut(s)	678
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	22, 217, 248
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	3 cut(s)	210, 308, 483
Bsp119I	TTCGAA	1 cut(s)	619
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	3 cut(s)	438, 700, 716
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	3 cut(s)	210, 308, 483
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	3 cut(s)	741, 763, 812
BspLI	GGNNCC	4 cut(s)	253, 287, 288, 484
BspMAI	CTGCAG	2 cut(s)	162, 530
BspPI	GGATC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	619
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	2 cut(s)	242, 372
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	309, 478
BssMI	GATC	3 cut(s)	438, 700, 716
BssT1I	CCWWGG	2 cut(s)	309, 478
Bst4CI	ACNGT	4 cut(s)	97, 262, 465, 556
BstBI	TTCGAA	1 cut(s)	619
BstDEI	CTNAG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	376, 666
BstKTI	GATC	3 cut(s)	441, 703, 719
BstMBI	GATC	3 cut(s)	438, 700, 716
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSFI	CTRYAG	2 cut(s)	158, 526
BstV1I	GCAGC	2 cut(s)	144, 512
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	210, 308, 483
BtsCI	GGATG	2 cut(s)	376, 666
BtsI	GCAGTG	3 cut(s)	154, 535, 794
BtsIMutI	CAGTG	5 cut(s)	102, 154, 535, 552, 794
CaiI	CAGNNNCTG	1 cut(s)	517
CciI	TCATGA	3 cut(s)	741, 763, 812
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	5 cut(s)	31, 65, 209, 286, 482
CseI	GACGC	2 cut(s)	85, 620
CspCI	CAANNNNNGTGG	2 cut(s)	768, 803
CviAII	CATG	8 cut(s)	121, 256, 445, 542, 724, 742, 764, 813
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	3 cut(s)	440, 702, 718
DpnII	GATC	3 cut(s)	438, 700, 716
Eco130I	CCWWGG	2 cut(s)	309, 478
Eco47I	GGWCC	3 cut(s)	31, 65, 286
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	2 cut(s)	286, 482
EcoT14I	CCWWGG	2 cut(s)	309, 478
ErhI	CCWWGG	2 cut(s)	309, 478
FaeI	CATG	8 cut(s)	124, 259, 448, 545, 727, 745, 767, 816
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	8 cut(s)	120, 255, 444, 541, 723, 741, 763, 812
FauI	CCCGC	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	2 cut(s)	158, 526
FokI	GGATG	2 cut(s)	383, 673
Fsp4HI	GCNGC	2 cut(s)	158, 526
FspBI	CTAG	3 cut(s)	282, 479, 636
GluI	GCNGC	2 cut(s)	158, 526
HaeIII	GGCC	3 cut(s)	210, 308, 483
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	2 cut(s)	85, 620
Hin1II	CATG	8 cut(s)	124, 259, 448, 545, 727, 745, 767, 816
HinfI	GANTC	1 cut(s)	664
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	13, 461, 610
Hpy188I	TCNGA	4 cut(s)	519, 650, 660, 804
Hpy188III	TCNNGA	7 cut(s)	73, 85, 458, 595, 742, 764, 813
Hpy8I	GTNNAC	3 cut(s)	13, 461, 610
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	82, 222, 572, 645
HpyCH4III	ACNGT	4 cut(s)	97, 262, 465, 556
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	4 cut(s)	160, 528, 615, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	8 cut(s)	124, 259, 448, 545, 727, 745, 767, 816
KflI	GGGWCCC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	3 cut(s)	438, 700, 716
LmnI	GCTCC	2 cut(s)	313, 448
LpnPI	CCDG	8 cut(s)	98, 146, 255, 303, 353, 507, 508, 580
Lsp1109I	GCAGC	2 cut(s)	144, 512
LweI	GCATC	4 cut(s)	361, 523, 740, 808
MaeI	CTAG	3 cut(s)	282, 479, 636
MaeII	ACGT	1 cut(s)	472
MalI	GATC	3 cut(s)	440, 702, 718
MboI	GATC	3 cut(s)	438, 700, 716
MboII	GAAGA	6 cut(s)	205, 230, 233, 236, 514, 700
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	6 cut(s)	202, 452, 507, 547, 564, 572
MmeI	TCCRAC	1 cut(s)	198
MseI	TTAA	3 cut(s)	102, 170, 584
MspI	CCGG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	3 cut(s)	438, 700, 716
NlaIII	CATG	8 cut(s)	124, 259, 448, 545, 727, 745, 767, 816
NlaIV	GGNNCC	4 cut(s)	253, 287, 288, 484
NspV	TTCGAA	1 cut(s)	619
PagI	TCATGA	3 cut(s)	741, 763, 812
PcsI	WCGNNNNNNNCGW	1 cut(s)	469
PctI	GAATGC	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	664
PkrI	GCNGC	2 cut(s)	159, 527
PpuMI	RGGWCCY	1 cut(s)	286
Psp1406I	AACGTT	1 cut(s)	472
Psp5II	RGGWCCY	1 cut(s)	286
PspN4I	GGNNCC	4 cut(s)	253, 287, 288, 484
PspPI	GGNCC	5 cut(s)	31, 65, 209, 286, 482
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	2 cut(s)	162, 530
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	716
SaqAI	TTAA	3 cut(s)	102, 170, 584
SatI	GCNGC	2 cut(s)	158, 526
Sau3AI	GATC	3 cut(s)	438, 700, 716
Sau96I	GGNCC	5 cut(s)	31, 65, 209, 286, 482
SduI	GDGCHC	1 cut(s)	678
SetI	ASST	8 cut(s)	18, 159, 318, 418, 475, 696, 709, 752
SfaNI	GCATC	4 cut(s)	361, 523, 740, 808
SfcI	CTRYAG	2 cut(s)	158, 526
SfuI	TTCGAA	1 cut(s)	619
SinI	GGWCC	3 cut(s)	31, 65, 286
Sse9I	AATT	6 cut(s)	202, 452, 507, 547, 564, 572
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	3 cut(s)	282, 479, 636
StyI	CCWWGG	2 cut(s)	309, 478
TaaI	ACNGT	4 cut(s)	97, 262, 465, 556
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	4 cut(s)	54, 74, 441, 619
TasI	AATT	6 cut(s)	202, 452, 507, 547, 564, 572
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	3 cut(s)	102, 170, 584
Tru9I	TTAA	3 cut(s)	102, 170, 584
TscAI	CASTG	5 cut(s)	102, 154, 535, 559, 801
TseI	GCWGC	2 cut(s)	157, 525
TspRI	CASTG	5 cut(s)	102, 154, 535, 559, 801
VpaK11BI	GGWCC	3 cut(s)	31, 65, 286
XagI	CCTNNNNNAGG	1 cut(s)	20
XapI	RAATTY	3 cut(s)	202, 547, 572
XmaJI	CCTAGG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	609
XspI	CTAG	3 cut(s)	282, 479, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.