Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012428.1

Orthogroup ID

OG0002321

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 8592

Gene Structure 8592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012428.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1267 bp

atgacgatggggaaccttgttgaggaggaggaccaccatcaaaacaataacatcgacaagtttggtcctttctcgacgcatttccagaaggacacagtgcttaaaaatcaaaataataacatggcgattgggaacattgagaacagcagtgctgagctgcaggacaagttaaagccattggacgaggatatgaagattgggaatttcggcccttcgttggaagaagatggcattattcttccagtcacctctttctctactttctttaagaaaaatgaagaaatatatctgcaaaatgcttggcctatggtgaaatctgctttagaagactatggtatttcgtgcgccctgaatctggttgagggttccatgacagtttcaacaacaacaaagactagggacccagatattattgaaaaggccaaggagcttactgaacttttgtcattatctgttcccgcagatgaggcaataagaatactggatgccaaaatgaaatgtgatttcattgagattggaacaaagagaggtgggctatgcgtaaaatatgggatcgacatggagcaatttcgtgaacggtgggaacgtttcctaggccccaagaacactggcttgaagacaattcagcatctgacaggctgcagtgttttctttcatggaaatttcactgttgctgtaattggtaaatttgaaggattaaagatggtcaggaggattgtggtagactgcattcgaaacaaaatgcgtcctagtgtccatatcagaaggcttcggatgaatcaaaatgagcacaaacttacgaagaagctatttgatcaaggtggatatagatctgtcatggaggcatcagtattcatgaaaacctcatttgattttcatgaacatatatctacaaagtttgtggaagcactgcatcagatacaagattcagatatagaggcaattgcagataagttcaggtctttggattctctagaggtgcatgttaatgcagcagaaaccctttgtgctataacaaggcttgctccacctggacttgctactaaaatctgtaatccgagttttatacaaagattgcttcagcatgctatggaggactctcaacgaaaatctgttctcactagctcattatcagtttgcatctctttgttagaccgtgagagggaagctttgagaacaaatgcatgtactggtgaacaccagcctgctcatggatctacaattactgttaataacgagattgttgtggccatgctcaacagcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

47.54

Weight (kDa)

6.18

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30470 AT1G30470 AT1G30470 AT2G28360 AT3G45190 AT3G45190
fragaria_vesca	FvH4_3g10000 FvH4_3g10000
malus_domestica	MD05G1274100.v1.1 MD10G1253800.v1.1
prunus_persica	Prupe.4G089700_v2.0.a1
pyrus_communis	pycom05g25550 pycom09g07810 pycom09g07840 pycom10g20940
rosa_chinensis	RchiOBHm_Chr5g0015881 RchiOBHm_Chr5g0049281 RchiOBHm_Chr5g0049291
rosa_laevigata	RLG00000034610
rosa_multiflora	Rmu_sc0000012.1_g000009 Rmu_sc0009674.1_g000007 Rmu_sc0012428.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032370 Rroxscaffold_1G00032380 Rroxscaffold_1G00060720
rosa_rugosa	Rorug05G0029700 Rorug05G0029800 Rorug05G0247400 Rorug05G0247500 Rorug05G0247600
rosa_samantha	Rh5AG123400 Rh5AG324000 Rh5BG122300 Rh5BG334900 Rh5BG335000 Rh5CG133500 Rh5CG360000 Rh5DG121700 Rh5DG347000 Rh5DG347100
rosa_wichuraiana	Rw5G010650 Rw5G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	1 cut(s)	459
AclI	AACGTT	1 cut(s)	586
AclWI	GGATC	2 cut(s)	560, 1222
AcoI	YGGCCR	1 cut(s)	1248
AcsI	RAATTY	3 cut(s)	202, 661, 686
AcuI	CTGAAG	1 cut(s)	1064
AfaI	GTAC	1 cut(s)	1189
AfiI	CCNNNNNNNGG	5 cut(s)	22, 217, 355, 1162, 1211
AgsI	TTSAA	4 cut(s)	381, 416, 616, 692
AjnI	CCWGG	1 cut(s)	1030
AluBI	AGCT	5 cut(s)	157, 430, 808, 1125, 1169
AluI	AGCT	5 cut(s)	157, 430, 808, 1125, 1169
Alw21I	GWGCWC	1 cut(s)	792
AlwI	GGATC	2 cut(s)	560, 1222
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	5 cut(s)	208, 302, 420, 595, 1248
ApeKI	GCWGC	3 cut(s)	157, 639, 992
ApoI	RAATTY	3 cut(s)	202, 661, 686
AspA2I	CCTAGG	1 cut(s)	592
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	5 cut(s)	31, 65, 209, 400, 596
AsuHPI	GGTGA	3 cut(s)	238, 322, 1205
AsuII	TTCGAA	1 cut(s)	733
AvaII	GGWCC	3 cut(s)	31, 65, 400
AvrII	CCTAGG	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	1250
BbsI	GAAGAC	2 cut(s)	333, 623
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	3 cut(s)	144, 626, 1004
BccI	CCATC	3 cut(s)	45, 221, 697
BciT130I	CCWGG	1 cut(s)	1032
BclI	TGATCA	1 cut(s)	814
BfaI	CTAG	6 cut(s)	396, 593, 750, 974, 1122, 1265
BfmI	CTRYAG	2 cut(s)	158, 640
BglII	AGATCT	1 cut(s)	830
BisI	GCNGC	3 cut(s)	158, 640, 993
BlnI	CCTAGG	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	3 cut(s)	159, 641, 994
Bme1390I	CCNGG	1 cut(s)	1032
Bme18I	GGWCC	3 cut(s)	31, 65, 400
BmgT120I	GGNCC	5 cut(s)	31, 65, 209, 400, 596
BmiI	GGNNCC	5 cut(s)	14, 367, 401, 402, 598
BmrFI	CCNGG	1 cut(s)	1032
BmsI	GCATC	5 cut(s)	475, 637, 854, 922, 1149
BpiI	GAAGAC	2 cut(s)	333, 623
Bpu1102I	GCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	829
BsaJI	CCNNGG	2 cut(s)	423, 592
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 217, 355, 1162, 1211
Bse1I	ACTGG	4 cut(s)	242, 486, 613, 1195
Bse8I	GATNNNNATC	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	1032
BseDI	CCNNGG	2 cut(s)	423, 592
BseGI	GGATG	2 cut(s)	490, 780
BseJI	GATNNNNATC	1 cut(s)	829
BseLI	CCNNNNNNNGG	5 cut(s)	22, 217, 355, 1162, 1211
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	4 cut(s)	242, 486, 613, 1195
BseRI	GAGGAG	2 cut(s)	38, 41
BseXI	GCAGC	3 cut(s)	144, 626, 1004
BshFI	GGCC	5 cut(s)	210, 304, 422, 597, 1250
BsiHKAI	GWGCWC	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	5 cut(s)	22, 217, 355, 1162, 1211
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	5 cut(s)	210, 304, 422, 597, 1250
Bsp119I	TTCGAA	1 cut(s)	733
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp143I	GATC	4 cut(s)	552, 814, 830, 1214
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	5 cut(s)	210, 304, 422, 597, 1250
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	2 cut(s)	855, 877
BspLI	GGNNCC	5 cut(s)	14, 367, 401, 402, 598
BspMAI	CTGCAG	2 cut(s)	162, 644
BspPI	GGATC	2 cut(s)	560, 1222
BspT104I	TTCGAA	1 cut(s)	733
BsrI	ACTGG	4 cut(s)	242, 486, 613, 1195
BssECI	CCNNGG	2 cut(s)	423, 592
BssMI	GATC	4 cut(s)	552, 814, 830, 1214
BssT1I	CCWWGG	2 cut(s)	423, 592
Bst2UI	CCWGG	1 cut(s)	1032
Bst4CI	ACNGT	6 cut(s)	97, 376, 579, 670, 1157, 1228
BstBI	TTCGAA	1 cut(s)	733
BstC8I	GCNNGC	3 cut(s)	1023, 1086, 1206
BstDEI	CTNAG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	490, 780
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	4 cut(s)	555, 817, 833, 1217
BstMBI	GATC	4 cut(s)	552, 814, 830, 1214
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNI	CCWGG	1 cut(s)	1032
BstNSI	RCATGY	3 cut(s)	986, 1088, 1188
BstSCI	CCNGG	1 cut(s)	1030
BstSFI	CTRYAG	2 cut(s)	158, 640
BstV1I	GCAGC	3 cut(s)	144, 626, 1004
BstV2I	GAAGAC	2 cut(s)	333, 623
BstX2I	RGATCY	2 cut(s)	830, 1214
BstYI	RGATCY	2 cut(s)	830, 1214
BsuRI	GGCC	5 cut(s)	210, 304, 422, 597, 1250
BtsCI	GGATG	2 cut(s)	490, 780
BtsI	GCAGTG	3 cut(s)	154, 649, 908
BtsIMutI	CAGTG	6 cut(s)	102, 154, 606, 649, 666, 908
Cac8I	GCNNGC	3 cut(s)	1023, 1086, 1206
CaiI	CAGNNNCTG	1 cut(s)	631
CciI	TCATGA	2 cut(s)	855, 877
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	5 cut(s)	31, 65, 209, 400, 596
CseI	GACGC	2 cut(s)	85, 734
Csp6I	GTAC	1 cut(s)	1188
CspCI	CAANNNNNGTGG	2 cut(s)	882, 917
CviQI	GTAC	1 cut(s)	1188
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	4 cut(s)	554, 816, 832, 1216
DpnII	GATC	4 cut(s)	552, 814, 830, 1214
EaeI	YGGCCR	1 cut(s)	1248
Eco130I	CCWWGG	2 cut(s)	423, 592
Eco47I	GGWCC	3 cut(s)	31, 65, 400
Eco57I	CTGAAG	1 cut(s)	1064
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	2 cut(s)	400, 596
EcoRII	CCWGG	1 cut(s)	1030
EcoT14I	CCWWGG	2 cut(s)	423, 592
EcoT22I	ATGCAT	1 cut(s)	1186
ErhI	CCWWGG	2 cut(s)	423, 592
FaqI	GGGAC	1 cut(s)	413
FauI	CCCGC	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	3 cut(s)	158, 640, 993
FokI	GGATG	2 cut(s)	497, 787
Fsp4HI	GCNGC	3 cut(s)	158, 640, 993
FspBI	CTAG	6 cut(s)	396, 593, 750, 974, 1122, 1265
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	3 cut(s)	158, 640, 993
HaeIII	GGCC	5 cut(s)	210, 304, 422, 597, 1250
HgaI	GACGC	2 cut(s)	85, 734
HhaI	GCGC	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	1167
HinfI	GANTC	5 cut(s)	352, 778, 926, 968, 1097
HphI	GGTGA	3 cut(s)	238, 322, 1205
Hpy166II	GTNNAC	3 cut(s)	575, 724, 1196
Hpy188I	TCNGA	6 cut(s)	633, 764, 774, 918, 931, 1059
Hpy188III	TCNNGA	7 cut(s)	73, 85, 572, 709, 856, 878, 974
Hpy8I	GTNNAC	3 cut(s)	575, 724, 1196
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	82, 222, 686, 759
HpyCH4III	ACNGT	6 cut(s)	97, 376, 579, 670, 1157, 1228
HpyCH4IV	ACGT	1 cut(s)	586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	586
HspAI	GCGC	1 cut(s)	345
KflI	GGGWCCC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	4 cut(s)	552, 814, 830, 1214
LmnI	GCTCC	3 cut(s)	427, 562, 1030
Lsp1109I	GCAGC	3 cut(s)	144, 626, 1004
LweI	GCATC	5 cut(s)	475, 637, 854, 922, 1149
MaeI	CTAG	6 cut(s)	396, 593, 750, 974, 1122, 1265
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	4 cut(s)	554, 816, 832, 1216
MboI	GATC	4 cut(s)	552, 814, 830, 1214
MboII	GAAGA	8 cut(s)	205, 230, 233, 236, 290, 338, 628, 814
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	2 cut(s)	830, 1214
MhlI	GDGCHC	1 cut(s)	792
MlsI	TGGCCA	1 cut(s)	1250
MluCI	AATT	8 cut(s)	202, 566, 621, 661, 678, 686, 942, 1221
MluNI	TGGCCA	1 cut(s)	1250
MlyI	GAGTC	1 cut(s)	1091
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	1250
Mph1103I	ATGCAT	1 cut(s)	1186
MscI	TGGCCA	1 cut(s)	1250
MseI	TTAA	6 cut(s)	102, 170, 267, 698, 987, 1230
MslI	CAYNNNNRTG	1 cut(s)	987
Msp20I	TGGCCA	1 cut(s)	1250
MspR9I	CCNGG	1 cut(s)	1032
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	1032
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeII	GATC	4 cut(s)	552, 814, 830, 1214
NlaIV	GGNNCC	5 cut(s)	14, 367, 401, 402, 598
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	1186
NspI	RCATGY	3 cut(s)	986, 1088, 1188
NspV	TTCGAA	1 cut(s)	733
PaeI	GCATGC	1 cut(s)	1088
PagI	TCATGA	2 cut(s)	855, 877
PcsI	WCGNNNNNNNCGW	1 cut(s)	583
PctI	GAATGC	1 cut(s)	729
PfeI	GAWTC	4 cut(s)	352, 778, 926, 968
PkrI	GCNGC	3 cut(s)	159, 641, 994
PleI	GAGTC	1 cut(s)	1091
PpsI	GAGTC	1 cut(s)	1091
PpuMI	RGGWCCY	1 cut(s)	400
Psp1406I	AACGTT	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	1030
PspGI	CCWGG	1 cut(s)	1030
PspN4I	GGNNCC	5 cut(s)	14, 367, 401, 402, 598
PspPI	GGNCC	5 cut(s)	31, 65, 209, 400, 596
PspPPI	RGGWCCY	1 cut(s)	400
PstI	CTGCAG	2 cut(s)	162, 644
PstNI	CAGNNNCTG	1 cut(s)	631
PsuI	RGATCY	2 cut(s)	830, 1214
RsaI	GTAC	1 cut(s)	1189
RsaNI	GTAC	1 cut(s)	1188
RseI	CAYNNNNRTG	1 cut(s)	987
SaqAI	TTAA	6 cut(s)	102, 170, 267, 698, 987, 1230
SatI	GCNGC	3 cut(s)	158, 640, 993
Sau3AI	GATC	4 cut(s)	552, 814, 830, 1214
Sau96I	GGNCC	5 cut(s)	31, 65, 209, 400, 596
SchI	GAGTC	1 cut(s)	1091
ScrFI	CCNGG	1 cut(s)	1032
SduI	GDGCHC	1 cut(s)	792
SfaNI	GCATC	5 cut(s)	475, 637, 854, 922, 1149
SfcI	CTRYAG	2 cut(s)	158, 640
SfuI	TTCGAA	1 cut(s)	733
SinI	GGWCC	3 cut(s)	31, 65, 400
SmiMI	CAYNNNNRTG	1 cut(s)	987
SphI	GCATGC	1 cut(s)	1088
Sse9I	AATT	8 cut(s)	202, 566, 621, 661, 678, 686, 942, 1221
SsiI	CCGC	1 cut(s)	459
SspMI	CTAG	6 cut(s)	396, 593, 750, 974, 1122, 1265
StyD4I	CCNGG	1 cut(s)	1030
StyI	CCWWGG	2 cut(s)	423, 592
TaaI	ACNGT	6 cut(s)	97, 376, 579, 670, 1157, 1228
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	4 cut(s)	54, 74, 555, 733
TasI	AATT	8 cut(s)	202, 566, 621, 661, 678, 686, 942, 1221
TatI	WGTACW	1 cut(s)	1187
TfiI	GAWTC	4 cut(s)	352, 778, 926, 968
Tru1I	TTAA	6 cut(s)	102, 170, 267, 698, 987, 1230
Tru9I	TTAA	6 cut(s)	102, 170, 267, 698, 987, 1230
TscAI	CASTG	6 cut(s)	102, 154, 613, 649, 673, 915
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	3 cut(s)	157, 639, 992
Tsp45I	GTSAC	1 cut(s)	244
TspRI	CASTG	6 cut(s)	102, 154, 613, 649, 673, 915
VpaK11BI	GGWCC	3 cut(s)	31, 65, 400
XagI	CCTNNNNNAGG	1 cut(s)	20
XapI	RAATTY	3 cut(s)	202, 661, 686
XbaI	TCTAGA	1 cut(s)	973
XceI	RCATGY	3 cut(s)	986, 1088, 1188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1208
XmaJI	CCTAGG	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	723
XspI	CTAG	6 cut(s)	396, 593, 750, 974, 1122, 1265
Zsp2I	ATGCAT	1 cut(s)	1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.