pycom09g07810

Serine threonine-protein phosphatase 6 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0002321
Physical Location & Seq
Forward (+)
5961418 .. 5963593
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1311 bp
ATGCTTCGAATTGGTTGTTGTCAACAGGAACTCGTGAAAACCCAATTGATTTGCTGTGAACATACACATAAAAAGTTTTACGAAGCACTGCATCAGGGACATTTTGGAAATGTGCTAGAGATGATACAAGATACAGATGTGCTGGAGAAAATAACAGAAAAGTTCATCTCTTGGGATTCTCCGGAAGTGCATGCTAATACAGCAGAGACACTTTGTGCTGTAGCAAGGTTCGCTCCACCTGGACTTGCTACTAAAATATCTAGCCCAAGTTTTATAGGAAGATTGTTCCGGCATGCTTTGGAGGACTCACGACCGCAATATGTTCTTATTAACTTATTGTCAGTGTGCTTGTATTTGTTAGACCCTACGAGGCTAAATTCGAGAACATATGAGAATTTTGGTAGACTTCAAATTACTCATGGATCTGTAGATACTGCTAATTCCGAGACTGTTGTTGGCATGCTGGAGATCCTAGGTGATTTGCTGAAGCTTTTGGATGTTTCAACGGTGGACAATGTGTTGCTAACTACATATGGCAAGTTACAGCCACCTCTTGGACAACATCGTTTAAAGATTGTAGAGTTCATTGCAGTATTACTGAGGGTGGGTGGTGAAACTGTTGAGAAGGAATTGATTCGTCTCGGAGCAATACAAAGAATTTTAGACTTGTTTTTCAAGTACCCATTTAACAACTTTGTCCATCACCACATAGAGAACATAATAGTATCATGTTTAGAAAGCAAGAATGCTCCTCTTGTACAACATCTTCTTTGTGAGTGTGATCTTGTCGGAAGAATACTTACAGCAGAAAATAATTACACATTAGAAACTGATCCAAACCGGCCGACAGTTCCTGATGAGGGTAGATCCCCACCCAGGTTAGGGAACATTGGACATTTAACACGTATATCCAACAAAATCATTCAACTGGGAAACAACAATAGCGAGATTCAGGCATATTTGCAGGTCCATACTTTTATTTCTTCATATATATGTTTCTTTTTCTGTGAGGTTCTAATATTTGTGTACTGCAATAAATATTTACATGAGAAGCATTCTTGTCAGGAAAATAGCGAGTGGACCGATTGGCATACGAATGTCCTATCAAGGCGTAATACTGTGGAGAATGTCTTTCTATGGGCTTGTGGGAACCCGGCAGTACAGGAGGAGATGTGTGATATGGAAGATGATTATAGAGCAGTTGAGCTGATACTTCCTACAAGCCCCTGTAGAAAAAAAAGGCGTTGCTCGCCGACAGATAATGATAGCGAAGATGTTAGAACATCTGAACTGGAAGACCAGAAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAPS

Protein Analysis

437

Amino Acids

49.8

Weight (kDa)

5.66

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAPS PF04499 37 - 322 2.6e-40 SIT4 phosphatase-associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 955
AccB7I CCANNNNNTGG 1 cut(s) 554
AccI GTMKAC 1 cut(s) 403
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 1 cut(s) 314
AclWI GGATC 4 cut(s) 430, 463, 827, 861
AcoI YGGCCR 1 cut(s) 842
AcsI RAATTY 3 cut(s) 376, 394, 657
AcuI CTGAAG 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 4 cut(s) 680, 759, 1028, 1161
AfiI CCNNNNNNNGG 5 cut(s) 554, 860, 876, 881, 882
AflIII ACRYGT 1 cut(s) 902
AgsI TTSAA 4 cut(s) 410, 504, 676, 926
AjnI CCWGG 2 cut(s) 238, 875
AluBI AGCT 2 cut(s) 490, 1207
AluI AGCT 2 cut(s) 490, 1207
Alw26I GTCTC 3 cut(s) 200, 440, 644
AlwI GGATC 4 cut(s) 430, 463, 827, 861
AlwNI CAGNNNCTG 1 cut(s) 854
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 1 cut(s) 842
ApoI RAATTY 3 cut(s) 376, 394, 657
Asp700I GAANNNNTTC 1 cut(s) 633
AspA2I CCTAGG 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 967, 1080
AsuC2I CCSGG 1 cut(s) 1154
AsuHPI GGTGA 3 cut(s) 488, 623, 695
AsuII TTCGAA 1 cut(s) 7
AvaII GGWCC 2 cut(s) 967, 1080
AvrII CCTAGG 1 cut(s) 472
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BarI GAAGNNNNNNTAC 4 cut(s) 750, 782, 784, 816
BauI CACGAG 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 1302
BccI CCATC 1 cut(s) 708
BciT130I CCWGG 2 cut(s) 240, 877
BcnI CCSGG 1 cut(s) 1154
BcoDI GTCTC 3 cut(s) 200, 440, 644
BfaI CTAG 3 cut(s) 116, 261, 473
BfmI CTRYAG 3 cut(s) 219, 426, 1228
BfuAI ACCTGC 1 cut(s) 955
BlnI CCTAGG 1 cut(s) 472
Bme1390I CCNGG 3 cut(s) 240, 877, 1154
Bme18I GGWCC 2 cut(s) 967, 1080
BmgT120I GGNCC 2 cut(s) 967, 1080
BmiI GGNNCC 1 cut(s) 1151
BmrFI CCNGG 3 cut(s) 240, 877, 1154
BmrI ACTGGG 1 cut(s) 938
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 938
BpiI GAAGAC 1 cut(s) 1302
BpmI CTGGAG 2 cut(s) 164, 485
Bpu14I TTCGAA 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 1154
BsaAI YACGTR 1 cut(s) 905
BsaJI CCNNGG 2 cut(s) 472, 875
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 1157, 1187
Bsc4I CCNNNNNNNGG 5 cut(s) 554, 860, 876, 881, 882
Bse118I RCCGGY 1 cut(s) 840
Bse1I ACTGG 2 cut(s) 933, 1296
Bse3DI GCAATG 1 cut(s) 585
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 2 cut(s) 240, 877
BseDI CCNNGG 2 cut(s) 472, 875
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 5 cut(s) 554, 860, 876, 881, 882
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 1 cut(s) 590
BseNI ACTGG 2 cut(s) 933, 1296
BseRI GAGGAG 2 cut(s) 741, 1181
BseX3I CGGCCG 1 cut(s) 842
Bsh1285I CGRYCG 2 cut(s) 314, 845
BshFI GGCC 1 cut(s) 844
BsiEI CGRYCG 2 cut(s) 314, 845
BsiSI CCGG 4 cut(s) 182, 289, 841, 1154
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 5 cut(s) 554, 860, 876, 881, 882
BsmAI GTCTC 3 cut(s) 200, 440, 644
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 2 cut(s) 751, 1054
BsnI GGCC 1 cut(s) 844
Bsp119I TTCGAA 1 cut(s) 7
Bsp13I TCCGGA 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 757
Bsp143I GATC 5 cut(s) 422, 468, 781, 832, 866
BspACI CCGC 1 cut(s) 314
BspANI GGCC 1 cut(s) 844
BspCNI CTCAG 1 cut(s) 591
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 1151
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 4 cut(s) 430, 463, 827, 861
BspT104I TTCGAA 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 585
BsrFI RCCGGY 1 cut(s) 840
BsrGI TGTACA 1 cut(s) 757
BsrI ACTGG 2 cut(s) 933, 1296
BssAI RCCGGY 1 cut(s) 840
BssECI CCNNGG 2 cut(s) 472, 875
BssMI GATC 5 cut(s) 422, 468, 781, 832, 866
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 2 cut(s) 240, 877
Bst4CI ACNGT 5 cut(s) 451, 508, 619, 850, 1120
BstAUI TGTACA 1 cut(s) 757
BstBAI YACGTR 1 cut(s) 905
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 4 cut(s) 192, 294, 461, 1250
BstDEI CTNAG 1 cut(s) 599
BstF5I GGATG 1 cut(s) 502
BstKTI GATC 5 cut(s) 425, 471, 784, 835, 869
BstMAI GTCTC 3 cut(s) 200, 440, 644
BstMBI GATC 5 cut(s) 422, 468, 781, 832, 866
BstMCI CGRYCG 2 cut(s) 314, 845
BstMWI GCNNNNNNNGC 3 cut(s) 200, 230, 1249
BstNI CCWGG 2 cut(s) 240, 877
BstNSI RCATGY 3 cut(s) 194, 296, 463
BstSCI CCNGG 3 cut(s) 238, 875, 1152
BstSFI CTRYAG 3 cut(s) 219, 426, 1228
BstV2I GAAGAC 1 cut(s) 1302
BstX2I RGATCY 3 cut(s) 422, 468, 866
BstYI RGATCY 3 cut(s) 422, 468, 866
BstZI CGGCCG 1 cut(s) 842
BsuRI GGCC 1 cut(s) 844
BtsCI GGATG 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 86, 348
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 4 cut(s) 192, 294, 461, 1250
CaiI CAGNNNCTG 1 cut(s) 854
Cfr10I RCCGGY 1 cut(s) 840
Cfr13I GGNCC 2 cut(s) 967, 1080
Csp6I GTAC 4 cut(s) 679, 758, 1027, 1160
CviAII CATG 6 cut(s) 191, 293, 419, 460, 729, 1046
CviJI RGCY 8 cut(s) 264, 373, 490, 547, 844, 1142, 1207, 1224
CviKI_1 RGCY 8 cut(s) 264, 373, 490, 547, 844, 1142, 1207, 1224
CviQI GTAC 4 cut(s) 679, 758, 1027, 1160
DdeI CTNAG 1 cut(s) 599
DpnI GATC 5 cut(s) 424, 470, 783, 834, 868
DpnII GATC 5 cut(s) 422, 468, 781, 832, 866
DraI TTTAAA 1 cut(s) 570
DraIII CACNNNGTG 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 842
EagI CGGCCG 1 cut(s) 842
EclXI CGGCCG 1 cut(s) 842
Eco130I CCWWGG 1 cut(s) 472
Eco47I GGWCC 2 cut(s) 967, 1080
Eco52I CGGCCG 1 cut(s) 842
Eco57I CTGAAG 1 cut(s) 506
EcoRII CCWGG 2 cut(s) 238, 875
EcoT14I CCWWGG 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 472
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 6 cut(s) 194, 296, 422, 463, 732, 1049
FaqI GGGAC 1 cut(s) 111
FatI CATG 6 cut(s) 190, 292, 418, 459, 728, 1045
FauNDI CATATG 2 cut(s) 388, 532
FblI GTMKAC 1 cut(s) 403
FokI GGATG 1 cut(s) 509
FspBI CTAG 3 cut(s) 116, 261, 473
GsuI CTGGAG 2 cut(s) 164, 485
HaeIII GGCC 1 cut(s) 844
HapII CCGG 4 cut(s) 182, 289, 841, 1154
Hin1II CATG 6 cut(s) 194, 296, 422, 463, 732, 1049
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 4 cut(s) 176, 305, 634, 949
HpaII CCGG 4 cut(s) 182, 289, 841, 1154
HphI GGTGA 3 cut(s) 488, 623, 695
Hpy166II GTNNAC 6 cut(s) 23, 59, 404, 511, 1027, 1080
Hpy188I TCNGA 4 cut(s) 445, 644, 791, 1288
Hpy188III TCNNGA 6 cut(s) 34, 182, 309, 381, 854, 1064
Hpy8I GTNNAC 6 cut(s) 23, 59, 404, 511, 1027, 1080
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 5 cut(s) 451, 508, 619, 850, 1120
HpyCH4IV ACGT 1 cut(s) 904
HpyCH4V TGCA 5 cut(s) 91, 190, 590, 964, 1032
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 230, 1249
HpyF3I CTNAG 1 cut(s) 599
HpySE526I ACGT 1 cut(s) 904
Hsp92II CATG 6 cut(s) 194, 296, 422, 463, 732, 1049
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 5 cut(s) 422, 468, 781, 832, 866
LmnI GCTCC 3 cut(s) 238, 644, 754
LweI GCATC 1 cut(s) 100
MaeI CTAG 3 cut(s) 116, 261, 473
MaeII ACGT 1 cut(s) 904
MaeIII GTNAC 1 cut(s) 540
MalI GATC 5 cut(s) 424, 470, 783, 834, 868
MboI GATC 5 cut(s) 422, 468, 781, 832, 866
MboII GAAGA 7 cut(s) 291, 758, 804, 975, 1196, 1283, 1307
MfeI CAATTG 1 cut(s) 44
MflI RGATCY 3 cut(s) 422, 468, 866
MluCI AATT 9 cut(s) 9, 44, 376, 394, 411, 439, 629, 657, 814
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 769, 936
MnlI CCTC 8 cut(s) 295, 363, 561, 594, 762, 853, 1003, 1159
MroI TCCGGA 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 4 cut(s) 330, 569, 687, 899
MslI CAYNNNNRTG 2 cut(s) 991, 1095
MspI CCGG 4 cut(s) 182, 289, 841, 1154
MspR9I CCNGG 3 cut(s) 240, 877, 1154
MunI CAATTG 1 cut(s) 44
Mva1269I GAATGC 2 cut(s) 751, 1054
MvaI CCWGG 2 cut(s) 240, 877
MwoI GCNNNNNNNGC 3 cut(s) 200, 230, 1249
NciI CCSGG 1 cut(s) 1154
NdeI CATATG 2 cut(s) 388, 532
NdeII GATC 5 cut(s) 422, 468, 781, 832, 866
NlaIII CATG 6 cut(s) 194, 296, 422, 463, 732, 1049
NlaIV GGNNCC 1 cut(s) 1151
NspI RCATGY 3 cut(s) 194, 296, 463
NspV TTCGAA 1 cut(s) 7
PaeI GCATGC 3 cut(s) 194, 296, 463
PctI GAATGC 2 cut(s) 751, 1054
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 3 cut(s) 176, 634, 949
PflMI CCANNNNNTGG 1 cut(s) 554
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 905
Psp6I CCWGG 2 cut(s) 238, 875
PspGI CCWGG 2 cut(s) 238, 875
PspN4I GGNNCC 1 cut(s) 1151
PspPI GGNCC 2 cut(s) 967, 1080
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 3 cut(s) 422, 468, 866
RsaI GTAC 4 cut(s) 680, 759, 1028, 1161
RsaNI GTAC 4 cut(s) 679, 758, 1027, 1160
RseI CAYNNNNRTG 2 cut(s) 991, 1095
SaqAI TTAA 4 cut(s) 330, 569, 687, 899
Sau3AI GATC 5 cut(s) 422, 468, 781, 832, 866
Sau96I GGNCC 2 cut(s) 967, 1080
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 240, 877, 1154
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 3 cut(s) 219, 426, 1228
SfuI TTCGAA 1 cut(s) 7
SinI GGWCC 2 cut(s) 967, 1080
SmiMI CAYNNNNRTG 2 cut(s) 991, 1095
SphI GCATGC 3 cut(s) 194, 296, 463
Sse9I AATT 9 cut(s) 9, 44, 376, 394, 411, 439, 629, 657, 814
SsiI CCGC 1 cut(s) 314
SspI AATATT 2 cut(s) 1020, 1040
SspMI CTAG 3 cut(s) 116, 261, 473
StyD4I CCNGG 3 cut(s) 238, 875, 1152
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 5 cut(s) 451, 508, 619, 850, 1120
TaiI ACGT 1 cut(s) 907
TaqI TCGA 2 cut(s) 7, 380
TaqII GACCGA 1 cut(s) 1097
TasI AATT 9 cut(s) 9, 44, 376, 394, 411, 439, 629, 657, 814
TatI WGTACW 3 cut(s) 757, 1026, 1159
TfiI GAWTC 3 cut(s) 176, 634, 949
Tru1I TTAA 4 cut(s) 330, 569, 687, 899
Tru9I TTAA 4 cut(s) 330, 569, 687, 899
TscAI CASTG 2 cut(s) 93, 348
TspDTI ATGAA 3 cut(s) 154, 574, 975
TspRI CASTG 2 cut(s) 93, 348
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 2 cut(s) 967, 1080
XapI RAATTY 3 cut(s) 376, 394, 657
XceI RCATGY 3 cut(s) 194, 296, 463
XmaJI CCTAGG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 3 cut(s) 116, 261, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.