pycom10g11070

Hippocampus abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0001419
Physical Location & Seq
Forward (+)
14610801 .. 14617202
6402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1335 bp
ATGGAGATGGAGGGCATTGGAGGACTGAGGCATCTGTTTATGACAGTGTTTTTACATGGGTTTGCAAGCTTCATGGTGATTCCAGCCATAACTGATATCACCATGCTGGCTCTTTGCCCTGGTCAAGATGAGTGCTCCCTTGCCATTTACCTCTCTGGTTTTCAACAAGCGATGATAGGTTTGGGAACGGTGGTGATGACTCCACTAATTGGGAATTTGTCGGATGTGTATGGGAGGAAGTCTCTTCTCACGATCCCAATGACCCTCTCCATTGTCCCATTAGCGATATTGGCGTATAGCAGGAAGACAAGCTTCTTTTATGCCTACTATGTGCTGAGGACAGTAACTGCCTTGGTAGGTGAAGGCAGCATCAACTGCCTCACCCTTGCTTATGTGGCCGACAATGTTTCAGAGAGAGAACGAATATCTGCATTTGGAATTCTTGCTGGATTTACCTCTGCAGCATTTGTATGTGGAACCTTAGCAGCTCGTTTCCTCTCCACTGCTTCAACATTTCAGGTTGCTGCCTTTGCATCAATGCTTTCAACTATCTACATGAGAATTTTTCTCAAGGAGAGCTTGCCGGGCGATGACAGTACTTTGAGGCAGCCCATCTTGAAAGGAGGAGTACCAGAAGTTGTTGATGAAGGCGATGTCTACTCGCCGAAAACGAAACAAGTATTTAAGAAAATTCCATCTCCAGGAGATTTGATTTCCCTACTGAGGAGTAGTAAGATTCTGTCACAAGCAGCAGTTGTTTCCTTCTTTCAGAGCCTGGCAGAGGGTGGCATGCAAGCTTCATTAATGTATTTCTTAAAGGCTCGTTTCCACTTCAACAAGAATCAGTTTGCTGATCTAATGCTGATTGTTGGGATATCGGGGACCATATCACAGCTGCTTTTCATGCCAATGTTGGCAACTGCGATTGGAGAGGAAAAGTTGCTTGCAATTGGGCTCATAATGGGCAGTATGAATATGTTTCTTAACAGCATTTCATTGGCAGTTTGGGTTCCTTATGCTGCGACTCTGTTTTCTGTTTTTGGATTTTTAGTGCAGCCAAGTATACGCAGCATCGCATCAAAACAAGTTGGACTCAATGATCAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAGCTCCTTTGCCAACATTGTTTCTCCATTAATTTTCAGTCCTCTAACAGCTTTATTCCTGTCTGAAGAAGCACCATTTTATTTCCCTGGCTTCAGTATTCTGTGCATTGGCCTTGCAACGATGATTGCCTTCGTTCAGAGCCTAATGATAAGGGCTTCTCCTCACAAAACCAGCAACACCATCTGCGTGGAATCTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

445

Amino Acids

47.85

Weight (kDa)

8.1

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 12 - 387 2.6e-27 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AccI GTMKAC 2 cut(s) 657, 1063
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 4 cut(s) 214, 438, 561, 690
AcuI CTGAAG 2 cut(s) 1210, 1218
AfaI GTAC 2 cut(s) 598, 630
AfiI CCNNNNNNNGG 4 cut(s) 209, 701, 723, 781
AgsI TTSAA 5 cut(s) 164, 510, 546, 619, 835
AjnI CCWGG 4 cut(s) 118, 700, 774, 1219
AluBI AGCT 8 cut(s) 69, 312, 488, 579, 797, 895, 1137, 1184
AluI AGCT 8 cut(s) 69, 312, 488, 579, 797, 895, 1137, 1184
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 1 cut(s) 247
AlwNI CAGNNNCTG 2 cut(s) 347, 775
AoxI GGCC 2 cut(s) 396, 1243
ApoI RAATTY 4 cut(s) 214, 438, 561, 690
AseI ATTAAT 2 cut(s) 803, 1163
AspS9I GGNCC 1 cut(s) 882
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 5 cut(s) 88, 91, 205, 371, 373
AvaII GGWCC 1 cut(s) 882
BanII GRGCYC 1 cut(s) 957
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 335
BccI CCATC 3 cut(s) 620, 703, 1322
BciT130I CCWGG 4 cut(s) 120, 702, 776, 1221
BclI TGATCA 1 cut(s) 1099
BcnI CCSGG 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 1333
BfmI CTRYAG 1 cut(s) 459
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 5 cut(s) 120, 585, 702, 776, 1221
Bme18I GGWCC 1 cut(s) 882
BmgT120I GGNCC 1 cut(s) 882
BmiI GGNNCC 3 cut(s) 478, 883, 1011
BmrFI CCNGG 5 cut(s) 120, 585, 702, 776, 1221
BmsI GCATC 6 cut(s) 40, 378, 542, 1080, 1085, 1109
BpiI GAAGAC 1 cut(s) 311
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpmI CTGGAG 1 cut(s) 684
Bpu10I CCTNAGC 2 cut(s) 335, 481
BpuEI CTTGAG 2 cut(s) 554, 1098
BpuMI CCSGG 1 cut(s) 585
BsaJI CCNNGG 3 cut(s) 118, 351, 1219
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 701, 723, 781
BseBI CCWGG 4 cut(s) 120, 702, 776, 1221
BseDI CCNNGG 3 cut(s) 118, 351, 1219
BseGI GGATG 2 cut(s) 229, 1124
BseLI CCNNNNNNNGG 4 cut(s) 209, 701, 723, 781
BseMII CTCAG 3 cut(s) 17, 326, 713
BseRI GAGGAG 3 cut(s) 639, 739, 1284
BsgI GTGCAG 1 cut(s) 1073
BshFI GGCC 2 cut(s) 398, 1245
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 2 cut(s) 260, 895
BslI CCNNNNNNNGG 4 cut(s) 209, 701, 723, 781
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 2 cut(s) 260, 895
BsnI GGCC 2 cut(s) 398, 1245
Bsp1286I GDGCHC 2 cut(s) 137, 957
Bsp143I GATC 3 cut(s) 252, 853, 1099
BspANI GGCC 2 cut(s) 398, 1245
BspCNI CTCAG 3 cut(s) 18, 327, 714
BspLI GGNNCC 3 cut(s) 478, 883, 1011
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 1 cut(s) 247
BssECI CCNNGG 3 cut(s) 118, 351, 1219
BssMI GATC 3 cut(s) 252, 853, 1099
BssNAI GTATAC 1 cut(s) 1064
BssT1I CCWWGG 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 1064
Bst2UI CCWGG 4 cut(s) 120, 702, 776, 1221
Bst4CI ACNGT 4 cut(s) 46, 190, 343, 596
Bst6I CTCTTC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 375
BstC8I GCNNGC 6 cut(s) 67, 108, 581, 791, 795, 945
BstDEI CTNAG 4 cut(s) 26, 335, 481, 722
BstENI CCTNNNNNAGG 1 cut(s) 779
BstF5I GGATG 2 cut(s) 229, 1124
BstKTI GATC 3 cut(s) 255, 856, 1102
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 3 cut(s) 252, 853, 1099
BstMWI GCNNNNNNNGC 7 cut(s) 290, 375, 395, 530, 585, 904, 1128
BstNI CCWGG 4 cut(s) 120, 702, 776, 1221
BstNSI RCATGY 1 cut(s) 793
BstSCI CCNGG 5 cut(s) 118, 583, 700, 774, 1219
BstSFI CTRYAG 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 1321
BstZ17I GTATAC 1 cut(s) 1064
BsuRI GGCC 2 cut(s) 398, 1245
BtgZI GCGATG 4 cut(s) 185, 603, 666, 1057
BtsCI GGATG 2 cut(s) 229, 1124
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 51, 501
Cac8I GCNNGC 6 cut(s) 67, 108, 581, 791, 795, 945
CaiI CAGNNNCTG 2 cut(s) 347, 775
Cfr13I GGNCC 1 cut(s) 882
Csp6I GTAC 2 cut(s) 597, 629
CviAII CATG 6 cut(s) 56, 73, 103, 556, 790, 904
CviQI GTAC 2 cut(s) 597, 629
DdeI CTNAG 4 cut(s) 26, 335, 481, 722
DpnI GATC 3 cut(s) 254, 855, 1101
DpnII GATC 3 cut(s) 252, 853, 1099
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 957
Eco32I GATATC 2 cut(s) 97, 876
Eco47I GGWCC 1 cut(s) 882
Eco57I CTGAAG 2 cut(s) 1210, 1218
EcoNI CCTNNNNNAGG 1 cut(s) 779
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 4 cut(s) 118, 700, 774, 1219
EcoRV GATATC 2 cut(s) 97, 876
EcoT14I CCWWGG 1 cut(s) 351
EcoT22I ATGCAT 1 cut(s) 1124
EcoT38I GRGCYC 1 cut(s) 957
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 6 cut(s) 59, 76, 106, 559, 793, 907
FalI AAGNNNNNCTT 4 cut(s) 296, 328, 563, 595
FaqI GGGAC 2 cut(s) 260, 895
FatI CATG 6 cut(s) 55, 72, 102, 555, 789, 903
FbaI TGATCA 1 cut(s) 1099
FblI GTMKAC 2 cut(s) 657, 1063
FokI GGATG 2 cut(s) 236, 1131
FriOI GRGCYC 1 cut(s) 957
FspBI CTAG 1 cut(s) 1333
GsuI CTGGAG 1 cut(s) 684
HaeIII GGCC 2 cut(s) 398, 1245
HapII CCGG 1 cut(s) 584
Hin1II CATG 6 cut(s) 59, 76, 106, 559, 793, 907
HindIII AAGCTT 3 cut(s) 67, 310, 795
HinfI GANTC 7 cut(s) 79, 199, 736, 841, 1024, 1092, 1325
HpaII CCGG 1 cut(s) 584
HphI GGTGA 5 cut(s) 88, 91, 205, 371, 373
Hpy166II GTNNAC 2 cut(s) 658, 1064
Hpy188I TCNGA 5 cut(s) 223, 412, 771, 1198, 1272
Hpy188III TCNNGA 3 cut(s) 125, 250, 616
Hpy8I GTNNAC 2 cut(s) 658, 1064
HpyAV CCTTC 4 cut(s) 356, 641, 772, 1273
HpyCH4III ACNGT 4 cut(s) 46, 190, 343, 596
HpyF10VI GCNNNNNNNGC 7 cut(s) 290, 375, 395, 530, 585, 904, 1128
HpyF3I CTNAG 4 cut(s) 26, 335, 481, 722
Hsp92II CATG 6 cut(s) 59, 76, 106, 559, 793, 907
Ksp22I TGATCA 1 cut(s) 1099
Kzo9I GATC 3 cut(s) 252, 853, 1099
LmnI GCTCC 2 cut(s) 140, 1142
LweI GCATC 6 cut(s) 40, 378, 542, 1080, 1085, 1109
MaeI CTAG 1 cut(s) 1333
MaeIII GTNAC 2 cut(s) 343, 741
MalI GATC 3 cut(s) 254, 855, 1101
MboI GATC 3 cut(s) 252, 853, 1099
MboII GAAGA 3 cut(s) 236, 316, 1211
MfeI CAATTG 1 cut(s) 948
MhlI GDGCHC 2 cut(s) 137, 957
MluCI AATT 7 cut(s) 207, 214, 438, 561, 690, 948, 1164
MlyI GAGTC 3 cut(s) 193, 1018, 1086
MmeI TCCRAC 2 cut(s) 201, 1069
Mph1103I ATGCAT 1 cut(s) 1124
MseI TTAA 5 cut(s) 684, 803, 815, 984, 1163
MslI CAYNNNNRTG 3 cut(s) 469, 908, 1319
MspA1I CMGCKG 1 cut(s) 895
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 5 cut(s) 120, 585, 702, 776, 1221
MunI CAATTG 1 cut(s) 948
MvaI CCWGG 4 cut(s) 120, 702, 776, 1221
MwoI GCNNNNNNNGC 7 cut(s) 290, 375, 395, 530, 585, 904, 1128
NciI CCSGG 1 cut(s) 585
NdeII GATC 3 cut(s) 252, 853, 1099
NlaIII CATG 6 cut(s) 59, 76, 106, 559, 793, 907
NlaIV GGNNCC 3 cut(s) 478, 883, 1011
NmuCI GTSAC 1 cut(s) 741
NsiI ATGCAT 1 cut(s) 1124
NspI RCATGY 1 cut(s) 793
PaeI GCATGC 1 cut(s) 793
PcsI WCGNNNNNNNCGW 1 cut(s) 668
PfeI GAWTC 4 cut(s) 79, 736, 841, 1325
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 700
PleI GAGTC 3 cut(s) 193, 1018, 1086
PpsI GAGTC 3 cut(s) 193, 1018, 1086
PshBI ATTAAT 2 cut(s) 803, 1163
Psp6I CCWGG 4 cut(s) 118, 700, 774, 1219
PspGI CCWGG 4 cut(s) 118, 700, 774, 1219
PspN4I GGNNCC 3 cut(s) 478, 883, 1011
PspPI GGNCC 1 cut(s) 882
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 2 cut(s) 347, 775
PvuII CAGCTG 1 cut(s) 895
RsaI GTAC 2 cut(s) 598, 630
RsaNI GTAC 2 cut(s) 597, 629
RseI CAYNNNNRTG 3 cut(s) 469, 908, 1319
SaqAI TTAA 5 cut(s) 684, 803, 815, 984, 1163
Sau3AI GATC 3 cut(s) 252, 853, 1099
Sau96I GGNCC 1 cut(s) 882
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 3 cut(s) 193, 1018, 1086
ScrFI CCNGG 5 cut(s) 120, 585, 702, 776, 1221
SduI GDGCHC 2 cut(s) 137, 957
SfaNI GCATC 6 cut(s) 40, 378, 542, 1080, 1085, 1109
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 882
SmiMI CAYNNNNRTG 3 cut(s) 469, 908, 1319
SmlI CTYRAG 2 cut(s) 569, 1113
SmoI CTYRAG 2 cut(s) 569, 1113
SphI GCATGC 1 cut(s) 793
Sse9I AATT 7 cut(s) 207, 214, 438, 561, 690, 948, 1164
SspMI CTAG 1 cut(s) 1333
StyD4I CCNGG 5 cut(s) 118, 583, 700, 774, 1219
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 4 cut(s) 46, 190, 343, 596
TasI AATT 7 cut(s) 207, 214, 438, 561, 690, 948, 1164
TatI WGTACW 1 cut(s) 596
TfiI GAWTC 4 cut(s) 79, 736, 841, 1325
Tru1I TTAA 5 cut(s) 684, 803, 815, 984, 1163
Tru9I TTAA 5 cut(s) 684, 803, 815, 984, 1163
TscAI CASTG 2 cut(s) 51, 508
TseFI GTSAC 1 cut(s) 741
Tsp45I GTSAC 1 cut(s) 741
TspDTI ATGAA 6 cut(s) 61, 660, 789, 892, 984, 986
TspRI CASTG 2 cut(s) 51, 508
Van91I CCANNNNNTGG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 882
VspI ATTAAT 2 cut(s) 803, 1163
XagI CCTNNNNNAGG 1 cut(s) 779
XapI RAATTY 4 cut(s) 214, 438, 561, 690
XceI RCATGY 1 cut(s) 793
XmiI GTMKAC 2 cut(s) 657, 1063
XspI CTAG 1 cut(s) 1333
ZrmI AGTACT 1 cut(s) 598
Zsp2I ATGCAT 1 cut(s) 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.