pycom10g25450

Transmembrane protein 184C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004499
Physical Location & Seq
Forward (+)
27091293 .. 27092872
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
ATGGATTTTAGAACAATGGATCGCGGTCAGTTGACCCTGCTAGGATCCGCAGGCTGTGTGATGCTTACGGTGCATTTCACATTACAGTTATTGTCGCAACATCTCTTTTACTGGAAGAACCCGAAGGAGCAGAAGGCGATAATAATTATCATTCTTATGGCTCCTTTATACGCTGCTGACTCGTTTGTGGGTTTATTGGATATTAAGGGAAGCAAAACGTTTTTCATGTTTTTGGACTCTATTAAGGAATGTTACGAGGCTCTGGTGATTGCTAAGTTCTTGGCTCTTATGTATAGTTACCTGAAGATATCCATAAGCAAAAATATTGTGCCAGATGAAATCAAAGGAAGAGAAATTCACCACTCGTTTCCCATGACTCTTTTTCAGCCTCGCACCGTTCGGCTAAACCACCAGACCCTGAAGCTACTCAAATATTGGACGTGGCAGTTTGTCATCATACGCCCAGTTTGTTCTGTTTTGATGATAACTCTACAAGCACTGGGGCTGTACCCCAGTTGGTTGAGCTGGACCTTCACTTTAATTCTTAACCTTTCGGTTTCTCTAGCATTGTACTCTCTAGTGGTGTTTTACCATGTGTTTGCAAAGGAATTGGCACCGCATTCACCCCTTGCAAAGTTCCTGTGCATCAAGGGAATTGTCTTCTTCGTCTTTTGGCAGGGAGTGGTCATTGACATATTAGCTGCTGTGGGCGTCATTCGATCTCACCATTTCTGGTTAGATGTGGAGCACGTCGAGGAAGCTATTCAGAATGTCTTGATATGTCTGGAGATGGTTGTGTTTTCTGTCCTCCAGCAGTATGCGTACCACGTTGCGCCTTACAGCGGAGACGTAGAAAAGAAGATGTTAAACAAGAAGAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

295

Amino Acids

33.94

Weight (kDa)

8.96

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 16 - 280 5.1e-76 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 613
AccII CGCG 1 cut(s) 24
AciI CCGC 4 cut(s) 24, 48, 617, 843
AclI AACGTT 1 cut(s) 218
AclWI GGATC 3 cut(s) 27, 39, 52
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 2 cut(s) 323, 440
AcyI GRCGYC 1 cut(s) 711
AfaI GTAC 3 cut(s) 509, 572, 824
AfiI CCNNNNNNNGG 1 cut(s) 842
AjiI CACGTC 2 cut(s) 441, 751
AluBI AGCT 4 cut(s) 424, 525, 701, 761
AluI AGCT 4 cut(s) 424, 525, 701, 761
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 3 cut(s) 27, 39, 52
AlwNI CAGNNNCTG 1 cut(s) 418
ApeKI GCWGC 2 cut(s) 173, 701
ApoI RAATTY 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 1 cut(s) 528
AsuHPI GGTGA 4 cut(s) 277, 350, 615, 716
AvaII GGWCC 1 cut(s) 528
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 652
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 2 cut(s) 160, 688
BccI CCATC 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 3 cut(s) 41, 563, 578
BisI GCNGC 2 cut(s) 174, 702
BlsI GCNGC 2 cut(s) 175, 703
Bme18I GGWCC 1 cut(s) 528
BmgBI CACGTC 2 cut(s) 441, 751
BmgT120I GGNCC 1 cut(s) 528
BmiI GGNNCC 3 cut(s) 46, 162, 615
BmrI ACTGGG 3 cut(s) 458, 507, 509
BmsI GCATC 2 cut(s) 51, 654
BmuI ACTGGG 3 cut(s) 458, 507, 509
BpiI GAAGAC 1 cut(s) 652
BpmI CTGGAG 2 cut(s) 794, 806
BsaHI GRCGYC 1 cut(s) 711
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 4 cut(s) 116, 464, 504, 513
BseLI CCNNNNNNNGG 1 cut(s) 842
BseNI ACTGG 4 cut(s) 116, 464, 504, 513
BseXI GCAGC 2 cut(s) 160, 688
Bsh1236I CGCG 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 750
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 840
BsmBI CGTCTC 1 cut(s) 840
BsmI GAATGC 1 cut(s) 619
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 3 cut(s) 19, 44, 719
BspACI CCGC 4 cut(s) 24, 48, 617, 843
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 46, 162, 615
BspPI GGATC 3 cut(s) 27, 39, 52
BspT107I GGYRCC 1 cut(s) 613
BsrI ACTGG 4 cut(s) 116, 464, 504, 513
BssMI GATC 3 cut(s) 19, 44, 719
BssNI GRCGYC 1 cut(s) 711
Bst4CI ACNGT 3 cut(s) 70, 87, 397
Bst6I CTCTTC 2 cut(s) 343, 869
BstACI GRCGYC 1 cut(s) 711
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 835
BstKTI GATC 3 cut(s) 22, 47, 722
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 3 cut(s) 19, 44, 719
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 160, 688
BstV2I GAAGAC 1 cut(s) 652
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtrI CACGTC 2 cut(s) 441, 751
BtsIMutI CAGTG 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 418
CfoI GCGC 1 cut(s) 835
Cfr13I GGNCC 1 cut(s) 528
CseI GACGC 1 cut(s) 700
Csp6I GTAC 3 cut(s) 508, 571, 823
CviAII CATG 3 cut(s) 226, 373, 593
CviQI GTAC 3 cut(s) 508, 571, 823
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 21, 46, 721
DpnII GATC 3 cut(s) 19, 44, 719
Eam1104I CTCTTC 2 cut(s) 343, 869
EarI CTCTTC 2 cut(s) 343, 869
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 528
Eco57I CTGAAG 2 cut(s) 323, 440
EcoRV GATATC 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 3 cut(s) 229, 376, 596
FatI CATG 3 cut(s) 225, 372, 592
Fnu4HI GCNGC 2 cut(s) 174, 702
Fsp4HI GCNGC 2 cut(s) 174, 702
FspBI CTAG 3 cut(s) 41, 563, 578
GlaI GCGC 1 cut(s) 834
GluI GCNGC 2 cut(s) 174, 702
GsuI CTGGAG 2 cut(s) 794, 806
HgaI GACGC 1 cut(s) 700
HhaI GCGC 1 cut(s) 835
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 3 cut(s) 229, 376, 596
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 179, 236, 376
HphI GGTGA 4 cut(s) 277, 350, 615, 716
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 768
Hpy188III TCNNGA 2 cut(s) 775, 785
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 755
HpyAV CCTTC 3 cut(s) 118, 127, 541
HpyCH4III ACNGT 3 cut(s) 70, 87, 397
HpyCH4IV ACGT 5 cut(s) 218, 440, 750, 828, 849
HpyCH4V TGCA 4 cut(s) 73, 602, 632, 645
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 5 cut(s) 218, 440, 750, 828, 849
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 3 cut(s) 229, 376, 596
HspAI GCGC 1 cut(s) 833
Kzo9I GATC 3 cut(s) 19, 44, 719
LmnI GCTCC 3 cut(s) 127, 166, 745
Lsp1109I GCAGC 2 cut(s) 160, 688
LweI GCATC 2 cut(s) 51, 654
MaeI CTAG 3 cut(s) 41, 563, 578
MaeII ACGT 5 cut(s) 218, 440, 750, 828, 849
MaeIII GTNAC 2 cut(s) 251, 296
MalI GATC 3 cut(s) 21, 46, 721
MboI GATC 3 cut(s) 19, 44, 719
MboII GAAGA 6 cut(s) 127, 316, 360, 652, 655, 871
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 750
MluCI AATT 5 cut(s) 144, 354, 540, 608, 654
MlyI GAGTC 3 cut(s) 173, 230, 370
MnlI CCTC 5 cut(s) 250, 399, 748, 818, 870
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 5 cut(s) 204, 243, 539, 546, 866
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 619
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 3 cut(s) 19, 44, 719
NlaIII CATG 3 cut(s) 229, 376, 596
NlaIV GGNNCC 3 cut(s) 46, 162, 615
PctI GAATGC 1 cut(s) 619
PdmI GAANNNNTTC 1 cut(s) 762
PkrI GCNGC 2 cut(s) 175, 703
PleI GAGTC 3 cut(s) 173, 230, 370
PpsI GAGTC 3 cut(s) 173, 230, 370
Psp1406I AACGTT 1 cut(s) 218
PspN4I GGNNCC 3 cut(s) 46, 162, 615
PspPI GGNCC 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 3 cut(s) 509, 572, 824
RsaNI GTAC 3 cut(s) 508, 571, 823
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 5 cut(s) 204, 243, 539, 546, 866
SatI GCNGC 2 cut(s) 174, 702
Sau3AI GATC 3 cut(s) 19, 44, 719
Sau96I GGNCC 1 cut(s) 528
SchI GAGTC 3 cut(s) 173, 230, 370
SduI GDGCHC 1 cut(s) 750
SfaNI GCATC 2 cut(s) 51, 654
SinI GGWCC 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 5 cut(s) 144, 354, 540, 608, 654
SsiI CCGC 4 cut(s) 24, 48, 617, 843
SspI AATATT 2 cut(s) 325, 434
SspMI CTAG 3 cut(s) 41, 563, 578
TaaI ACNGT 3 cut(s) 70, 87, 397
TaiI ACGT 5 cut(s) 221, 443, 753, 831, 852
TaqI TCGA 2 cut(s) 718, 753
TasI AATT 5 cut(s) 144, 354, 540, 608, 654
TatI WGTACW 1 cut(s) 570
Tru1I TTAA 5 cut(s) 204, 243, 539, 546, 866
Tru9I TTAA 5 cut(s) 204, 243, 539, 546, 866
TscAI CASTG 1 cut(s) 504
TseI GCWGC 2 cut(s) 173, 701
TspDTI ATGAA 2 cut(s) 214, 351
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 528
XapI RAATTY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 3 cut(s) 41, 563, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.