Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

432270 .. 435052

Gene Structure 2783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGGGGACGGAGTTACAGTCCATCACCACCTCCACCACCCCCAAGGGGAGGATATGGTAGGAGGGGACAACGAAGTCCTAGCCCCAGGGGTCGCTATAGCGGTGGTCGCGGTAGTGGTAGAGATCTTCCTACAAGTCTTCTAGTTCGTAACCTTCGCCATGATTGCAGGCCAGAAGATCTCCGCAGGCCATTTGGGCAATTTGGCGTGCTTAAGGACATCTACCTGCCAAAGGATTACTATACTGGGGAGCCTCGTGGTTTTGGTTTTGTCCAGTTTGTTGAGCCTTCTGATGCTGAAGAGGCTAAATATCAAATGGATGGTCAGCTTCTTCTTGGTCGGGAGGTAACTGTTGTATTTGCAGAGGAGAACAGGAAGAAGCCATCTGATATGAGGCATAGGGAGCGTGCAAGCTCCAGGACTACTAGTCGATATCGTGATCGAAGACGGTCTCCTCCTCGCTATTCACGTTCTCCACCTCCACGGCGTGCAAGATCTCGATCTCACAGCCGTGGTTATTATTCTCCTCCAAAACGAAGGGATTATTCCAGATCCGTCTCACCCCAAGAGAGAAGGTACAGCAGAGAGAAGTCGTTTTCTCGATCTCCTCCACCATATGAGGGGTCAAGGAGCCGTAGTCAGAGCCCAGTTAGGGGTCCAAGCTGGAGCGGAAGCAGAAGCCATAGTCCAAGGCGGAACATAAGAAGAAGCCAAAGCCCTATCAATGAAGGTCACCCGAGGGCACCAAATGGAGACAGATCTCCTAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

258

Amino Acids

29.59

Weight (kDa)

11.47

Isoelectric Point (pI)

111.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	47 - 116	8.4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	75
Acc36I	ACCTGC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	742
AccBSI	CCGCTC	1 cut(s)	669
AccII	CGCG	1 cut(s)	111
AciI	CCGC	5 cut(s)	102, 111, 184, 669, 694
AclWI	GGATC	1 cut(s)	546
AcuI	CTGAAG	1 cut(s)	318
AdeI	CACNNNGTG	1 cut(s)	488
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	6 cut(s)	47, 50, 232, 620, 652, 653
AflII	CTTAAG	1 cut(s)	212
AhdI	GACNNNNNGTC	1 cut(s)	426
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	2 cut(s)	86, 416
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	3 cut(s)	328, 414, 663
AluI	AGCT	3 cut(s)	328, 414, 663
Alw26I	GTCTC	3 cut(s)	456, 562, 747
AlwI	GGATC	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	736
AoxI	GGCC	2 cut(s)	170, 188
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	3 cut(s)	18, 552, 725
AvaI	CYCGRG	1 cut(s)	736
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	745
BanI	GGYRCC	1 cut(s)	742
BanII	GRGCYC	1 cut(s)	647
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	131, 451
BccI	CCATC	3 cut(s)	31, 314, 391
BceAI	ACGGC	3 cut(s)	495, 500, 618
BciT130I	CCWGG	2 cut(s)	88, 418
BcoDI	GTCTC	3 cut(s)	456, 562, 747
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	4 cut(s)	81, 143, 426, 765
BfmI	CTRYAG	1 cut(s)	97
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	196
BglII	AGATCT	4 cut(s)	124, 178, 494, 758
Bme1390I	CCNGG	2 cut(s)	88, 418
Bme18I	GGWCC	1 cut(s)	656
BmeRI	GACNNNNNGTC	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	4 cut(s)	252, 632, 657, 744
BmrFI	CCNGG	2 cut(s)	88, 418
BmrI	ACTGGG	2 cut(s)	255, 641
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	2 cut(s)	255, 641
BpiI	GAAGAC	2 cut(s)	131, 451
BpmI	CTGGAG	2 cut(s)	400, 685
BsaBI	GATNNNNATC	1 cut(s)	499
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	7 cut(s)	44, 86, 87, 482, 511, 689, 737
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 622, 652
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 50, 232, 620, 652, 653
Bse1I	ACTGG	3 cut(s)	250, 274, 647
Bse8I	GATNNNNATC	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	88, 418
BseDI	CCNNGG	7 cut(s)	44, 86, 87, 482, 511, 689, 737
BseGI	GGATG	1 cut(s)	325
BseJI	GATNNNNATC	1 cut(s)	499
BseLI	CCNNNNNNNGG	6 cut(s)	47, 50, 232, 620, 652, 653
BseNI	ACTGG	3 cut(s)	250, 274, 647
BseRI	GAGGAG	5 cut(s)	380, 444, 447, 516, 597
BseSI	GKGCMC	1 cut(s)	745
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	172, 190
BshNI	GGYRCC	1 cut(s)	742
BsiHKCI	CYCGRG	1 cut(s)	736
BslFI	GGGAC	2 cut(s)	21, 81
BslI	CCNNNNNNNGG	6 cut(s)	47, 50, 232, 620, 652, 653
BsmAI	GTCTC	3 cut(s)	456, 562, 747
BsmBI	CGTCTC	1 cut(s)	562
BsmFI	GGGAC	2 cut(s)	21, 81
BsnI	GGCC	2 cut(s)	172, 190
Bso31I	GGTCTC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	736
Bsp1286I	GDGCHC	2 cut(s)	647, 745
Bsp143I	GATC	8 cut(s)	124, 178, 439, 494, 500, 551, 602, 758
BspACI	CCGC	5 cut(s)	102, 111, 184, 669, 694
BspANI	GGCC	2 cut(s)	172, 190
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	4 cut(s)	252, 632, 657, 744
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	742
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	669
BsrI	ACTGG	3 cut(s)	250, 274, 647
BssECI	CCNNGG	7 cut(s)	44, 86, 87, 482, 511, 689, 737
BssMI	GATC	8 cut(s)	124, 178, 439, 494, 500, 551, 602, 758
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	2 cut(s)	44, 689
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	88, 418
Bst4CI	ACNGT	3 cut(s)	20, 352, 450
Bst6I	CTCTTC	1 cut(s)	294
BstAFI	CTTAAG	1 cut(s)	212
BstC8I	GCNNGC	6 cut(s)	170, 188, 209, 408, 412, 489
BstDSI	CCRYGG	2 cut(s)	482, 511
BstEII	GGTNACC	1 cut(s)	731
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	8 cut(s)	127, 181, 442, 497, 503, 554, 605, 761
BstMAI	GTCTC	3 cut(s)	456, 562, 747
BstMBI	GATC	8 cut(s)	124, 178, 439, 494, 500, 551, 602, 758
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 165, 196, 302, 403
BstNI	CCWGG	2 cut(s)	88, 418
BstPI	GGTNACC	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	86, 416
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	745
BstUI	CGCG	1 cut(s)	111
BstV2I	GAAGAC	2 cut(s)	131, 451
BstX2I	RGATCY	5 cut(s)	124, 178, 494, 551, 758
BstYI	RGATCY	5 cut(s)	124, 178, 494, 551, 758
BsuRI	GGCC	2 cut(s)	172, 190
BtgI	CCRYGG	2 cut(s)	482, 511
BtsCI	GGATG	1 cut(s)	325
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	6 cut(s)	170, 188, 209, 408, 412, 489
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	2 cut(s)	161, 771
CviQI	GTAC	1 cut(s)	577
DpnI	GATC	8 cut(s)	126, 180, 441, 496, 502, 553, 604, 760
DpnII	GATC	8 cut(s)	124, 178, 439, 494, 500, 551, 602, 758
DraIII	CACNNNGTG	1 cut(s)	488
DrdI	GACNNNNNNGTC	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	426
DseDI	GACNNNNNNGTC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	709
Eco130I	CCWWGG	2 cut(s)	44, 689
Eco24I	GRGCYC	1 cut(s)	647
Eco31I	GGTCTC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	736
Eco91I	GGTNACC	1 cut(s)	731
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	86, 416
EcoRV	GATATC	1 cut(s)	434
EcoT14I	CCWWGG	2 cut(s)	44, 689
EcoT38I	GRGCYC	1 cut(s)	647
ErhI	CCWWGG	2 cut(s)	44, 689
Esp3I	CGTCTC	1 cut(s)	562
FaeI	CATG	2 cut(s)	164, 774
FaqI	GGGAC	2 cut(s)	21, 81
FatI	CATG	2 cut(s)	160, 770
FauNDI	CATATG	1 cut(s)	616
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	647
FspBI	CTAG	4 cut(s)	81, 143, 426, 765
GsuI	CTGGAG	2 cut(s)	400, 685
HaeIII	GGCC	2 cut(s)	172, 190
Hin1II	CATG	2 cut(s)	164, 774
HphI	GGTGA	3 cut(s)	18, 552, 725
Hpy188I	TCNGA	3 cut(s)	292, 388, 642
Hpy188III	TCNNGA	5 cut(s)	341, 437, 498, 549, 600
HpyAV	CCTTC	5 cut(s)	164, 297, 531, 567, 722
HpyCH4III	ACNGT	3 cut(s)	20, 352, 450
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	4 cut(s)	168, 362, 410, 491
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 165, 196, 302, 403
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	2 cut(s)	164, 774
Kzo9I	GATC	8 cut(s)	124, 178, 439, 494, 500, 551, 602, 758
LmnI	GCTCC	5 cut(s)	250, 403, 419, 630, 666
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	4 cut(s)	81, 143, 426, 765
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	4 cut(s)	14, 149, 346, 731
MalI	GATC	8 cut(s)	126, 180, 441, 496, 502, 553, 604, 760
MbiI	CCGCTC	1 cut(s)	669
MboI	GATC	8 cut(s)	124, 178, 439, 494, 500, 551, 602, 758
MboII	GAAGA	8 cut(s)	119, 131, 188, 311, 323, 388, 456, 717
MflI	RGATCY	5 cut(s)	124, 178, 494, 551, 758
MhlI	GDGCHC	2 cut(s)	647, 745
MluCI	AATT	1 cut(s)	200
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	510
MspCI	CTTAAG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	88, 418
MvaI	CCWGG	2 cut(s)	88, 418
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	5 cut(s)	108, 165, 196, 302, 403
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	8 cut(s)	124, 178, 439, 494, 500, 551, 602, 758
NlaIII	CATG	2 cut(s)	164, 774
NlaIV	GGNNCC	4 cut(s)	252, 632, 657, 744
NmuCI	GTSAC	1 cut(s)	731
OliI	CACNNNNGTG	1 cut(s)	510
PasI	CCCWGGG	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	466
PfoI	TCCNGGA	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	86, 416
PspEI	GGTNACC	1 cut(s)	731
PspGI	CCWGG	2 cut(s)	86, 416
PspN4I	GGNNCC	4 cut(s)	252, 632, 657, 744
PspPI	GGNCC	1 cut(s)	656
PsuI	RGATCY	5 cut(s)	124, 178, 494, 551, 758
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	1 cut(s)	213
Sau3AI	GATC	8 cut(s)	124, 178, 439, 494, 500, 551, 602, 758
Sau96I	GGNCC	1 cut(s)	656
ScrFI	CCNGG	2 cut(s)	88, 418
SduI	GDGCHC	2 cut(s)	647, 745
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	5 cut(s)	102, 111, 184, 669, 694
SspMI	CTAG	4 cut(s)	81, 143, 426, 765
StyD4I	CCNGG	2 cut(s)	86, 416
StyI	CCWWGG	2 cut(s)	44, 689
TaaI	ACNGT	3 cut(s)	20, 352, 450
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	4 cut(s)	430, 442, 499, 601
TasI	AATT	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	731
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	1 cut(s)	741
TspGWI	ACGGA	2 cut(s)	25, 544
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	656
XagI	CCTNNNNNAGG	1 cut(s)	230
XspI	CTAG	4 cut(s)	81, 143, 426, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.