Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Forward (+)

9203531 .. 9204536

Gene Structure 1006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCAAGGCTTTGCGAACAAGCAAGCAGTGGCCACGACAGTTTCCTCACGGAAGGCTACATTCTACAGTCGGTCACGATCAACATTGTGGACAAAGGGAGAGACCTCCAATAATTTCATTAATGTTCAAGAAATCTTCCTTGATTGTGACCGAGACTCCATAATATACCTTGGGAAGCCTGATGGACCTACTTGCCACACAGGCTCAGAGACGTGCTATTACACCCCAGTGCTTGATTTGTTGGAACGCCGACAGGAGGAAGAACATAAATTGGCATTGACCACCTTGTACTCATTAGAATCGACAATTGCCAAGCGAAAAGAAGAATTAGAAGTTCCACAGGGTGGAAAGCCCTCGTGGACTCGGCGTCTACTATCTGATGAGAAGTTGTTGTGCTCAAAAATCAGGGAAGAGGCGGATGAGCTATGCCGAACACTAGAGGAGAACGAAGACAGGCTGCGTGCTGCCTCAGAGATGGCAGATGTACTTTATCATGGCATGGCTTTGCTGGCCTGTAAAGGCGTGAAAATGGAAGAGGTTTTGGAAATTCTTCGGCGTAGATTTTCTCAGTCGGGTATCGAGGAAAAGAGAAATCGCAAGTCACAAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

204

Amino Acids

23.26

Weight (kDa)

6.37

Isoelectric Point (pI)

71.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	1 - 74	7.6e-28	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	98 - 187	8.5e-15	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	370
AciI	CCGC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	367
AdeI	CACNNNGTG	1 cut(s)	344
AfaI	GTAC	2 cut(s)	290, 486
AfiI	CCNNNNNNNGG	2 cut(s)	256, 344
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	366
AjiI	CACGTC	1 cut(s)	213
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	3 cut(s)	95, 147, 203
AoxI	GGCC	2 cut(s)	30, 510
ApeKI	GCWGC	2 cut(s)	457, 464
ApoI	RAATTY	1 cut(s)	546
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	549
AspS9I	GGNCC	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	32
BauI	CACGAG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	2 cut(s)	444, 451
BccI	CCATC	2 cut(s)	176, 469
BcoDI	GTCTC	3 cut(s)	95, 147, 203
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	64
BglI	GCCNNNNNGGC	1 cut(s)	201
BisI	GCNGC	2 cut(s)	458, 465
BlsI	GCNGC	2 cut(s)	459, 466
Bme18I	GGWCC	1 cut(s)	185
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	367
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 344
Bse1I	ACTGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	2 cut(s)	256, 344
BseMII	CTCAG	3 cut(s)	219, 483, 581
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	444, 451
BshFI	GGCC	2 cut(s)	32, 512
BsiHKAI	GWGCWC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	256, 344
BsmAI	GTCTC	3 cut(s)	95, 147, 203
BsmBI	CGTCTC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	32, 512
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	2 cut(s)	32, 512
BspCNI	CTCAG	3 cut(s)	218, 482, 580
BspTNI	GGTCTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	77
BssNI	GRCGYC	1 cut(s)	367
BssSI	CACGAG	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	40, 68
Bst6I	CTCTTC	2 cut(s)	405, 528
BstACI	GRCGYC	1 cut(s)	367
BstC8I	GCNNGC	3 cut(s)	24, 462, 510
BstDEI	CTNAG	3 cut(s)	205, 469, 567
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	3 cut(s)	95, 147, 203
BstMBI	GATC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 509
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	444, 451
BstV2I	GAAGAC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	32, 512
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 234
Cac8I	GCNNGC	3 cut(s)	24, 462, 510
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	289, 485
CviAII	CATG	2 cut(s)	494, 499
CviQI	GTAC	2 cut(s)	289, 485
DdeI	CTNAG	3 cut(s)	205, 469, 567
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
DraIII	CACNNNGTG	1 cut(s)	344
DriI	GACNNNNNGTC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	405, 528
Eam1105I	GACNNNNNGTC	1 cut(s)	366
EarI	CTCTTC	2 cut(s)	405, 528
EciI	GGCGGA	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	2 cut(s)	497, 502
FaiI	YATR	6 cut(s)	161, 166, 267, 427, 495, 500
FatI	CATG	2 cut(s)	493, 498
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	458, 465
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	458, 465
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	2 cut(s)	458, 465
HaeIII	GGCC	2 cut(s)	32, 512
HgaI	GACGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	2 cut(s)	497, 502
HinfI	GANTC	3 cut(s)	155, 299, 361
Hpy166II	GTNNAC	3 cut(s)	90, 360, 371
Hpy188I	TCNGA	3 cut(s)	208, 379, 472
Hpy188III	TCNNGA	2 cut(s)	75, 128
Hpy8I	GTNNAC	3 cut(s)	90, 360, 371
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	40, 68
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 509
HpyF3I	CTNAG	3 cut(s)	205, 469, 567
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	497, 502
Kzo9I	GATC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	186, 192, 239, 240, 326, 391, 439, 494, 526
Lsp1109I	GCAGC	2 cut(s)	444, 451
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	72, 146, 600
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MboII	GAAGA	7 cut(s)	127, 272, 335, 422, 461, 542, 545
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	398
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	5 cut(s)	112, 269, 306, 326, 546
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	149, 355
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	9 cut(s)	55, 115, 250, 364, 406, 433, 478, 529, 574
Mox20I	TGGCCA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	32
MunI	CAATTG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	201, 509
NdeII	GATC	1 cut(s)	77
NlaIII	CATG	2 cut(s)	497, 502
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	3 cut(s)	72, 146, 600
OliI	CACNNNNGTG	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	459, 466
PleI	GAGTC	2 cut(s)	149, 355
PpsI	GAGTC	2 cut(s)	149, 355
PshBI	ATTAAT	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	290, 486
RsaNI	GTAC	2 cut(s)	289, 485
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	458, 465
Sau3AI	GATC	1 cut(s)	77
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	149, 355
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	7 cut(s)	107, 171, 190, 215, 287, 426, 540
SfcI	CTRYAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	5 cut(s)	112, 269, 306, 326, 546
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	437
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	40, 68
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	302, 579
TaqII	GACCGA	2 cut(s)	60, 165
TasI	AATT	5 cut(s)	112, 269, 306, 326, 546
TatI	WGTACW	2 cut(s)	288, 484
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	33, 234
TseFI	GTSAC	3 cut(s)	72, 146, 600
TseI	GCWGC	2 cut(s)	457, 464
Tsp45I	GTSAC	3 cut(s)	72, 146, 600
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	33, 234
Van91I	CCANNNNNTGG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	546
XmiI	GTMKAC	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.