Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Forward (+)

20230000 .. 20231951

Gene Structure 1952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGTATTTCTCGAGATTCCATGCACAAGAGACGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGCGAAAGTACGAGCTCGGTAGGCAACCTGCTAACACCAAGTTGTCAAGCAACAAGACTGTGAGGAGGATCAGGGTTCGAGGTGGAAATGTTAAGTGGCGTGCTTTGAGGCTTGACACTGGAAATTTCTCCTGGGGTAGCGAGGCCGTGACCCGCAAAACCCGTCTTCTTGATGTTGTGTACAATGCATCTAACAATGAGTTGGTCCGTACTCAAACTTTGGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCATTCAAGCAGTGGTACCTCCAGCACTATGGAGTTGAAATTGGCCGCAAGAAGAAAACTGCTGCCGCTGCAAAGAAAGAAGCAGAGGATGGTGAGGCACCTGCTGCTGCTGCTGCTGCTGCTGCTGAGGAGGCAAAGAAGAGCAACCATGTAGCCAGAAAGCTGGAGAAGCGTCAACAGACTCGCACCTTGGACCAGCATATTGAAGAACAATTTGGCGGTGGTCGTCTGTTGGCTTGTATTTCATCACGACCTGGTCAGTGTGGCCGTTGCGATGGATATATCTTGGAGGGCAGAGAGCTGGAGTTCTACATGAAGAAGCTCCAGAGGAAGAAGGGGAAGGGAGCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

227

Amino Acids

25.31

Weight (kDa)

10.46

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	5 - 204	2.2e-53	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	2 cut(s)	106, 433
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	2 cut(s)	339, 421
AciI	CCGC	4 cut(s)	223, 370, 390, 543
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	2 cut(s)	367, 589
AcsI	RAATTY	1 cut(s)	193
AfaI	GTAC	4 cut(s)	80, 251, 280, 341
AgsI	TTSAA	3 cut(s)	331, 362, 530
AjiI	CACGTC	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	200, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	5 cut(s)	85, 487, 625, 646, 671
AluI	AGCT	5 cut(s)	85, 487, 625, 646, 671
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	3 cut(s)	213, 367, 589
ApoI	RAATTY	1 cut(s)	193
Asp718I	GGTACC	1 cut(s)	339
AspS9I	GGNCC	2 cut(s)	274, 517
AsuHPI	GGTGA	2 cut(s)	304, 428
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	274, 517
BanI	GGYRCC	2 cut(s)	339, 421
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	407, 593
BceAI	ACGGC	2 cut(s)	200, 576
BciT130I	CCWGG	2 cut(s)	202, 579
BcoDI	GTCTC	1 cut(s)	25
BfuAI	ACCTGC	2 cut(s)	106, 433
Bme1390I	CCNGG	2 cut(s)	202, 579
Bme18I	GGWCC	2 cut(s)	274, 517
BmeT110I	CYCGRG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	274, 517
BmiI	GGNNCC	2 cut(s)	341, 423
BmrFI	CCNGG	2 cut(s)	202, 579
BmsI	GCATC	2 cut(s)	266, 307
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	5 cut(s)	63, 329, 509, 632, 647
Bpu10I	CCTNAGC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	201, 513
Bse1I	ACTGG	2 cut(s)	46, 193
BseBI	CCWGG	2 cut(s)	202, 579
BseDI	CCNNGG	2 cut(s)	201, 513
BseGI	GGATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	2 cut(s)	46, 193
BseRI	GAGGAG	2 cut(s)	148, 467
BshFI	GGCC	3 cut(s)	215, 369, 591
BshNI	GGYRCC	2 cut(s)	339, 421
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	3 cut(s)	215, 369, 591
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	4 cut(s)	223, 370, 390, 543
BspANI	GGCC	3 cut(s)	215, 369, 591
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	341, 423
BspMI	ACCTGC	2 cut(s)	106, 433
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	458
BspT107I	GGYRCC	2 cut(s)	339, 421
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	46, 193
BssECI	CCNNGG	2 cut(s)	201, 513
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	202, 579
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	290, 458
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	138
BstNI	CCWGG	2 cut(s)	202, 579
BstSCI	CCNGG	2 cut(s)	200, 577
BstV2I	GAAGAC	1 cut(s)	227
BstXI	CCANNNNNNTGG	2 cut(s)	353, 487
BsuRI	GGCC	3 cut(s)	215, 369, 591
BtgZI	GCGATG	1 cut(s)	612
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	4 cut(s)	39, 186, 341, 590
BveI	ACCTGC	2 cut(s)	106, 433
Cac8I	GCNNGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	274, 517
CseI	GACGC	1 cut(s)	485
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	4 cut(s)	79, 250, 279, 340
CviAII	CATG	3 cut(s)	22, 473, 637
CviQI	GTAC	4 cut(s)	79, 250, 279, 340
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	367, 589
Eam1104I	CTCTTC	2 cut(s)	290, 458
EarI	CTCTTC	2 cut(s)	290, 458
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	274, 517
Eco53kI	GAGCTC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	200, 577
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	25, 476, 640
FaiI	YATR	6 cut(s)	23, 354, 474, 525, 606, 638
FatI	CATG	3 cut(s)	21, 472, 636
FauI	CCCGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	87
GsuI	CTGGAG	5 cut(s)	63, 329, 509, 632, 647
HaeIII	GGCC	3 cut(s)	215, 369, 591
HgaI	GACGC	1 cut(s)	485
Hin1II	CATG	3 cut(s)	25, 476, 640
HincII	GTYRAC	1 cut(s)	500
HindII	GTYRAC	1 cut(s)	500
HinfI	GANTC	2 cut(s)	17, 505
HphI	GGTGA	2 cut(s)	304, 428
Hpy166II	GTNNAC	2 cut(s)	250, 500
Hpy188III	TCNNGA	5 cut(s)	12, 14, 239, 573, 649
Hpy8I	GTNNAC	2 cut(s)	250, 500
HpyAV	CCTTC	3 cut(s)	49, 652, 658
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	25, 257, 320, 395
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	25, 476, 640
KpnI	GGTACC	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	138
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	2 cut(s)	651, 668
LweI	GCATC	2 cut(s)	266, 307
MabI	ACCWGGT	1 cut(s)	577
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	9 cut(s)	64, 79, 227, 307, 388, 475, 542, 652, 667
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	193, 363, 536
MlyI	GAGTC	1 cut(s)	499
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	2 cut(s)	162, 679
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	202, 579
MvaI	CCWGG	2 cut(s)	202, 579
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	3 cut(s)	25, 476, 640
NlaIV	GGNNCC	2 cut(s)	341, 423
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	579
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	200, 577
PspGI	CCWGG	2 cut(s)	200, 577
PspN4I	GGNNCC	2 cut(s)	341, 423
PspPI	GGNCC	2 cut(s)	274, 517
PsyI	GACNNNGTC	1 cut(s)	579
RsaI	GTAC	4 cut(s)	80, 251, 280, 341
RsaNI	GTAC	4 cut(s)	79, 250, 279, 340
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	162, 679
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	274, 517
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	2 cut(s)	202, 579
SduI	GDGCHC	1 cut(s)	87
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	2 cut(s)	266, 307
Sfr274I	CTCGAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	274, 517
SlaI	CTCGAG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	3 cut(s)	193, 363, 536
SsiI	CCGC	4 cut(s)	223, 370, 390, 543
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	200, 577
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	13, 148
TasI	AATT	3 cut(s)	193, 363, 536
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	372, 392
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	162, 679
Tru9I	TTAA	2 cut(s)	162, 679
TscAI	CASTG	4 cut(s)	46, 193, 341, 590
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	558, 653
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	4 cut(s)	46, 193, 341, 590
Tth111I	GACNNNGTC	1 cut(s)	579
VpaK11BI	GGWCC	2 cut(s)	274, 517
XapI	RAATTY	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.