pycom11g24970

Sucrose-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002332
Physical Location & Seq
Reverse (-)
27818136 .. 27820473
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1452 bp
ATGGATTTGAAAGGTAGGGTACTTGTGGTTTGCTTGCTGCTGTCTGCTTTTTTCCTGAGTGCTTTTGTTGCTGTGGCTTTGGAAGATCCGGAGCTGAAGCAGTGTAAGCACCAGTGCAAACACCAGCGAGGGTTTGAGGAGTGGCAGAAGAAACAGTGCGAGAGGAAGTGCGAGGACTACATCAAGCAGAAGAGCGAGCAGGAGGAGCAGCGGGGGAGGTGGGAAGGAGGAGGAGGGGAAGGAGGAAGTTTTTACATACGTGAGAGAGAGGAGTTCGAGGGGCGAGGGCAACAACAACAAGAAGAAGGAGACGAGAATCCTTACTTCTTCGAAGACCAGCATTTCGAGACGAGGGTTCAAACTGAGGAAGGTAGGGTTCAGGTTCTGCAGAAATTCAACGAAAGGTCTGATCTTCTGCGTGGGATTGAGAATTTTCGAGTCGGGTTTCTTGTCACGGAACCTCATGCATTCGTTGCTCCAACTCATCTTGATGCCGATTGTGAGGAGAAGAAAGAGAGCCATAATCTTGAACGTGGAGATCTCTTTAGGATTCCGGCAGGCACCCCATTTTATATACTCAACAGAGACGAGAATGAAGGGCTCCATATTGTCGAACTTCTCAAAACAGTCTCTACCCCCGGAGAATACGAGGCGTTTCACTCGGCCGGCGGCCAAGACCCCGAATCCTTTTTCAAAGCATTCAGCCCCGAAGTTCTCCAAGCCGCTTTTAAGCAGAGGCGAGGCAGCATCATAAGGGCCTCCAAAGAACAAGTACAGAGAATGAGCCAGCAGCATGGTCATGGCGGCAGTGAAGGCATTTGGCCGCTGCCTTTCCATGGCGGTGAATCATCTTCAAAAGATTCATTCAATCTTTTTAAGAAGCATGCTTCCCAAGAAAACAAGTTTGGCCGTCTCTTTGAAGCTGATTTCAAAGACTTCAAGCAGCTTCAGGAGTTTGACCTCCTCGTCTCCTTTGCTAACATCACCAGGGGTGCTATGGAAGGTCCATTTTTCAACTCAAGGGCTACAAAGATATCAGTTGTGCTAGATGGTGAAGGCCACTTTGAGATGGCATGCCCGCATGTTGGTAAACAACGCCAGCACAGTGGAAGGTCACAGCAGAGACAAAAGAGCAGCCCAACTTACCAAAAGATGAGCGGAGACTTGAGGCGCGGAGCGGTGTTTGTTGCCCCCGCCGGCCATCCTGTCACAATCATTGCCTCAAGGAACAATAACCTCCAACTCCTCTGCTTCGAAGTCAATGCTCGAGACAACATTAGGTTTCCACTGGCAGGGAAGAACAATGTGGTGAGCCAGTTCGATAGGCAAGCCAAGGAGCTGTCGTTTAACGTGCCAGCGAGCGAGGTGGAGAGTATTTTCAACAACCAGAAAGATGAGTTGTTTTTCGAAGGACCAAATGAGCAGCCTCAGCACGGCTGGGTTTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0016020 GO:0019863 GO:0019865 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

484

Amino Acids

55.16

Weight (kDa)

5.92

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 289 - 454 2.1e-24 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 560
AccBSI CCGCTC 2 cut(s) 1158, 1178
AccII CGCG 1 cut(s) 1173
AccIII TCCGGA 1 cut(s) 88
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 5 cut(s) 663, 670, 821, 907, 1198
AcsI RAATTY 2 cut(s) 392, 430
AcuI CTGAAG 2 cut(s) 116, 932
AfaI GTAC 2 cut(s) 21, 774
AfiI CCNNNNNNNGG 4 cut(s) 836, 1085, 1292, 1433
AjnI CCWGG 1 cut(s) 986
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AluBI AGCT 4 cut(s) 94, 923, 946, 1339
AluI AGCT 4 cut(s) 94, 923, 946, 1339
Alw26I GTCTC 9 cut(s) 303, 341, 579, 634, 917, 973, 1117, 1155, 1263
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 385
Ama87I CYCGRG 1 cut(s) 1266
Aor13HI TCCGGA 1 cut(s) 88
AoxI GGCC 7 cut(s) 663, 670, 756, 821, 907, 1057, 1198
ApeKI GCWGC 8 cut(s) 37, 208, 744, 790, 826, 943, 1134, 1423
ApoI RAATTY 2 cut(s) 392, 430
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 1 cut(s) 1173
AspS9I GGNCC 3 cut(s) 756, 1004, 1412
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 4 cut(s) 854, 976, 1064, 1321
AsuII TTCGAA 3 cut(s) 330, 1254, 1407
AvaI CYCGRG 1 cut(s) 1266
AvaII GGWCC 2 cut(s) 1004, 1412
BanI GGYRCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 1428
BbvI GCAGC 8 cut(s) 24, 220, 756, 802, 813, 955, 1146, 1435
BccI CCATC 3 cut(s) 1043, 1063, 1209
BceAI ACGGC 2 cut(s) 894, 1450
BcgI CGANNNNNNTGC 2 cut(s) 1244, 1278
BciT130I CCWGG 1 cut(s) 988
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 9 cut(s) 303, 341, 579, 634, 917, 973, 1117, 1155, 1263
BfaI CTAG 1 cut(s) 1046
BfmI CTRYAG 1 cut(s) 386
BglII AGATCT 1 cut(s) 538
Bme1390I CCNGG 2 cut(s) 639, 988
Bme18I GGWCC 2 cut(s) 1004, 1412
BmeT110I CYCGRG 1 cut(s) 1266
BmgT120I GGNCC 3 cut(s) 756, 1004, 1412
BmiI GGNNCC 3 cut(s) 459, 562, 602
BmrFI CCNGG 2 cut(s) 639, 988
BmsI GCATC 2 cut(s) 481, 756
BpiI GAAGAC 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 1428
Bpu14I TTCGAA 3 cut(s) 330, 1254, 1407
BpuEI CTTGAG 3 cut(s) 1003, 1186, 1207
BpuMI CCSGG 1 cut(s) 639
BsaAI YACGTR 1 cut(s) 260
BsaJI CCNNGG 4 cut(s) 637, 835, 987, 1332
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 1328, 1358
Bsc4I CCNNNNNNNGG 4 cut(s) 836, 1085, 1292, 1433
Bse118I RCCGGY 2 cut(s) 665, 1196
Bse1I ACTGG 3 cut(s) 112, 1293, 1315
Bse3DI GCAATG 1 cut(s) 1215
BseAI TCCGGA 1 cut(s) 88
BseBI CCWGG 1 cut(s) 988
BseDI CCNNGG 4 cut(s) 637, 835, 987, 1332
BseGI GGATG 1 cut(s) 1201
BseLI CCNNNNNNNGG 4 cut(s) 836, 1085, 1292, 1433
BseMI GCAATG 1 cut(s) 1215
BseMII CTCAG 3 cut(s) 47, 354, 1442
BseNI ACTGG 3 cut(s) 112, 1293, 1315
BseRI GAGGAG 8 cut(s) 152, 218, 243, 246, 284, 518, 953, 1235
BseX3I CGGCCG 1 cut(s) 663
BseXI GCAGC 8 cut(s) 24, 220, 756, 802, 813, 955, 1146, 1435
BseYI CCCAGC 1 cut(s) 1437
Bsh1236I CGCG 1 cut(s) 1173
Bsh1285I CGRYCG 1 cut(s) 666
BshFI GGCC 7 cut(s) 665, 672, 758, 823, 909, 1059, 1200
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 666
BsiHKCI CYCGRG 1 cut(s) 1266
BsiSI CCGG 5 cut(s) 89, 554, 639, 666, 1197
BslI CCNNNNNNNGG 4 cut(s) 836, 1085, 1292, 1433
BsmAI GTCTC 9 cut(s) 303, 341, 579, 634, 917, 973, 1117, 1155, 1263
BsmBI CGTCTC 5 cut(s) 303, 341, 579, 917, 973
BsmI GAATGC 2 cut(s) 467, 698
BsnI GGCC 7 cut(s) 665, 672, 758, 823, 909, 1059, 1200
BsoBI CYCGRG 1 cut(s) 1266
Bsp119I TTCGAA 3 cut(s) 330, 1254, 1407
Bsp1286I GDGCHC 1 cut(s) 603
Bsp13I TCCGGA 1 cut(s) 88
Bsp143I GATC 3 cut(s) 85, 409, 538
Bsp19I CCATGG 1 cut(s) 835
BspANI GGCC 7 cut(s) 665, 672, 758, 823, 909, 1059, 1200
BspCNI CTCAG 3 cut(s) 48, 355, 1441
BspEI TCCGGA 1 cut(s) 88
BspFNI CGCG 1 cut(s) 1173
BspLI GGNNCC 3 cut(s) 459, 562, 602
BspMAI CTGCAG 1 cut(s) 390
BspPI GGATC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 185
BspT104I TTCGAA 3 cut(s) 330, 1254, 1407
BspT107I GGYRCC 1 cut(s) 560
BsrBI CCGCTC 2 cut(s) 1158, 1178
BsrDI GCAATG 1 cut(s) 1215
BsrFI RCCGGY 2 cut(s) 665, 1196
BsrI ACTGG 3 cut(s) 112, 1293, 1315
BssAI RCCGGY 2 cut(s) 665, 1196
BssECI CCNNGG 4 cut(s) 637, 835, 987, 1332
BssMI GATC 3 cut(s) 85, 409, 538
BssT1I CCWWGG 2 cut(s) 835, 1332
Bst2UI CCWGG 1 cut(s) 988
Bst4CI ACNGT 3 cut(s) 156, 628, 1106
Bst6I CTCTTC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 473
BstBAI YACGTR 1 cut(s) 260
BstBI TTCGAA 3 cut(s) 330, 1254, 1407
BstDEI CTNAG 3 cut(s) 56, 363, 1428
BstDSI CCRYGG 1 cut(s) 835
BstF5I GGATG 1 cut(s) 1201
BstFNI CGCG 1 cut(s) 1173
BstHHI GCGC 1 cut(s) 1173
BstKTI GATC 3 cut(s) 88, 412, 541
BstMAI GTCTC 9 cut(s) 303, 341, 579, 634, 917, 973, 1117, 1155, 1263
BstMBI GATC 3 cut(s) 85, 409, 538
BstMCI CGRYCG 1 cut(s) 666
BstMWI GCNNNNNNNGC 6 cut(s) 68, 106, 205, 473, 813, 1429
BstNI CCWGG 1 cut(s) 988
BstNSI RCATGY 3 cut(s) 887, 1077, 1085
BstSCI CCNGG 2 cut(s) 637, 986
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 1 cut(s) 1173
BstV1I GCAGC 8 cut(s) 24, 220, 756, 802, 813, 955, 1146, 1435
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 2 cut(s) 85, 538
BstXI CCANNNNNNTGG 2 cut(s) 794, 1106
BstYI RGATCY 2 cut(s) 85, 538
BstZI CGGCCG 1 cut(s) 663
BsuRI GGCC 7 cut(s) 665, 672, 758, 823, 909, 1059, 1200
BtgI CCRYGG 1 cut(s) 835
BtsCI GGATG 1 cut(s) 1201
BtsI GCAGTG 2 cut(s) 107, 814
BtsIMutI CAGTG 6 cut(s) 107, 119, 161, 814, 1111, 1286
CaiI CAGNNNCTG 1 cut(s) 385
CfoI GCGC 1 cut(s) 1173
Cfr10I RCCGGY 2 cut(s) 665, 1196
Cfr13I GGNCC 3 cut(s) 756, 1004, 1412
Csp6I GTAC 2 cut(s) 20, 773
CviAII CATG 8 cut(s) 464, 794, 800, 836, 884, 1074, 1082, 1449
CviQI GTAC 2 cut(s) 20, 773
DdeI CTNAG 3 cut(s) 56, 363, 1428
DpnI GATC 3 cut(s) 87, 411, 540
DpnII GATC 3 cut(s) 85, 409, 538
DrdI GACNNNNNNGTC 1 cut(s) 965
DseDI GACNNNNNNGTC 1 cut(s) 965
EaeI YGGCCR 5 cut(s) 663, 670, 821, 907, 1198
EagI CGGCCG 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EclXI CGGCCG 1 cut(s) 663
Eco130I CCWWGG 2 cut(s) 835, 1332
Eco24I GRGCYC 1 cut(s) 603
Eco32I GATATC 1 cut(s) 1035
Eco47I GGWCC 2 cut(s) 1004, 1412
Eco52I CGGCCG 1 cut(s) 663
Eco57I CTGAAG 2 cut(s) 116, 932
Eco88I CYCGRG 1 cut(s) 1266
EcoO109I RGGNCCY 1 cut(s) 756
EcoRII CCWGG 1 cut(s) 986
EcoRV GATATC 1 cut(s) 1035
EcoT14I CCWWGG 2 cut(s) 835, 1332
EcoT22I ATGCAT 2 cut(s) 469, 1450
EcoT38I GRGCYC 1 cut(s) 603
ErhI CCWWGG 2 cut(s) 835, 1332
Esp3I CGTCTC 5 cut(s) 303, 341, 579, 917, 973
FaeI CATG 8 cut(s) 467, 797, 803, 839, 887, 1077, 1085, 1452
FatI CATG 8 cut(s) 463, 793, 799, 835, 883, 1073, 1081, 1448
FauI CCCGC 3 cut(s) 204, 1086, 1201
FokI GGATG 1 cut(s) 1188
FriOI GRGCYC 1 cut(s) 603
FspBI CTAG 1 cut(s) 1046
GlaI GCGC 1 cut(s) 1172
GsaI CCCAGC 1 cut(s) 1441
HaeIII GGCC 7 cut(s) 665, 672, 758, 823, 909, 1059, 1200
HapII CCGG 5 cut(s) 89, 554, 639, 666, 1197
HhaI GCGC 1 cut(s) 1173
Hin1II CATG 8 cut(s) 467, 797, 803, 839, 887, 1077, 1085, 1452
Hin6I GCGC 1 cut(s) 1171
HinP1I GCGC 1 cut(s) 1171
HinfI GANTC 6 cut(s) 316, 438, 550, 683, 845, 860
HpaII CCGG 5 cut(s) 89, 554, 639, 666, 1197
HphI GGTGA 4 cut(s) 854, 976, 1064, 1321
Hpy166II GTNNAC 1 cut(s) 1091
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 7 cut(s) 55, 89, 346, 488, 527, 950, 1268
Hpy8I GTNNAC 1 cut(s) 1091
HpyCH4III ACNGT 3 cut(s) 156, 628, 1106
HpyCH4IV ACGT 3 cut(s) 259, 532, 1350
HpyCH4V TGCA 4 cut(s) 117, 388, 467, 1448
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 106, 205, 473, 813, 1429
HpyF3I CTNAG 3 cut(s) 56, 363, 1428
HpySE526I ACGT 3 cut(s) 259, 532, 1350
Hsp92II CATG 8 cut(s) 467, 797, 803, 839, 887, 1077, 1085, 1452
HspAI GCGC 1 cut(s) 1171
Kpn2I TCCGGA 1 cut(s) 88
KroI GCCGGC 2 cut(s) 665, 1196
KroNI GCCGGC 2 cut(s) 667, 1198
Kzo9I GATC 3 cut(s) 85, 409, 538
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 6 cut(s) 91, 205, 481, 606, 1175, 1336
Lsp1109I GCAGC 8 cut(s) 24, 220, 756, 802, 813, 955, 1146, 1435
LweI GCATC 2 cut(s) 481, 756
MaeI CTAG 1 cut(s) 1046
MaeII ACGT 3 cut(s) 259, 532, 1350
MaeIII GTNAC 3 cut(s) 451, 1113, 1207
MalI GATC 3 cut(s) 87, 411, 540
MbiI CCGCTC 2 cut(s) 1158, 1178
MboI GATC 3 cut(s) 85, 409, 538
MflI RGATCY 2 cut(s) 85, 538
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 2 cut(s) 392, 430
MlyI GAGTC 1 cut(s) 447
MmeI TCCRAC 2 cut(s) 503, 1264
Mph1103I ATGCAT 2 cut(s) 469, 1450
MroI TCCGGA 1 cut(s) 88
MroNI GCCGGC 2 cut(s) 665, 1196
MseI TTAA 3 cut(s) 729, 876, 1347
MslI CAYNNNNRTG 3 cut(s) 489, 798, 840
MspA1I CMGCKG 2 cut(s) 211, 826
MspI CCGG 5 cut(s) 89, 554, 639, 666, 1197
MspR9I CCNGG 2 cut(s) 639, 988
Mva1269I GAATGC 2 cut(s) 467, 698
MvaI CCWGG 1 cut(s) 988
MvnI CGCG 1 cut(s) 1173
MwoI GCNNNNNNNGC 6 cut(s) 68, 106, 205, 473, 813, 1429
NaeI GCCGGC 2 cut(s) 667, 1198
NciI CCSGG 1 cut(s) 639
NcoI CCATGG 1 cut(s) 835
NdeII GATC 3 cut(s) 85, 409, 538
NgoMIV GCCGGC 2 cut(s) 665, 1196
NlaIII CATG 8 cut(s) 467, 797, 803, 839, 887, 1077, 1085, 1452
NlaIV GGNNCC 3 cut(s) 459, 562, 602
NmeAIII GCCGAG 1 cut(s) 641
NmuCI GTSAC 3 cut(s) 451, 1113, 1207
NsiI ATGCAT 2 cut(s) 469, 1450
NspI RCATGY 3 cut(s) 887, 1077, 1085
NspV TTCGAA 3 cut(s) 330, 1254, 1407
PaeI GCATGC 2 cut(s) 887, 1077
PaeR7I CTCGAG 1 cut(s) 1266
PciSI GCTCTTC 1 cut(s) 185
PctI GAATGC 2 cut(s) 467, 698
PdiI GCCGGC 2 cut(s) 667, 1198
PfeI GAWTC 5 cut(s) 316, 550, 683, 845, 860
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
Ppu21I YACGTR 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 986
PspFI CCCAGC 1 cut(s) 1437
PspGI CCWGG 1 cut(s) 986
PspN4I GGNNCC 3 cut(s) 459, 562, 602
PspPI GGNCC 3 cut(s) 756, 1004, 1412
PstI CTGCAG 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 385
PsuI RGATCY 2 cut(s) 85, 538
RsaI GTAC 2 cut(s) 21, 774
RsaNI GTAC 2 cut(s) 20, 773
RseI CAYNNNNRTG 3 cut(s) 489, 798, 840
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 729, 876, 1347
Sau3AI GATC 3 cut(s) 85, 409, 538
Sau96I GGNCC 3 cut(s) 756, 1004, 1412
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 2 cut(s) 639, 988
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 2 cut(s) 481, 756
SfcI CTRYAG 1 cut(s) 386
Sfr274I CTCGAG 1 cut(s) 1266
SfuI TTCGAA 3 cut(s) 330, 1254, 1407
SinI GGWCC 2 cut(s) 1004, 1412
SlaI CTCGAG 1 cut(s) 1266
SmiMI CAYNNNNRTG 3 cut(s) 489, 798, 840
SmlI CTYRAG 4 cut(s) 1018, 1165, 1222, 1266
SmoI CTYRAG 4 cut(s) 1018, 1165, 1222, 1266
SphI GCATGC 2 cut(s) 887, 1077
Sse9I AATT 2 cut(s) 392, 430
SspMI CTAG 1 cut(s) 1046
StyD4I CCNGG 2 cut(s) 637, 986
StyI CCWWGG 2 cut(s) 835, 1332
TaaI ACNGT 3 cut(s) 156, 628, 1106
TaiI ACGT 3 cut(s) 262, 535, 1353
TaqI TCGA 9 cut(s) 276, 330, 345, 436, 612, 1254, 1267, 1320, 1407
TasI AATT 2 cut(s) 392, 430
TatI WGTACW 1 cut(s) 772
TauI GCSGC 4 cut(s) 672, 725, 807, 826
TfiI GAWTC 5 cut(s) 316, 550, 683, 845, 860
Tru1I TTAA 3 cut(s) 729, 876, 1347
Tru9I TTAA 3 cut(s) 729, 876, 1347
TscAI CASTG 6 cut(s) 107, 119, 161, 814, 1111, 1293
TseFI GTSAC 3 cut(s) 451, 1113, 1207
TseI GCWGC 8 cut(s) 37, 208, 744, 790, 826, 943, 1134, 1423
Tsp45I GTSAC 3 cut(s) 451, 1113, 1207
TspDTI ATGAA 2 cut(s) 609, 852
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 6 cut(s) 107, 119, 161, 814, 1111, 1293
VpaK11BI GGWCC 2 cut(s) 1004, 1412
XapI RAATTY 2 cut(s) 392, 430
XceI RCATGY 3 cut(s) 887, 1077, 1085
XcmI CCANNNNNNNNNTGG 1 cut(s) 994
XhoI CTCGAG 1 cut(s) 1266
XspI CTAG 1 cut(s) 1046
Zsp2I ATGCAT 2 cut(s) 469, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.