Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

28802008 .. 28803118

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCTCAGGGTTGCATACAGAAAAAATGTCGCCATTTCAAGAGCTATTTTGGCTTCCCCGAACATCAAGATGGGGTTTTCATCCCATGCTGGGAGACTTGAAGGCAAAGTGGCGCTGATTACCGGAGCAGCAAGCGGCATAGGTAAAGCAACCGCATCGAAATTCATCAGCAATGGCGCCAAAGTTGTCCTTGCCGATATCCAACAGGACCTCGGCCAGCTTACGGCGAAAGAGCTCGGTCCAAACGCGACGTTCATTGCCTGTGATGTCACGAAAGAGTCCGACATCTCCAACGCCGTTGATTTCACTATCTCCAAACATAGCCAGCTTGACATTATGCACAGCAATGCTGGGGTACCCTGCTACACACCCCCGAGCATGGTGGACCTCGACCTAGCAGCATTCGACCGCGTCATGAGCATTAACGTGCGTGGAGTCGTGGCAGGAATGAAGCACGCATCGCGCGTGATGATCCCGCGTAAAACTGGCTCCATTCTTTGCACAGCCAGCGTGACGGGACTGATGGGAGGACTCGCACAGCACACATATTCCGTGTCCAAGTCTGCTGTCATTGGCATTGTGAAGTCCGTGGCTTCAGAGCTATGCAGGCATGGAATCCGTGTCAACTGCATATCGCCATTTGCGATTCCAACCCCGTTTGTGATCGAGGAACTGACTCAAATTTTCCCGGGGGTTGATAGACAACGGCTGATGGAAATAACGCACAGTGCTGGCGTCTTGGCCGGCGCAAAATGCGAACCCAACGACGTTGCCAACGCTGCACTTTACCTAGCTTCAGATGAGGCTAAATATGTTAGTGGCCATAATTTGGTTGTTGATGGAGGTTTTACATCTTTCAAGAATTTGGAATTTCCTGCACCAGATCAGGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

299

Amino Acids

31.45

Weight (kDa)

8.7

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	36 - 223	3.3e-49	short chain dehydrogenase
KR	PF08659	38 - 195	1.1e-08	KR domain
adh_short_C2	PF13561	42 - 284	1.2e-58	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	355
AccB1I	GGYRCC	2 cut(s)	176, 355
AccB7I	CCANNNNNTGG	1 cut(s)	829
AccII	CGCG	5 cut(s)	248, 411, 463, 465, 478
AciI	CCGC	4 cut(s)	135, 153, 409, 476
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	3 cut(s)	214, 741, 820
AcsI	RAATTY	4 cut(s)	161, 681, 862, 869
AcuI	CTGAAG	2 cut(s)	579, 780
AcyI	GRCGYC	2 cut(s)	177, 735
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	4 cut(s)	90, 223, 379, 829
AgsI	TTSAA	3 cut(s)	39, 101, 859
AluBI	AGCT	6 cut(s)	44, 220, 235, 328, 601, 794
AluI	AGCT	6 cut(s)	44, 220, 235, 328, 601, 794
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	466
Ama87I	CYCGRG	2 cut(s)	373, 688
AoxI	GGCC	3 cut(s)	214, 741, 820
ApeKI	GCWGC	3 cut(s)	128, 398, 779
ApoI	RAATTY	4 cut(s)	161, 681, 862, 869
Asp718I	GGTACC	1 cut(s)	355
AspLEI	GCGC	4 cut(s)	115, 179, 465, 749
AspS9I	GGNCC	3 cut(s)	208, 239, 385
AsuC2I	CCSGG	2 cut(s)	689, 690
AvaI	CYCGRG	2 cut(s)	373, 688
AvaII	GGWCC	3 cut(s)	208, 239, 385
BalI	TGGCCA	1 cut(s)	822
BanI	GGYRCC	2 cut(s)	176, 355
BanII	GRGCYC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	140, 410, 766
BccI	CCATC	4 cut(s)	64, 517, 706, 833
BceAI	ACGGC	3 cut(s)	240, 281, 722
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BcnI	CCSGG	2 cut(s)	689, 690
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	395, 791
BfoI	RGCGCY	2 cut(s)	116, 180
BisI	GCNGC	4 cut(s)	129, 136, 399, 780
BlsI	GCNGC	4 cut(s)	130, 137, 400, 781
Bme1390I	CCNGG	2 cut(s)	689, 690
Bme18I	GGWCC	3 cut(s)	208, 239, 385
BmeT110I	CYCGRG	2 cut(s)	373, 688
BmgT120I	GGNCC	3 cut(s)	208, 239, 385
BmiI	GGNNCC	3 cut(s)	178, 357, 490
BmrFI	CCNGG	2 cut(s)	689, 690
BmsI	GCATC	2 cut(s)	164, 467
Bpu10I	CCTNAGC	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	689, 690
BsaHI	GRCGYC	2 cut(s)	177, 735
BsaJI	CCNNGG	4 cut(s)	211, 588, 688, 689
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 223, 379, 829
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	3 cut(s)	178, 255, 352
BseDI	CCNNGG	4 cut(s)	211, 588, 688, 689
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	4 cut(s)	90, 223, 379, 829
BseMI	GCAATG	3 cut(s)	178, 255, 352
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	140, 410, 766
BseYI	CCCAGC	2 cut(s)	89, 350
BsgI	GTGCAG	2 cut(s)	765, 861
Bsh1236I	CGCG	5 cut(s)	248, 411, 463, 465, 478
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	3 cut(s)	216, 743, 822
BshNI	GGYRCC	2 cut(s)	176, 355
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	2 cut(s)	373, 688
BsiSI	CCGG	3 cut(s)	123, 689, 744
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	4 cut(s)	90, 223, 379, 829
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	216, 743, 822
BsoBI	CYCGRG	2 cut(s)	373, 688
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	471, 663, 883
BspACI	CCGC	4 cut(s)	135, 153, 409, 476
BspANI	GGCC	3 cut(s)	216, 743, 822
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	5 cut(s)	248, 411, 463, 465, 478
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	178, 357, 490
BspPI	GGATC	1 cut(s)	466
BspT107I	GGYRCC	2 cut(s)	176, 355
BsrDI	GCAATG	3 cut(s)	178, 255, 352
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	4 cut(s)	211, 588, 688, 689
BssMI	GATC	3 cut(s)	471, 663, 883
BssNI	GRCGYC	2 cut(s)	177, 735
Bst4CI	ACNGT	1 cut(s)	728
BstACI	GRCGYC	2 cut(s)	177, 735
BstC8I	GCNNGC	8 cut(s)	133, 218, 326, 456, 508, 608, 733, 745
BstDEI	CTNAG	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	5 cut(s)	248, 411, 463, 465, 478
BstH2I	RGCGCY	2 cut(s)	116, 180
BstHHI	GCGC	4 cut(s)	115, 179, 465, 749
BstKTI	GATC	3 cut(s)	474, 666, 886
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	471, 663, 883
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 417, 460, 507, 607, 753, 779
BstSCI	CCNGG	2 cut(s)	687, 688
BstUI	CGCG	5 cut(s)	248, 411, 463, 465, 478
BstV1I	GCAGC	3 cut(s)	140, 410, 766
BsuRI	GGCC	3 cut(s)	216, 743, 822
BtgI	CCRYGG	1 cut(s)	588
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	733
Cac8I	GCNNGC	8 cut(s)	133, 218, 326, 456, 508, 608, 733, 745
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	4 cut(s)	115, 179, 465, 749
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	3 cut(s)	208, 239, 385
Cfr9I	CCCGGG	1 cut(s)	688
CseI	GACGC	2 cut(s)	400, 724
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	4 cut(s)	86, 379, 415, 611
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	1 cut(s)	5
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	3 cut(s)	473, 665, 885
DpnII	GATC	3 cut(s)	471, 663, 883
EaeI	YGGCCR	3 cut(s)	214, 741, 820
Ecl136II	GAGCTC	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	208, 239, 385
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	579, 780
Eco88I	CYCGRG	2 cut(s)	373, 688
EcoICRI	GAGCTC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
FaeI	CATG	4 cut(s)	89, 382, 418, 614
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	4 cut(s)	85, 378, 414, 610
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	129, 136, 399, 780
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	129, 136, 399, 780
FspBI	CTAG	2 cut(s)	395, 791
GlaI	GCGC	4 cut(s)	114, 178, 464, 748
GluI	GCNGC	4 cut(s)	129, 136, 399, 780
GsaI	CCCAGC	2 cut(s)	93, 354
HaeII	RGCGCY	2 cut(s)	116, 180
HaeIII	GGCC	3 cut(s)	216, 743, 822
HapII	CCGG	3 cut(s)	123, 689, 744
HgaI	GACGC	2 cut(s)	400, 724
HhaI	GCGC	4 cut(s)	115, 179, 465, 749
Hin1I	GRCGYC	2 cut(s)	177, 735
Hin1II	CATG	4 cut(s)	89, 382, 418, 614
Hin6I	GCGC	4 cut(s)	113, 177, 463, 747
HinP1I	GCGC	4 cut(s)	113, 177, 463, 747
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	6 cut(s)	278, 435, 531, 615, 646, 676
HpaII	CCGG	3 cut(s)	123, 689, 744
Hpy166II	GTNNAC	2 cut(s)	385, 625
Hpy188I	TCNGA	3 cut(s)	283, 598, 799
Hpy188III	TCNNGA	5 cut(s)	39, 67, 271, 415, 859
Hpy8I	GTNNAC	2 cut(s)	385, 625
Hpy99I	CGWCG	2 cut(s)	253, 770
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	728
HpyCH4IV	ACGT	3 cut(s)	251, 426, 768
HpyCH4V	TGCA	8 cut(s)	14, 340, 501, 606, 630, 782, 878, 892
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 417, 460, 507, 607, 753, 779
HpyF3I	CTNAG	1 cut(s)	5
HpySE526I	ACGT	3 cut(s)	251, 426, 768
Hsp92I	GRCGYC	2 cut(s)	177, 735
Hsp92II	CATG	4 cut(s)	89, 382, 418, 614
HspAI	GCGC	4 cut(s)	113, 177, 463, 747
KasI	GGCGCC	1 cut(s)	176
KpnI	GGTACC	1 cut(s)	359
KroI	GCCGGC	1 cut(s)	743
KroNI	GCCGGC	1 cut(s)	745
Kzo9I	GATC	3 cut(s)	471, 663, 883
LmnI	GCTCC	2 cut(s)	125, 494
Lsp1109I	GCAGC	3 cut(s)	140, 410, 766
LweI	GCATC	2 cut(s)	164, 467
MaeI	CTAG	2 cut(s)	395, 791
MaeII	ACGT	3 cut(s)	251, 426, 768
MaeIII	GTNAC	2 cut(s)	268, 511
MalI	GATC	3 cut(s)	473, 665, 885
MboI	GATC	3 cut(s)	471, 663, 883
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	5 cut(s)	161, 681, 826, 862, 869
MluNI	TGGCCA	1 cut(s)	822
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	4 cut(s)	287, 444, 525, 670
MmeI	TCCRAC	4 cut(s)	226, 306, 315, 674
MnlI	CCTC	6 cut(s)	221, 398, 521, 661, 796, 836
Mox20I	TGGCCA	1 cut(s)	822
MroNI	GCCGGC	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	2 cut(s)	423, 895
MslI	CAYNNNNRTG	3 cut(s)	68, 345, 425
Msp20I	TGGCCA	1 cut(s)	822
MspI	CCGG	3 cut(s)	123, 689, 744
MspR9I	CCNGG	2 cut(s)	689, 690
Mva1269I	GAATGC	1 cut(s)	401
MvnI	CGCG	5 cut(s)	248, 411, 463, 465, 478
MwoI	GCNNNNNNNGC	7 cut(s)	50, 417, 460, 507, 607, 753, 779
NaeI	GCCGGC	1 cut(s)	745
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	2 cut(s)	689, 690
NdeII	GATC	3 cut(s)	471, 663, 883
NgoMIV	GCCGGC	1 cut(s)	743
NlaIII	CATG	4 cut(s)	89, 382, 418, 614
NlaIV	GGNNCC	3 cut(s)	178, 357, 490
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	268, 511
PagI	TCATGA	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	2 cut(s)	462, 641
PctI	GAATGC	1 cut(s)	401
PdiI	GCCGGC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	615, 646
PflFI	GACNNNGTC	1 cut(s)	410
PflMI	CCANNNNNTGG	1 cut(s)	829
PkrI	GCNGC	4 cut(s)	130, 137, 400, 781
PleI	GAGTC	4 cut(s)	286, 443, 525, 670
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	4 cut(s)	286, 443, 525, 670
PpuMI	RGGWCCY	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	208
PspFI	CCCAGC	2 cut(s)	89, 350
PspN4I	GGNNCC	3 cut(s)	178, 357, 490
PspPI	GGNCC	3 cut(s)	208, 239, 385
PspPPI	RGGWCCY	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
RseI	CAYNNNNRTG	3 cut(s)	68, 345, 425
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	423, 895
SatI	GCNGC	4 cut(s)	129, 136, 399, 780
Sau3AI	GATC	3 cut(s)	471, 663, 883
Sau96I	GGNCC	3 cut(s)	208, 239, 385
SchI	GAGTC	4 cut(s)	287, 444, 525, 670
ScrFI	CCNGG	2 cut(s)	689, 690
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	164, 467
SfoI	GGCGCC	1 cut(s)	178
SinI	GGWCC	3 cut(s)	208, 239, 385
SmaI	CCCGGG	1 cut(s)	690
SmiMI	CAYNNNNRTG	3 cut(s)	68, 345, 425
Sse9I	AATT	5 cut(s)	161, 681, 826, 862, 869
SsiI	CCGC	4 cut(s)	135, 153, 409, 476
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	395, 791
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	687, 688
TaaI	ACNGT	1 cut(s)	728
TaiI	ACGT	3 cut(s)	254, 429, 771
TaqI	TCGA	4 cut(s)	158, 390, 405, 666
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	161, 681, 826, 862, 869
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	615, 646
Tru1I	TTAA	2 cut(s)	423, 895
Tru9I	TTAA	2 cut(s)	423, 895
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	2 cut(s)	268, 511
TseI	GCWGC	3 cut(s)	128, 398, 779
Tsp45I	GTSAC	2 cut(s)	268, 511
TspDTI	ATGAA	4 cut(s)	69, 154, 244, 464
TspGWI	ACGGA	3 cut(s)	541, 577, 608
TspMI	CCCGGG	1 cut(s)	688
TspRI	CASTG	1 cut(s)	733
Tth111I	GACNNNGTC	1 cut(s)	410
Van91I	CCANNNNNTGG	1 cut(s)	829
VpaK11BI	GGWCC	3 cut(s)	208, 239, 385
XapI	RAATTY	4 cut(s)	161, 681, 862, 869
XmaI	CCCGGG	1 cut(s)	688
XspI	CTAG	2 cut(s)	395, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.