pycom12561g00210

Blue copper protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012561
OG0005440
Physical Location & Seq
Reverse (-)
300175 .. 303638
3464 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 843 bp
ATGTATATACATATACAGTTGATGCCCTTTGTTCTTCAATATCCCCTCTCTCTGTTGTCAGTTTTCACCAACTCCAACCAAAAAACAATGGAACCATTACTACAGAGCAAGTACACTAGCTTGTTTTTTCTCCTTGTCCTTCTTCTTCCTCTTGTTATTCCTTCGTTTTCAGGAATATCAGGCGTTGAAGCTTACAAGAATTATACAGTCGGTGACTCTTCCGGTTGGTATGAATCTGTGAACTATCAGAAATGGGTTGCCGCCAAGACATTCAGCTTGGGAGATTTTCTCATTTTTAATACGGACACCAACCACTCAGTTGTGCAAACATATAACTTGACGACATACAAGCTGTGCGATTACAACGATGCTCTAGAAAACGACACAATGCAATGGTCGGCAGCTGACCCGTCAAACACGGCAGTACGCAAGGTGTCGGTGGCAGTGCCTTTGGAAAAGGAAGGGATGAACTATTTCTTTTCAGGGGATTATGATGGCGACCAATGCAAGAACGGGCAGCACTTTAAGATCAGCGTCGCTCACGGACAAGGGTTGCCAAAGAGTTTACAAAACCCAACCACACCCACACAGGACCAGTCCCCAGGTCCAGCAACAGCAAGCAGTCCCGGCGGGTCCCCATCTCCAGGTGGTGACGGCACTGATGATGGTTCTGTCCCGGATACAATTGTTCCTGCCAGTTTCGACCATCCCAAAGCGGATGACACTGCCACTGGCGATCATGATAAAGATTCATCTGATCGATCACTTTGTGTGAAGCACAATCACGGGATGCTATTTAGGGTTTTCATGTTGTTAGGGTTTCTCTACTGCTGCCTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

281

Amino Acids

30.79

Weight (kDa)

4.98

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 78 - 173 6.4e-16 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 261, 630, 716
AdeI CACNNNGTG 1 cut(s) 770
AfaI GTAC 2 cut(s) 113, 426
AfiI CCNNNNNNNGG 1 cut(s) 644
AgsI TTSAA 2 cut(s) 38, 188
AjnI CCWGG 2 cut(s) 601, 643
AluBI AGCT 5 cut(s) 120, 191, 276, 352, 404
AluI AGCT 5 cut(s) 120, 191, 276, 352, 404
ApeKI GCWGC 3 cut(s) 401, 517, 831
Asp700I GAANNNNTTC 1 cut(s) 473
AspS9I GGNCC 3 cut(s) 592, 605, 633
AsuC2I CCSGG 2 cut(s) 627, 677
AsuHPI GGTGA 3 cut(s) 58, 224, 662
AvaII GGWCC 3 cut(s) 592, 605, 633
BaeI ACNNNNGTAYC 2 cut(s) 672, 705
BbvI GCAGC 3 cut(s) 413, 529, 818
BccI CCATC 4 cut(s) 488, 646, 659, 714
BceAI ACGGC 2 cut(s) 435, 670
BciT130I CCWGG 2 cut(s) 603, 645
BciVI GTATCC 1 cut(s) 673
BcnI CCSGG 2 cut(s) 627, 677
BfaI CTAG 2 cut(s) 117, 374
BfmI CTRYAG 1 cut(s) 101
BfuI GTATCC 1 cut(s) 673
BisI GCNGC 4 cut(s) 261, 402, 518, 832
BlsI GCNGC 4 cut(s) 262, 403, 519, 833
Bme1390I CCNGG 4 cut(s) 603, 627, 645, 677
Bme18I GGWCC 3 cut(s) 592, 605, 633
BmgT120I GGNCC 3 cut(s) 592, 605, 633
BmiI GGNNCC 3 cut(s) 93, 634, 635
BmrFI CCNGG 4 cut(s) 603, 627, 645, 677
BmsI GCATC 3 cut(s) 12, 358, 780
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpmI CTGGAG 1 cut(s) 627
BpuMI CCSGG 2 cut(s) 627, 677
Bsa29I ATCGAT 1 cut(s) 760
BsaJI CCNNGG 1 cut(s) 601
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse1I ACTGG 3 cut(s) 595, 696, 736
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 2 cut(s) 603, 645
BseCI ATCGAT 1 cut(s) 760
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 4 cut(s) 471, 706, 724, 795
BseLI CCNNNNNNNGG 1 cut(s) 644
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 3 cut(s) 595, 696, 736
BseXI GCAGC 3 cut(s) 413, 529, 818
BshVI ATCGAT 1 cut(s) 760
BsiSI CCGG 3 cut(s) 222, 627, 677
BslFI GGGAC 4 cut(s) 583, 609, 619, 659
BslI CCNNNNNNNGG 1 cut(s) 644
BsmFI GGGAC 4 cut(s) 583, 609, 619, 659
Bsp143I GATC 4 cut(s) 528, 736, 757, 761
BspACI CCGC 3 cut(s) 261, 630, 716
BspCNI CTCAG 1 cut(s) 329
BspDI ATCGAT 1 cut(s) 760
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 3 cut(s) 93, 634, 635
BsrDI GCAATG 1 cut(s) 398
BsrI ACTGG 3 cut(s) 595, 696, 736
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 4 cut(s) 528, 736, 757, 761
Bst2UI CCWGG 2 cut(s) 603, 645
Bst4CI ACNGT 2 cut(s) 18, 208
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 1 cut(s) 316
BstF5I GGATG 4 cut(s) 471, 706, 724, 795
BstKTI GATC 4 cut(s) 531, 739, 760, 764
BstMBI GATC 4 cut(s) 528, 736, 757, 761
BstMWI GCNNNNNNNGC 2 cut(s) 504, 627
BstNI CCWGG 2 cut(s) 603, 645
BstSCI CCNGG 4 cut(s) 601, 625, 643, 675
BstSFI CTRYAG 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 413, 529, 818
Bsu15I ATCGAT 1 cut(s) 760
BsuI GTATCC 1 cut(s) 673
BsuTUI ATCGAT 1 cut(s) 760
BtsCI GGATG 4 cut(s) 471, 706, 724, 795
BtsI GCAGTG 2 cut(s) 450, 723
BtsIMutI CAGTG 4 cut(s) 450, 657, 723, 729
Cac8I GCNNGC 1 cut(s) 619
CciI TCATGA 1 cut(s) 739
Cfr13I GGNCC 3 cut(s) 592, 605, 633
ClaI ATCGAT 1 cut(s) 760
CseI GACGC 1 cut(s) 523
Csp6I GTAC 2 cut(s) 112, 425
CviAII CATG 2 cut(s) 740, 808
CviJI RGCY 5 cut(s) 120, 191, 276, 352, 404
CviKI_1 RGCY 5 cut(s) 120, 191, 276, 352, 404
CviQI GTAC 2 cut(s) 112, 425
DdeI CTNAG 1 cut(s) 316
DpnI GATC 4 cut(s) 530, 738, 759, 763
DpnII GATC 4 cut(s) 528, 736, 757, 761
DraIII CACNNNGTG 1 cut(s) 770
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco47I GGWCC 3 cut(s) 592, 605, 633
EcoO109I RGGNCCY 1 cut(s) 633
EcoRII CCWGG 2 cut(s) 601, 643
FaeI CATG 2 cut(s) 743, 811
FaqI GGGAC 4 cut(s) 583, 609, 619, 659
FatI CATG 2 cut(s) 739, 807
FauI CCCGC 1 cut(s) 623
Fnu4HI GCNGC 4 cut(s) 261, 402, 518, 832
FokI GGATG 4 cut(s) 478, 693, 731, 802
Fsp4HI GCNGC 4 cut(s) 261, 402, 518, 832
FspBI CTAG 2 cut(s) 117, 374
GluI GCNGC 4 cut(s) 261, 402, 518, 832
GsuI CTGGAG 1 cut(s) 627
HapII CCGG 3 cut(s) 222, 627, 677
HgaI GACGC 1 cut(s) 523
Hin1II CATG 2 cut(s) 743, 811
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 3 cut(s) 215, 233, 749
HpaII CCGG 3 cut(s) 222, 627, 677
HphI GGTGA 3 cut(s) 58, 224, 662
Hpy166II GTNNAC 3 cut(s) 114, 241, 566
Hpy188I TCNGA 2 cut(s) 249, 757
Hpy188III TCNNGA 3 cut(s) 171, 374, 740
Hpy8I GTNNAC 3 cut(s) 114, 241, 566
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 3 cut(s) 149, 171, 455
HpyCH4III ACNGT 2 cut(s) 18, 208
HpyCH4V TGCA 3 cut(s) 325, 391, 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 504, 627
HpyF3I CTNAG 1 cut(s) 316
Hsp92II CATG 2 cut(s) 743, 811
KflI GGGWCCC 1 cut(s) 633
Kzo9I GATC 4 cut(s) 528, 736, 757, 761
Lsp1109I GCAGC 3 cut(s) 413, 529, 818
LweI GCATC 3 cut(s) 12, 358, 780
MaeI CTAG 2 cut(s) 117, 374
MaeIII GTNAC 2 cut(s) 212, 650
MalI GATC 4 cut(s) 530, 738, 759, 763
MboI GATC 4 cut(s) 528, 736, 757, 761
MboII GAAGA 4 cut(s) 26, 134, 137, 210
MfeI CAATTG 1 cut(s) 684
MluCI AATT 2 cut(s) 199, 684
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 2 cut(s) 56, 159
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 2 cut(s) 297, 525
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 3 cut(s) 222, 627, 677
MspR9I CCNGG 4 cut(s) 603, 627, 645, 677
MunI CAATTG 1 cut(s) 684
MvaI CCWGG 2 cut(s) 603, 645
MwoI GCNNNNNNNGC 2 cut(s) 504, 627
NciI CCSGG 2 cut(s) 627, 677
NdeII GATC 4 cut(s) 528, 736, 757, 761
NlaIII CATG 2 cut(s) 743, 811
NlaIV GGNNCC 3 cut(s) 93, 634, 635
NmuCI GTSAC 2 cut(s) 212, 650
PagI TCATGA 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 233, 749
PfoI TCCNGGA 1 cut(s) 675
PkrI GCNGC 4 cut(s) 262, 403, 519, 833
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 601, 643
PspGI CCWGG 2 cut(s) 601, 643
PspN4I GGNNCC 3 cut(s) 93, 634, 635
PspPI GGNCC 3 cut(s) 592, 605, 633
PspPPI RGGWCCY 1 cut(s) 633
PsrI GAACNNNNNNTAC 2 cut(s) 84, 116
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 2 cut(s) 113, 426
RsaNI GTAC 2 cut(s) 112, 425
SaqAI TTAA 2 cut(s) 297, 525
SatI GCNGC 4 cut(s) 261, 402, 518, 832
Sau3AI GATC 4 cut(s) 528, 736, 757, 761
Sau96I GGNCC 3 cut(s) 592, 605, 633
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 4 cut(s) 603, 627, 645, 677
SetI ASST 8 cut(s) 122, 193, 278, 354, 406, 435, 607, 649
SfaNI GCATC 3 cut(s) 12, 358, 780
SfcI CTRYAG 1 cut(s) 101
SinI GGWCC 3 cut(s) 592, 605, 633
Sse9I AATT 2 cut(s) 199, 684
SsiI CCGC 3 cut(s) 261, 630, 716
SspMI CTAG 2 cut(s) 117, 374
StyD4I CCNGG 4 cut(s) 601, 625, 643, 675
TaaI ACNGT 2 cut(s) 18, 208
TaqI TCGA 2 cut(s) 702, 760
TasI AATT 2 cut(s) 199, 684
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 2 cut(s) 233, 749
Tru1I TTAA 2 cut(s) 297, 525
Tru9I TTAA 2 cut(s) 297, 525
TscAI CASTG 4 cut(s) 450, 664, 730, 736
TseFI GTSAC 2 cut(s) 212, 650
TseI GCWGC 3 cut(s) 401, 517, 831
Tsp45I GTSAC 2 cut(s) 212, 650
TspDTI ATGAA 4 cut(s) 246, 482, 741, 796
TspGWI ACGGA 2 cut(s) 317, 558
TspRI CASTG 4 cut(s) 450, 664, 730, 736
VpaK11BI GGWCC 3 cut(s) 592, 605, 633
XbaI TCTAGA 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 2 cut(s) 117, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.