pycom12g22160

E3 ubiquitin protein ligase DRIP2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
23173069 .. 23177663
4595 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1380 bp
ATGGCGGCTGGTGATGGTGGTGGTCAGGTGGTGAAAGTCAAGAGGGCGAAACTGGAGGCATGCATGACGTGCCCTCTTTGTAATAAGCTGTTGAAGGAGGCTACAACTATTTCACTCTGCCTCCACACGTTTTGCAGGACGTGCATTTACGAGAAGTTATCAGATGAGGAGGGGGACTGCTGTCCCGTCTGTGAAATTGATCTCGGAATTTTACCTGTCGAAAAACTCAGGCCAGACCATAATTTGCACGATATTATAGCCAAGATATTTCCTGTTAAAGGAAAGAAAGTTGATGCACCTGAAGCTAACAAGCCTGAAGCTAATGATCCTGATGTTACGCCATCTTCGTTGCCAGTGAAAAGGAAGGAGAGATCATTATCTTCATTGGTAGTCAGTGCCCCCAAAGTTCCAGTGCAGTCAGGTATGACTGGAAAGAGATCAAGAGCTTTGTCAAGAAAGGGTGCTGCTTTACGAGGATGCAGTTTTTCTGCTGAAGAACCTGCGAAGAAGGATGATTCTACAGAAGACCATCCAGTGAGCTCTAACTCAACTGGTAATCTTGTTGAATTCGCACGAAATAAGAGCCAGGATTTGCTTGAGCATTCATATGAGCGAAATCCTAACAAAGATATGAACAATGACGTTGAAATAACAGAAGGGAAAGCTGACCTGTGGACTCCCTTAAACTGTCTTGTAGAGGCTGCTAACCGAACCAAGTCCTCGAAGCCAAATTCACAAGGGTTGCATGCCACGTCAGATCCAATCAATTCCCTTGATAATGAACTTTATATGTCTCAAAATAAGGCAGAAGGAGAATCGCCAAATGCTCTGGACTGCATCAGGAATGCATATACGCCCAAAACCAAAAAAAAGGAGGCCAACCAGAATGCAAGAGGAAAAAATAATAGTAATGGAGGAGGGGCATCAGGACCGGTGAAACGTAAAAGGGTGCGTGCAGCTAATCAGAAGAGGGTAGCAGCATCTGGGGAAGCAAGTGCCTCAACTCAACCTATGCTAGATGTATGTGGGGTTAAGTATAGAAATGTTCCCGTTTGGTTCTCCTTGGTAGCATCTGAAGACTGGAAAGGAGAAATTTCATTGCCACAGATATCAGCATGTTGCTTGAAAATAAAGGATGGTAAAATGCCTGTATCAATAATCCAGAAGTACCTTGCGATGAAACTTGAACTTAGCAGTGAAAATGAGGTGGAGATACTGTGTCGGGGTCAGCCAGTGCTTCCAACATGGCATCTAGAAACCCTAGTTGAGATGTGGTGCCGAACAGCACCAACAACGAAAAGGGTACCGGCAACAGTTGGCTCCTCGGCTAAAGATTTTGTAATGGTCCTCAATTATTGTCGTAGGGTTCCAAATCCCTGA

Protein Analysis

460

Amino Acids

50.11

Weight (kDa)

8.81

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 24 - 64 3.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 24 - 64 1.4e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 508
Acc65I GGTACC 1 cut(s) 1303
AccB1I GGYRCC 2 cut(s) 1275, 1303
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 320, 752
AcsI RAATTY 4 cut(s) 207, 566, 730, 1092
AcuI CTGAAG 4 cut(s) 321, 336, 513, 1095
AfaI GTAC 2 cut(s) 1169, 1305
AfiI CCNNNNNNNGG 1 cut(s) 278
AflIII ACRYGT 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 931
AgsI TTSAA 5 cut(s) 94, 566, 647, 1126, 1187
AjiI CACGTC 3 cut(s) 69, 141, 753
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 7 cut(s) 88, 305, 320, 446, 540, 665, 959
AluI AGCT 7 cut(s) 88, 305, 320, 446, 540, 665, 959
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 1 cut(s) 798
AlwI GGATC 2 cut(s) 320, 752
AlwNI CAGNNNCTG 1 cut(s) 983
AoxI GGCC 2 cut(s) 230, 876
ApeKI GCWGC 4 cut(s) 464, 701, 956, 977
ApoI RAATTY 4 cut(s) 207, 566, 730, 1092
AsiGI ACCGGT 1 cut(s) 931
Asp718I GGTACC 1 cut(s) 1303
AspS9I GGNCC 2 cut(s) 929, 1345
AsuHPI GGTGA 3 cut(s) 23, 43, 946
AvaII GGWCC 2 cut(s) 929, 1345
BaeGI GKGCMC 2 cut(s) 74, 400
BanI GGYRCC 2 cut(s) 1275, 1303
BanII GRGCYC 1 cut(s) 542
BbsI GAAGAC 2 cut(s) 531, 1083
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 4 cut(s) 451, 688, 968, 989
BccI CCATC 4 cut(s) 8, 349, 537, 1130
BciT130I CCWGG 1 cut(s) 587
BcoDI GTCTC 1 cut(s) 798
BfaI CTAG 3 cut(s) 1016, 1253, 1262
BfmI CTRYAG 1 cut(s) 519
BfuAI ACCTGC 1 cut(s) 508
BisI GCNGC 5 cut(s) 6, 465, 702, 957, 978
BlsI GCNGC 5 cut(s) 7, 466, 703, 958, 979
Bme1390I CCNGG 1 cut(s) 587
Bme18I GGWCC 2 cut(s) 929, 1345
BmgBI CACGTC 3 cut(s) 69, 141, 753
BmgT120I GGNCC 2 cut(s) 929, 1345
BmiI GGNNCC 4 cut(s) 1277, 1305, 1321, 1368
BmrFI CCNGG 1 cut(s) 587
BmsI GCATC 7 cut(s) 283, 467, 846, 932, 989, 1079, 1258
BoxI GACNNNNGTC 1 cut(s) 180
BpiI GAAGAC 2 cut(s) 531, 1083
BpmI CTGGAG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 1062, 1323
BsaWI WCCGGW 1 cut(s) 931
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 1202, 1232
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse118I RCCGGY 2 cut(s) 931, 1306
Bse1I ACTGG 8 cut(s) 57, 353, 410, 433, 533, 556, 1085, 1232
Bse3DI GCAATG 1 cut(s) 1097
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 2 cut(s) 1062, 1323
BseGI GGATG 4 cut(s) 482, 517, 529, 1141
BseJI GATNNNNATC 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 1 cut(s) 1097
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 8 cut(s) 57, 353, 410, 433, 533, 556, 1085, 1232
BseRI GAGGAG 3 cut(s) 182, 930, 1312
BseSI GKGCMC 2 cut(s) 74, 400
BseXI GCAGC 4 cut(s) 451, 688, 968, 989
BsgI GTGCAG 2 cut(s) 434, 975
BshFI GGCC 2 cut(s) 232, 878
BshNI GGYRCC 2 cut(s) 1275, 1303
BshTI ACCGGT 1 cut(s) 931
BsiHKAI GWGCWC 1 cut(s) 542
BsiSI CCGG 2 cut(s) 932, 1307
BslFI GGGAC 2 cut(s) 168, 188
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 798
BsmFI GGGAC 2 cut(s) 168, 188
BsmI GAATGC 3 cut(s) 601, 850, 892
BsnI GGCC 2 cut(s) 232, 878
Bsp1286I GDGCHC 3 cut(s) 74, 400, 542
Bsp143I GATC 5 cut(s) 199, 325, 371, 437, 757
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 232, 878
BspCNI CTCAG 1 cut(s) 240
BspLI GGNNCC 4 cut(s) 1277, 1305, 1321, 1368
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 2 cut(s) 320, 752
BspT107I GGYRCC 2 cut(s) 1275, 1303
BsrDI GCAATG 1 cut(s) 1097
BsrFI RCCGGY 2 cut(s) 931, 1306
BsrI ACTGG 8 cut(s) 57, 353, 410, 433, 533, 556, 1085, 1232
BssAI RCCGGY 2 cut(s) 931, 1306
BssECI CCNNGG 2 cut(s) 1062, 1323
BssMI GATC 5 cut(s) 199, 325, 371, 437, 757
BssT1I CCWWGG 1 cut(s) 1062
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 3 cut(s) 689, 1218, 1315
Bst6I CTCTTC 1 cut(s) 962
BstAPI GCANNNNNTGC 2 cut(s) 69, 141
BstC8I GCNNGC 3 cut(s) 61, 747, 954
BstDEI CTNAG 2 cut(s) 227, 1190
BstENI CCTNNNNNAGG 1 cut(s) 276
BstF5I GGATG 4 cut(s) 482, 517, 529, 1141
BstKTI GATC 5 cut(s) 202, 328, 374, 440, 760
BstMAI GTCTC 1 cut(s) 798
BstMBI GATC 5 cut(s) 199, 325, 371, 437, 757
BstMWI GCNNNNNNNGC 3 cut(s) 69, 141, 302
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 3 cut(s) 63, 749, 1119
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 585
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 2 cut(s) 74, 400
BstV1I GCAGC 4 cut(s) 451, 688, 968, 989
BstV2I GAAGAC 2 cut(s) 531, 1083
BstX2I RGATCY 1 cut(s) 757
BstYI RGATCY 1 cut(s) 757
BsuRI GGCC 2 cut(s) 232, 878
BtgZI GCGATG 1 cut(s) 1190
BtrI CACGTC 3 cut(s) 69, 141, 753
BtsCI GGATG 4 cut(s) 482, 517, 529, 1141
BtsI GCAGTG 1 cut(s) 1201
BtsIMutI CAGTG 6 cut(s) 360, 400, 417, 540, 1201, 1239
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 3 cut(s) 61, 747, 954
CaiI CAGNNNCTG 1 cut(s) 983
Cfr10I RCCGGY 2 cut(s) 931, 1306
Cfr13I GGNCC 2 cut(s) 929, 1345
Csp6I GTAC 2 cut(s) 1168, 1304
CspAI ACCGGT 1 cut(s) 931
CspCI CAANNNNNGTGG 2 cut(s) 113, 148
CviAII CATG 5 cut(s) 60, 64, 746, 1116, 1245
CviQI GTAC 2 cut(s) 1168, 1304
DdeI CTNAG 2 cut(s) 227, 1190
DpnI GATC 5 cut(s) 201, 327, 373, 439, 759
DpnII GATC 5 cut(s) 199, 325, 371, 437, 757
Eam1104I CTCTTC 1 cut(s) 962
EarI CTCTTC 1 cut(s) 962
Ecl136II GAGCTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 1062
Eco24I GRGCYC 1 cut(s) 542
Eco32I GATATC 1 cut(s) 1110
Eco47I GGWCC 2 cut(s) 929, 1345
Eco53kI GAGCTC 1 cut(s) 540
Eco57I CTGAAG 4 cut(s) 321, 336, 513, 1095
EcoICRI GAGCTC 1 cut(s) 540
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 585
EcoRV GATATC 1 cut(s) 1110
EcoT14I CCWWGG 1 cut(s) 1062
EcoT22I ATGCAT 2 cut(s) 65, 850
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 1 cut(s) 1062
FaeI CATG 5 cut(s) 63, 67, 749, 1119, 1248
FaqI GGGAC 2 cut(s) 168, 188
FatI CATG 5 cut(s) 59, 63, 745, 1115, 1244
FauNDI CATATG 1 cut(s) 607
Fnu4HI GCNGC 5 cut(s) 6, 465, 702, 957, 978
FokI GGATG 4 cut(s) 489, 516, 524, 1148
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 5 cut(s) 6, 465, 702, 957, 978
FspBI CTAG 3 cut(s) 1016, 1253, 1262
GluI GCNGC 5 cut(s) 6, 465, 702, 957, 978
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 2 cut(s) 232, 878
HapII CCGG 2 cut(s) 932, 1307
Hin1II CATG 5 cut(s) 63, 67, 749, 1119, 1248
HinfI GANTC 3 cut(s) 515, 676, 815
HpaII CCGG 2 cut(s) 932, 1307
HphI GGTGA 3 cut(s) 23, 43, 946
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 5 cut(s) 163, 206, 757, 966, 1075
Hpy188III TCNNGA 9 cut(s) 40, 329, 441, 453, 830, 841, 927, 1162, 1253
Hpy8I GTNNAC 1 cut(s) 675
HpyAV CCTTC 5 cut(s) 88, 358, 502, 650, 803
HpyCH4III ACNGT 3 cut(s) 689, 1218, 1315
HpyCH4IV ACGT 6 cut(s) 68, 128, 140, 642, 752, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 141, 302
HpyF3I CTNAG 2 cut(s) 227, 1190
HpySE526I ACGT 6 cut(s) 68, 128, 140, 642, 752, 940
Hsp92II CATG 5 cut(s) 63, 67, 749, 1119, 1248
KpnI GGTACC 1 cut(s) 1307
Kzo9I GATC 5 cut(s) 199, 325, 371, 437, 757
LmnI GCTCC 1 cut(s) 1325
Lsp1109I GCAGC 4 cut(s) 451, 688, 968, 989
LweI GCATC 7 cut(s) 283, 467, 846, 932, 989, 1079, 1258
MaeI CTAG 3 cut(s) 1016, 1253, 1262
MaeII ACGT 6 cut(s) 68, 128, 140, 642, 752, 940
MaeIII GTNAC 1 cut(s) 334
MalI GATC 5 cut(s) 201, 327, 373, 439, 759
MboI GATC 5 cut(s) 199, 325, 371, 437, 757
MboII GAAGA 7 cut(s) 336, 372, 506, 517, 536, 979, 1088
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 3 cut(s) 74, 400, 542
MluCI AATT 8 cut(s) 195, 207, 241, 566, 730, 766, 1092, 1351
MlyI GAGTC 1 cut(s) 670
MmeI TCCRAC 1 cut(s) 1265
Mph1103I ATGCAT 2 cut(s) 65, 850
MseI TTAA 3 cut(s) 276, 683, 1032
MslI CAYNNNNRTG 1 cut(s) 606
MspI CCGG 2 cut(s) 932, 1307
MspR9I CCNGG 1 cut(s) 587
Mva1269I GAATGC 3 cut(s) 601, 850, 892
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 3 cut(s) 69, 141, 302
NdeI CATATG 1 cut(s) 607
NdeII GATC 5 cut(s) 199, 325, 371, 437, 757
NlaIII CATG 5 cut(s) 63, 67, 749, 1119, 1248
NlaIV GGNNCC 4 cut(s) 1277, 1305, 1321, 1368
NmeAIII GCCGAG 1 cut(s) 1304
NsiI ATGCAT 2 cut(s) 65, 850
NspI RCATGY 3 cut(s) 63, 749, 1119
PaeI GCATGC 2 cut(s) 63, 749
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PctI GAATGC 3 cut(s) 601, 850, 892
PfeI GAWTC 2 cut(s) 515, 815
PinAI ACCGGT 1 cut(s) 931
PkrI GCNGC 5 cut(s) 7, 466, 703, 958, 979
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
PshAI GACNNNNGTC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 4 cut(s) 1277, 1305, 1321, 1368
PspPI GGNCC 2 cut(s) 929, 1345
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 1 cut(s) 757
RsaI GTAC 2 cut(s) 1169, 1305
RsaNI GTAC 2 cut(s) 1168, 1304
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 1 cut(s) 542
SaqAI TTAA 3 cut(s) 276, 683, 1032
SatI GCNGC 5 cut(s) 6, 465, 702, 957, 978
Sau3AI GATC 5 cut(s) 199, 325, 371, 437, 757
Sau96I GGNCC 2 cut(s) 929, 1345
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 3 cut(s) 74, 400, 542
SfaNI GCATC 7 cut(s) 283, 467, 846, 932, 989, 1079, 1258
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 2 cut(s) 929, 1345
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
SphI GCATGC 2 cut(s) 63, 749
Sse9I AATT 8 cut(s) 195, 207, 241, 566, 730, 766, 1092, 1351
SsiI CCGC 1 cut(s) 5
SspMI CTAG 3 cut(s) 1016, 1253, 1262
SstI GAGCTC 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 585
StyI CCWWGG 1 cut(s) 1062
TaaI ACNGT 3 cut(s) 689, 1218, 1315
TaiI ACGT 6 cut(s) 71, 131, 143, 645, 755, 943
TaqI TCGA 2 cut(s) 219, 722
TasI AATT 8 cut(s) 195, 207, 241, 566, 730, 766, 1092, 1351
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 515, 815
Tru1I TTAA 3 cut(s) 276, 683, 1032
Tru9I TTAA 3 cut(s) 276, 683, 1032
TscAI CASTG 6 cut(s) 360, 400, 417, 540, 1201, 1239
TseI GCWGC 4 cut(s) 464, 701, 956, 977
TspDTI ATGAA 6 cut(s) 372, 594, 647, 795, 1086, 1193
TspRI CASTG 6 cut(s) 360, 400, 417, 540, 1201, 1239
VpaK11BI GGWCC 2 cut(s) 929, 1345
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 4 cut(s) 207, 566, 730, 1092
XbaI TCTAGA 1 cut(s) 1252
XceI RCATGY 3 cut(s) 63, 749, 1119
XspI CTAG 3 cut(s) 1016, 1253, 1262
Zsp2I ATGCAT 2 cut(s) 65, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.