Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Forward (+)

23230688 .. 23231413

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACTGGAACTGACGTCTCCACCGCCAAGGCCAAGAAGGCGAGATCGCCGCCCGCTCACCCGCCGTTCGTCGAGATGATCACGGCGGCGATTGTGTCGTTGAAGGATAGGACCGGATCGAGCCAGTATGCGATCACCAAGTTCGTGGAGGAGAAGCACAAGAATCTGCCGCCGACCTTCAAGAAGCTTCTGCTCAACCATTTGAAGAAGCTCGTGGCTGCCGGAAAGCTCGTCAAGGTGAAGAACTCGTTCAAGCTGCCTCCCGTTCGCTCCGCTGCTCCGGCGAAAGAGAAGGCAGCGGCCGCGGCGCCCAAGCCTAAGAAGTCGGCCGCGGTGGTCGCTAAGCCGAAGTCCAAAACGGCTGCGAAGCCCAAGGCGAAAGCGGTAGCTTCTAAGCCCAAGCCGGCGGCTGCGAAGCCAAAGGTGAAGGCGATTGCTGCCTTGGCCAAACCTGCTTCCAAGGCGGCGAGAACATCGACAAGGACGTCGCCGGGGAAGAAGGCGGAGGTGAAGTCTAAGGCGAAGGCGAAGAAGCCGGTGGCTCCGGCGAGGGCTGTGAGGAAGCCGAAGAGTGTGAAGTCGCCGGTGAAGAGGAAGGCTCCGGCGAGGAAGGCGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

208

Amino Acids

21.71

Weight (kDa)

11.41

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	20 - 86	7.9e-19	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
AatII	GACGTC	2 cut(s)	18, 488
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	56
AccII	CGCG	2 cut(s)	305, 332
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	3 cut(s)	300, 327, 444
AcyI	GRCGYC	3 cut(s)	15, 308, 485
AgsI	TTSAA	4 cut(s)	103, 181, 205, 253
AluBI	AGCT	5 cut(s)	187, 211, 229, 256, 389
AluI	AGCT	5 cut(s)	187, 211, 229, 256, 389
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	4 cut(s)	30, 300, 327, 444
ApeKI	GCWGC	7 cut(s)	218, 256, 275, 296, 362, 410, 437
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	6 cut(s)	50, 127, 250, 436, 520, 598
AvaII	GGWCC	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	212
BbvI	GCAGC	7 cut(s)	205, 243, 262, 308, 349, 397, 424
BceAI	ACGGC	3 cut(s)	49, 99, 375
BclI	TGATCA	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	460
BglI	GCCNNNNNGGC	1 cut(s)	38
BlpI	GCTNAGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	3 cut(s)	309, 543, 600
BmrFI	CCNGG	1 cut(s)	492
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	492
BsaHI	GRCGYC	3 cut(s)	15, 308, 485
BsaJI	CCNNGG	7 cut(s)	27, 303, 330, 372, 441, 459, 491
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bse118I	RCCGGY	3 cut(s)	403, 535, 583
Bse1I	ACTGG	2 cut(s)	10, 124
BseDI	CCNNGG	7 cut(s)	27, 303, 330, 372, 441, 459, 491
BseNI	ACTGG	2 cut(s)	10, 124
BseRI	GAGGAG	1 cut(s)	164
BseX3I	CGGCCG	2 cut(s)	300, 327
BseXI	GCAGC	7 cut(s)	205, 243, 262, 308, 349, 397, 424
Bsh1236I	CGCG	2 cut(s)	305, 332
Bsh1285I	CGRYCG	2 cut(s)	303, 330
BshFI	GGCC	4 cut(s)	32, 302, 329, 446
BshNI	GGYRCC	1 cut(s)	307
BsiEI	CGRYCG	2 cut(s)	303, 330
BsiSI	CCGG	9 cut(s)	114, 222, 281, 404, 491, 536, 545, 584, 602
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	4 cut(s)	32, 302, 329, 446
Bsp143I	GATC	4 cut(s)	44, 78, 116, 132
Bsp1720I	GCTNAGC	1 cut(s)	342
BspANI	GGCC	4 cut(s)	32, 302, 329, 446
BspFNI	CGCG	2 cut(s)	305, 332
BspLI	GGNNCC	3 cut(s)	309, 543, 600
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	56
BsrFI	RCCGGY	3 cut(s)	403, 535, 583
BsrI	ACTGG	2 cut(s)	10, 124
BssAI	RCCGGY	3 cut(s)	403, 535, 583
BssECI	CCNNGG	7 cut(s)	27, 303, 330, 372, 441, 459, 491
BssMI	GATC	4 cut(s)	44, 78, 116, 132
BssNI	GRCGYC	3 cut(s)	15, 308, 485
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	4 cut(s)	27, 372, 441, 459
Bst2BI	CACGAG	1 cut(s)	212
Bst6I	CTCTTC	2 cut(s)	563, 584
BstACI	GRCGYC	3 cut(s)	15, 308, 485
BstC8I	GCNNGC	2 cut(s)	54, 405
BstDEI	CTNAG	4 cut(s)	318, 342, 393, 516
BstDSI	CCRYGG	2 cut(s)	303, 330
BstFNI	CGCG	2 cut(s)	305, 332
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	4 cut(s)	47, 81, 119, 135
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	44, 78, 116, 132
BstMCI	CGRYCG	2 cut(s)	303, 330
BstSCI	CCNGG	1 cut(s)	490
BstUI	CGCG	2 cut(s)	305, 332
BstV1I	GCAGC	7 cut(s)	205, 243, 262, 308, 349, 397, 424
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstZI	CGGCCG	2 cut(s)	300, 327
BsuRI	GGCC	4 cut(s)	32, 302, 329, 446
BtgI	CCRYGG	2 cut(s)	303, 330
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	54, 405
CciNI	GCGGCCGC	1 cut(s)	300
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	3 cut(s)	403, 535, 583
Cfr13I	GGNCC	1 cut(s)	111
Cfr42I	CCGCGG	2 cut(s)	306, 333
DdeI	CTNAG	4 cut(s)	318, 342, 393, 516
DinI	GGCGCC	1 cut(s)	309
DpnI	GATC	4 cut(s)	46, 80, 118, 134
DpnII	GATC	4 cut(s)	44, 78, 116, 132
DrdI	GACNNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	3 cut(s)	300, 327, 444
EagI	CGGCCG	2 cut(s)	300, 327
Eam1104I	CTCTTC	2 cut(s)	563, 584
EarI	CTCTTC	2 cut(s)	563, 584
EciI	GGCGGA	1 cut(s)	518
EclXI	CGGCCG	2 cut(s)	300, 327
Eco130I	CCWWGG	4 cut(s)	27, 372, 441, 459
Eco47I	GGWCC	1 cut(s)	111
Eco52I	CGGCCG	2 cut(s)	300, 327
EcoT14I	CCWWGG	4 cut(s)	27, 372, 441, 459
EgeI	GGCGCC	1 cut(s)	309
EheI	GGCGCC	1 cut(s)	309
ErhI	CCWWGG	4 cut(s)	27, 372, 441, 459
Esp3I	CGTCTC	1 cut(s)	22
FaiI	YATR	1 cut(s)	129
FauI	CCCGC	2 cut(s)	61, 69
FbaI	TGATCA	1 cut(s)	78
GlaI	GCGC	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	4 cut(s)	32, 302, 329, 446
HapII	CCGG	9 cut(s)	114, 222, 281, 404, 491, 536, 545, 584, 602
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	3 cut(s)	15, 308, 485
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	9 cut(s)	114, 222, 281, 404, 491, 536, 545, 584, 602
HphI	GGTGA	6 cut(s)	50, 127, 250, 436, 520, 598
Hpy188III	TCNNGA	2 cut(s)	73, 181
Hpy99I	CGWCG	2 cut(s)	74, 490
HpyAV	CCTTC	9 cut(s)	31, 97, 187, 286, 421, 493, 517, 589, 604
HpyCH4IV	ACGT	2 cut(s)	15, 485
HpyF3I	CTNAG	4 cut(s)	318, 342, 393, 516
HpySE526I	ACGT	2 cut(s)	15, 485
Hsp92I	GRCGYC	3 cut(s)	15, 308, 485
HspAI	GCGC	1 cut(s)	308
KasI	GGCGCC	1 cut(s)	307
KroI	GCCGGC	1 cut(s)	403
KroNI	GCCGGC	1 cut(s)	405
Ksp22I	TGATCA	1 cut(s)	78
KspI	CCGCGG	2 cut(s)	306, 333
Kzo9I	GATC	4 cut(s)	44, 78, 116, 132
LmnI	GCTCC	4 cut(s)	275, 283, 547, 604
Lsp1109I	GCAGC	7 cut(s)	205, 243, 262, 308, 349, 397, 424
MaeII	ACGT	2 cut(s)	15, 485
MalI	GATC	4 cut(s)	46, 80, 118, 134
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	4 cut(s)	44, 78, 116, 132
MboII	GAAGA	6 cut(s)	217, 253, 508, 541, 580, 601
MlsI	TGGCCA	1 cut(s)	446
MluNI	TGGCCA	1 cut(s)	446
Mly113I	GGCGCC	1 cut(s)	308
MnlI	CCTC	7 cut(s)	142, 270, 499, 543, 552, 585, 600
Mox20I	TGGCCA	1 cut(s)	446
MroNI	GCCGGC	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	4 cut(s)	275, 299, 305, 332
MspI	CCGG	9 cut(s)	114, 222, 281, 404, 491, 536, 545, 584, 602
MspR9I	CCNGG	1 cut(s)	492
MvnI	CGCG	2 cut(s)	305, 332
NaeI	GCCGGC	1 cut(s)	405
NarI	GGCGCC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	492
NdeII	GATC	4 cut(s)	44, 78, 116, 132
NgoMIV	GCCGGC	1 cut(s)	403
NlaIV	GGNNCC	3 cut(s)	309, 543, 600
NotI	GCGGCCGC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PdiI	GCCGGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	163
PluTI	GGCGCC	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	309, 543, 600
PspPI	GGNCC	1 cut(s)	111
SacII	CCGCGG	2 cut(s)	306, 333
Sau3AI	GATC	4 cut(s)	44, 78, 116, 132
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	492
SfoI	GGCGCC	1 cut(s)	309
Sfr303I	CCGCGG	2 cut(s)	306, 333
SgrAI	CRCCGGYG	1 cut(s)	583
SgrBI	CCGCGG	2 cut(s)	306, 333
SinI	GGWCC	1 cut(s)	111
SspDI	GGCGCC	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	4 cut(s)	27, 372, 441, 459
TaiI	ACGT	2 cut(s)	18, 488
TaqI	TCGA	3 cut(s)	72, 119, 476
TauI	GCSGC	9 cut(s)	52, 89, 172, 302, 305, 308, 332, 410, 467
TfiI	GAWTC	1 cut(s)	163
TseI	GCWGC	7 cut(s)	218, 256, 275, 296, 362, 410, 437
VpaK11BI	GGWCC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	248
ZraI	GACGTC	2 cut(s)	16, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.