pycom13g05250

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0003407
Physical Location & Seq
Reverse (-)
3493042 .. 3494157
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
ATGCAAAGCAGAAATAACTTAAACACCATGGCCCCCATGCCACATCTAGAAATTTGTTCAGCTTCAGTACTCCACTTTATATATAAGAATTACAGGCATCTCAAAGTCTATCGAGTTTCATATCAGGAAATGGGGAAAATAGGCACTAAATTGCCTAATTTCTGTCTAAACAGGATTAGGCCACACGTTAGGGTTCGGTCGCCAACGATACAGTCCAAGCCAGATGTTTCAGATGTCGCTAAAAAAAGTAGTGATGGAAAATTTGAGGATTCTAGGAATGTTGGAGAAGAATCGAAAGTGAAAGCAGCTGGTGGTGGTGGTGGTGATGAAAACCCTAAAAAAGCTGCGTTGGTAATTGCTAGGAAAATCATGATTGTGGTTGATTCCAGCCTTGAAGCCAAAGGAGCTATCCAATGGGCTCTCTCTCACACTGTGCAGAGCCAGGATAAAATTGTGCTGCTTCATGTCACCAAATCTGCAAACTCAAAAAAAGGTGAGGAGACCAGCAAGGAGATAGCTCCATCTCCAAGAGCTTATGCACTTGTCCACTCTTTGAGGAACATGTGTCAGTTGAAGAGGCCAGAGGTAGAAATTGAGGTTGCAGTGGTGGTGGAAGGGAATAAGGAGAAGGGTCCAAAAATACTGGAAGAGGCAAAGAAACAAGAAGTGGGATTGCTTGTACTGGGGCAGAAAAAGAGGTCTACTACATGGCGTCTTCTGGTGATGTGGACCGGCAACCGGGTCAGCGGCGGCCGCGGCGGTGTGGTGGAGTACTGTATACAAAATGCCAGTTGCATGGCAGTTGCTGTGAGAAGGAAAAGCAGGAAGGTTGGAGGGTATTTGATTACTACAAAGCGCCAGAAAGATTTCTGGCTATTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

295

Amino Acids

32.67

Weight (kDa)

9.97

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 121 - 271 9.5e-17 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 701, 778
AccII CGCG 1 cut(s) 756
AciI CCGC 5 cut(s) 747, 750, 754, 756, 759
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 2 cut(s) 51, 260
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 712
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 3 cut(s) 69, 681, 773
AfiI CCNNNNNNNGG 1 cut(s) 738
AflIII ACRYGT 2 cut(s) 184, 561
AgsI TTSAA 2 cut(s) 395, 574
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 6 cut(s) 62, 308, 344, 407, 518, 533
AluI AGCT 6 cut(s) 62, 308, 344, 407, 518, 533
Alw26I GTCTC 1 cut(s) 494
AlwNI CAGNNNCTG 1 cut(s) 806
AoxI GGCC 5 cut(s) 30, 179, 578, 751, 879
ApeKI GCWGC 3 cut(s) 305, 344, 457
ApoI RAATTY 2 cut(s) 51, 260
Asp700I GAANNNNTTC 1 cut(s) 866
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 3 cut(s) 31, 632, 729
AsuC2I CCSGG 1 cut(s) 740
AsuHPI GGTGA 4 cut(s) 335, 460, 506, 733
AvaII GGWCC 2 cut(s) 632, 729
BanII GRGCYC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 707
BbvI GCAGC 3 cut(s) 317, 331, 444
BccI CCATC 2 cut(s) 248, 529
BciT130I CCWGG 1 cut(s) 443
BcnI CCSGG 1 cut(s) 740
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 3 cut(s) 47, 273, 360
BfoI RGCGCY 1 cut(s) 859
BisI GCNGC 7 cut(s) 306, 345, 458, 748, 751, 754, 757
BlsI GCNGC 7 cut(s) 307, 346, 459, 749, 752, 755, 758
BmcAI AGTACT 2 cut(s) 69, 773
Bme1390I CCNGG 2 cut(s) 443, 740
Bme18I GGWCC 2 cut(s) 632, 729
BmgT120I GGNCC 3 cut(s) 31, 632, 729
BmiI GGNNCC 2 cut(s) 33, 633
BmrFI CCNGG 2 cut(s) 443, 740
BmrI ACTGGG 1 cut(s) 692
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 707
BpuMI CCSGG 1 cut(s) 740
BsaHI GRCGYC 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 27, 754
Bsc4I CCNNNNNNNGG 1 cut(s) 738
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 3 cut(s) 648, 687, 789
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 27, 754
BseLI CCNNNNNNNGG 1 cut(s) 738
BseNI ACTGG 3 cut(s) 648, 687, 789
BseRI GAGGAG 1 cut(s) 512
BseX3I CGGCCG 1 cut(s) 751
BseXI GCAGC 3 cut(s) 317, 331, 444
BsgI GTGCAG 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 756
Bsh1285I CGRYCG 2 cut(s) 200, 754
BshFI GGCC 5 cut(s) 32, 181, 580, 753, 881
BsiEI CGRYCG 2 cut(s) 200, 754
BsiSI CCGG 2 cut(s) 732, 739
BslI CCNNNNNNNGG 1 cut(s) 738
BsmAI GTCTC 1 cut(s) 494
BsnI GGCC 5 cut(s) 32, 181, 580, 753, 881
Bso31I GGTCTC 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 421
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 5 cut(s) 747, 750, 754, 756, 759
BspANI GGCC 5 cut(s) 32, 181, 580, 753, 881
BspFNI CGCG 1 cut(s) 756
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 33, 633
BspTNI GGTCTC 1 cut(s) 494
BsrFI RCCGGY 1 cut(s) 731
BsrI ACTGG 3 cut(s) 648, 687, 789
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 2 cut(s) 27, 754
BssNAI GTATAC 1 cut(s) 779
BssNI GRCGYC 1 cut(s) 712
BssT1I CCWWGG 1 cut(s) 27
Bst1107I GTATAC 1 cut(s) 779
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 3 cut(s) 213, 433, 776
Bst6I CTCTTC 2 cut(s) 569, 642
BstACI GRCGYC 1 cut(s) 712
BstDSI CCRYGG 2 cut(s) 27, 754
BstFNI CGCG 1 cut(s) 756
BstH2I RGCGCY 1 cut(s) 859
BstHHI GCGC 1 cut(s) 858
BstMAI GTCTC 1 cut(s) 494
BstMCI CGRYCG 2 cut(s) 200, 754
BstMWI GCNNNNNNNGC 3 cut(s) 404, 753, 756
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 2 cut(s) 441, 738
BstUI CGCG 1 cut(s) 756
BstV1I GCAGC 3 cut(s) 317, 331, 444
BstV2I GAAGAC 1 cut(s) 707
BstXI CCANNNNNNTGG 1 cut(s) 796
BstZ17I GTATAC 1 cut(s) 779
BstZI CGGCCG 1 cut(s) 751
BsuRI GGCC 5 cut(s) 32, 181, 580, 753, 881
BtgI CCRYGG 2 cut(s) 27, 754
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 429, 609
CaiI CAGNNNCTG 1 cut(s) 806
CciI TCATGA 1 cut(s) 369
CciNI GCGGCCGC 1 cut(s) 751
CfoI GCGC 1 cut(s) 858
Cfr10I RCCGGY 1 cut(s) 731
Cfr13I GGNCC 3 cut(s) 31, 632, 729
Cfr42I CCGCGG 1 cut(s) 757
CseI GACGC 1 cut(s) 701
Csp6I GTAC 3 cut(s) 68, 680, 772
CviAII CATG 7 cut(s) 28, 37, 370, 464, 562, 708, 796
CviQI GTAC 3 cut(s) 68, 680, 772
DraIII CACNNNGTG 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 751
EagI CGGCCG 1 cut(s) 751
Eam1104I CTCTTC 2 cut(s) 569, 642
EarI CTCTTC 2 cut(s) 569, 642
EclXI CGGCCG 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 494
Eco47I GGWCC 2 cut(s) 632, 729
Eco52I CGGCCG 1 cut(s) 751
Eco57I CTGAAG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 7 cut(s) 31, 40, 373, 467, 565, 711, 799
FatI CATG 7 cut(s) 27, 36, 369, 463, 561, 707, 795
FblI GTMKAC 2 cut(s) 701, 778
Fnu4HI GCNGC 7 cut(s) 306, 345, 458, 748, 751, 754, 757
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 7 cut(s) 306, 345, 458, 748, 751, 754, 757
FspBI CTAG 3 cut(s) 47, 273, 360
GlaI GCGC 1 cut(s) 857
GluI GCNGC 7 cut(s) 306, 345, 458, 748, 751, 754, 757
HaeII RGCGCY 1 cut(s) 859
HaeIII GGCC 5 cut(s) 32, 181, 580, 753, 881
HapII CCGG 2 cut(s) 732, 739
HgaI GACGC 1 cut(s) 701
HhaI GCGC 1 cut(s) 858
Hin1I GRCGYC 1 cut(s) 712
Hin1II CATG 7 cut(s) 31, 40, 373, 467, 565, 711, 799
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HinfI GANTC 3 cut(s) 269, 290, 383
HpaII CCGG 2 cut(s) 732, 739
HphI GGTGA 4 cut(s) 335, 460, 506, 733
Hpy166II GTNNAC 4 cut(s) 547, 702, 729, 779
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 47, 125, 370
Hpy8I GTNNAC 4 cut(s) 547, 702, 729, 779
HpyAV CCTTC 4 cut(s) 608, 622, 807, 820
HpyCH4III ACNGT 3 cut(s) 213, 433, 776
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 6 cut(s) 4, 436, 479, 539, 602, 795
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 753, 756
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 712
Hsp92II CATG 7 cut(s) 31, 40, 373, 467, 565, 711, 799
HspAI GCGC 1 cut(s) 856
KspI CCGCGG 1 cut(s) 757
LmnI GCTCC 2 cut(s) 404, 523
Lsp1109I GCAGC 3 cut(s) 317, 331, 444
LweI GCATC 1 cut(s) 106
MaeI CTAG 3 cut(s) 47, 273, 360
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 466
MboII GAAGA 4 cut(s) 299, 586, 659, 707
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 8 cut(s) 51, 88, 149, 157, 260, 354, 450, 591
MmeI TCCRAC 2 cut(s) 262, 811
MnlI CCTC 9 cut(s) 259, 490, 549, 570, 577, 589, 643, 690, 827
MroXI GAANNNNTTC 1 cut(s) 866
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 3 cut(s) 308, 747, 756
MspI CCGG 2 cut(s) 732, 739
MspR9I CCNGG 2 cut(s) 443, 740
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 756
MwoI GCNNNNNNNGC 3 cut(s) 404, 753, 756
NciI CCSGG 1 cut(s) 740
NcoI CCATGG 1 cut(s) 27
NlaIII CATG 7 cut(s) 31, 40, 373, 467, 565, 711, 799
NlaIV GGNNCC 2 cut(s) 33, 633
NmuCI GTSAC 1 cut(s) 466
NotI GCGGCCGC 1 cut(s) 751
NspI RCATGY 1 cut(s) 565
PagI TCATGA 1 cut(s) 369
PciI ACATGT 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 866
PfeI GAWTC 3 cut(s) 269, 290, 383
PkrI GCNGC 7 cut(s) 307, 346, 459, 749, 752, 755, 758
PscI ACATGT 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 33, 633
PspPI GGNCC 3 cut(s) 31, 632, 729
PstNI CAGNNNCTG 1 cut(s) 806
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 3 cut(s) 69, 681, 773
RsaNI GTAC 3 cut(s) 68, 680, 772
RseI CAYNNNNRTG 1 cut(s) 374
SacII CCGCGG 1 cut(s) 757
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 7 cut(s) 306, 345, 458, 748, 751, 754, 757
Sau96I GGNCC 3 cut(s) 31, 632, 729
ScaI AGTACT 2 cut(s) 69, 773
ScrFI CCNGG 2 cut(s) 443, 740
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 1 cut(s) 106
Sfr303I CCGCGG 1 cut(s) 757
SgrBI CCGCGG 1 cut(s) 757
SinI GGWCC 2 cut(s) 632, 729
SmiMI CAYNNNNRTG 1 cut(s) 374
Sse9I AATT 8 cut(s) 51, 88, 149, 157, 260, 354, 450, 591
SsiI CCGC 5 cut(s) 747, 750, 754, 756, 759
SspMI CTAG 3 cut(s) 47, 273, 360
StyD4I CCNGG 2 cut(s) 441, 738
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 3 cut(s) 213, 433, 776
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 112, 293
TaqII GACCGA 1 cut(s) 186
TasI AATT 8 cut(s) 51, 88, 149, 157, 260, 354, 450, 591
TatI WGTACW 3 cut(s) 67, 679, 771
TauI GCSGC 4 cut(s) 750, 753, 756, 759
TfiI GAWTC 3 cut(s) 269, 290, 383
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 2 cut(s) 436, 609
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 3 cut(s) 305, 344, 457
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 3 cut(s) 108, 342, 452
TspRI CASTG 2 cut(s) 436, 609
VpaK11BI GGWCC 2 cut(s) 632, 729
XapI RAATTY 2 cut(s) 51, 260
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 565
XmiI GTMKAC 2 cut(s) 701, 778
XmnI GAANNNNTTC 1 cut(s) 866
XspI CTAG 3 cut(s) 47, 273, 360
ZrmI AGTACT 2 cut(s) 69, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.