pycom13g12290

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
8518830 .. 8520517
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12290.2

Sequence Viewer

Length: 1005 bp
ATGCTGGAAGATGTGATCGAGGTGTCCGAGACTGATGATGATATCCAATCTGGACCTGAAAAAGTGGAAGCTAAGAACCAAGCCTTGGACTTTATACATGAATTGGGTTGGCTCCTACATAGAAGTCGCGTTAAGTTTAGACTGGGTCAATTCGATCCCAATCTAGATACATTTCCCTCTGGACGGTTCAGATTGCTCATGGAGTTCTCCATTGACCATGATTGGTGTGCTGTGGTGAAGAAACTCTTGGGCATTCTGTTTGATGGTACTGTCGACGCTGGAGAGCATCCTTCCCTTGAGTCTGCACTACTGGATATGGGCCTCCTCCACAGAGCTGTGCGAATCAATAGCAGACGTATGGTGGAATTCTTGTTAAGATTTGTCCCAGGTTTAACAGGATCTGAGCAGAAGGAACAAGTTGACAGGGATGGCAACAGTTTCTTGTTTAAACCTGATGTTGTTGGGCCCATGGGGTTGACTCCTCTTCATATTGCCGCCAATACTGATGGCTGTGAGCAAGTATTGGATGCCTTAACGGATGATCCTGGAAAGGTGGGAATTAAAGCATGGAAAAACGCTCGAGACAGCACAGGATTGACACCATACGATTATGCATGCCTTCGAAGCCGCTACTCCTATATCCATATAGTCCAGCGGAAAATCAGCAATACACTGGAAAGGGGGCATGTGGTGCTTGACATCCCTGGCCTCACGTTAGACAGAAATGGAAAGCAGAAGCAATCGGATGCGCATAAATCATCAAGAGTAGCCAGCTTGGAAACTGAAAAGAATGAAATAAAAGCAATCTTACGACACTGCAGGTTATGTGAACAGAAACCAGCTTATAGCACCACACGGTCACTTGTATACAGGCCGGCAATGCTGTCAATGGTGGCTGTCGCTGCTGTCTGCGTTTGCGTGGCCTTGCTCTTTAAAAGCAATCCGGAAGTTGTTTTCGTGTTGGAGCCATTCCGGTGGGAACACTTGAAGTTTGGTTCAAGCTAA

Protein Analysis

335

Amino Acids

37.56

Weight (kDa)

6.42

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 750
Acc36I ACCTGC 1 cut(s) 810
AccB7I CCANNNNNTGG 1 cut(s) 85
AccI GTMKAC 2 cut(s) 273, 867
AccII CGCG 1 cut(s) 129
AccIII TCCGGA 1 cut(s) 943
AciI CCGC 3 cut(s) 495, 628, 655
AclWI GGATC 3 cut(s) 149, 406, 536
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 85, 183
AgsI TTSAA 2 cut(s) 988, 999
AjnI CCWGG 3 cut(s) 385, 544, 703
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 230, 262
AluBI AGCT 5 cut(s) 71, 335, 774, 842, 1002
AluI AGCT 5 cut(s) 71, 335, 774, 842, 1002
Alw26I GTCTC 2 cut(s) 23, 576
AlwI GGATC 3 cut(s) 149, 406, 536
AlwNI CAGNNNCTG 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 579
Aor13HI TCCGGA 1 cut(s) 943
AoxI GGCC 5 cut(s) 319, 464, 706, 872, 921
ApaI GGGCCC 1 cut(s) 468
ApeKI GCWGC 1 cut(s) 902
ApoI RAATTY 1 cut(s) 365
AspLEI GCGC 1 cut(s) 751
AspS9I GGNCC 4 cut(s) 53, 319, 464, 465
AsuHPI GGTGA 1 cut(s) 247
AsuII TTCGAA 1 cut(s) 622
AvaI CYCGRG 1 cut(s) 579
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 889
BccI CCATC 3 cut(s) 257, 422, 500
BciT130I CCWGG 3 cut(s) 387, 546, 705
BcoDI GTCTC 2 cut(s) 23, 576
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 817
BfuAI ACCTGC 1 cut(s) 810
BisI GCNGC 3 cut(s) 495, 628, 903
BlsI GCNGC 3 cut(s) 496, 629, 904
Bme1390I CCNGG 3 cut(s) 387, 546, 705
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 579
BmgT120I GGNCC 4 cut(s) 53, 319, 464, 465
BmiI GGNNCC 3 cut(s) 113, 466, 966
BmrFI CCNGG 3 cut(s) 387, 546, 705
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 3 cut(s) 295, 517, 736
BmuI ACTGGG 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 622
BpuEI CTTGAG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 4 cut(s) 84, 385, 468, 703
BsaWI WCCGGW 2 cut(s) 943, 972
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 183
Bse118I RCCGGY 1 cut(s) 874
Bse1I ACTGG 3 cut(s) 147, 315, 678
Bse3DI GCAATG 1 cut(s) 885
Bse8I GATNNNNATC 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 943
BseBI CCWGG 3 cut(s) 387, 546, 705
BseDI CCNNGG 4 cut(s) 84, 385, 468, 703
BseGI GGATG 6 cut(s) 286, 433, 532, 544, 699, 751
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 85, 183
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 3 cut(s) 147, 315, 678
BseRI GAGGAG 2 cut(s) 314, 471
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 1 cut(s) 889
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 5 cut(s) 321, 466, 708, 874, 923
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 3 cut(s) 875, 944, 973
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 85, 183
BsmAI GTCTC 2 cut(s) 23, 576
BsmFI GGGAC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 5 cut(s) 321, 466, 708, 874, 923
BsoBI CYCGRG 1 cut(s) 579
Bsp119I TTCGAA 1 cut(s) 622
Bsp120I GGGCCC 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 468
Bsp13I TCCGGA 1 cut(s) 943
Bsp143I GATC 4 cut(s) 15, 154, 398, 541
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 3 cut(s) 495, 628, 655
BspANI GGCC 5 cut(s) 321, 466, 708, 874, 923
BspCNI CTCAG 1 cut(s) 394
BspEI TCCGGA 1 cut(s) 943
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 113, 466, 966
BspMAI CTGCAG 1 cut(s) 821
BspMI ACCTGC 1 cut(s) 810
BspPI GGATC 3 cut(s) 149, 406, 536
BspT104I TTCGAA 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 885
BsrFI RCCGGY 1 cut(s) 874
BsrI ACTGG 3 cut(s) 147, 315, 678
BssAI RCCGGY 1 cut(s) 874
BssECI CCNNGG 4 cut(s) 84, 385, 468, 703
BssMI GATC 4 cut(s) 15, 154, 398, 541
BssNAI GTATAC 1 cut(s) 868
BssT1I CCWWGG 2 cut(s) 84, 468
Bst1107I GTATAC 1 cut(s) 868
Bst2UI CCWGG 3 cut(s) 387, 546, 705
Bst4CI ACNGT 4 cut(s) 186, 271, 437, 858
Bst6I CTCTTC 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 691
BstBI TTCGAA 1 cut(s) 622
BstC8I GCNNGC 3 cut(s) 616, 772, 876
BstDEI CTNAG 2 cut(s) 72, 402
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 6 cut(s) 286, 433, 532, 544, 699, 751
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 4 cut(s) 18, 157, 401, 544
BstMAI GTCTC 2 cut(s) 23, 576
BstMBI GATC 4 cut(s) 15, 154, 398, 541
BstMWI GCNNNNNNNGC 4 cut(s) 624, 691, 880, 902
BstNI CCWGG 3 cut(s) 387, 546, 705
BstNSI RCATGY 2 cut(s) 618, 689
BstSCI CCNGG 3 cut(s) 385, 544, 703
BstSFI CTRYAG 1 cut(s) 817
BstSLI GKGCMC 1 cut(s) 468
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 889
BstX2I RGATCY 1 cut(s) 398
BstXI CCANNNNNNTGG 1 cut(s) 975
BstYI RGATCY 1 cut(s) 398
BstZ17I GTATAC 1 cut(s) 868
BsuRI GGCC 5 cut(s) 321, 466, 708, 874, 923
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 6 cut(s) 286, 433, 532, 544, 699, 751
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 2 cut(s) 671, 814
BveI ACCTGC 1 cut(s) 810
Cac8I GCNNGC 3 cut(s) 616, 772, 876
CaiI CAGNNNCTG 1 cut(s) 401
CfoI GCGC 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 874
Cfr13I GGNCC 4 cut(s) 53, 319, 464, 465
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 267
CviAII CATG 7 cut(s) 98, 199, 218, 469, 567, 615, 686
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 72, 402
DpnI GATC 4 cut(s) 17, 156, 400, 543
DpnII GATC 4 cut(s) 15, 154, 398, 541
DraI TTTAAA 2 cut(s) 448, 934
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 2 cut(s) 84, 468
Eco24I GRGCYC 1 cut(s) 468
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 3 cut(s) 385, 544, 703
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 2 cut(s) 84, 468
EcoT22I ATGCAT 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 2 cut(s) 84, 468
FaeI CATG 7 cut(s) 101, 202, 221, 472, 570, 618, 689
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 368
FatI CATG 7 cut(s) 97, 198, 217, 468, 566, 614, 685
FblI GTMKAC 2 cut(s) 273, 867
Fnu4HI GCNGC 3 cut(s) 495, 628, 903
FokI GGATG 6 cut(s) 273, 440, 539, 551, 686, 758
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 3 cut(s) 495, 628, 903
FspAI RTGCGCAY 1 cut(s) 750
FspBI CTAG 1 cut(s) 164
FspI TGCGCA 1 cut(s) 750
GlaI GCGC 1 cut(s) 750
GluI GCNGC 3 cut(s) 495, 628, 903
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 5 cut(s) 321, 466, 708, 874, 923
HapII CCGG 3 cut(s) 875, 944, 973
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 751
Hin1II CATG 7 cut(s) 101, 202, 221, 472, 570, 618, 689
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HincII GTYRAC 3 cut(s) 274, 421, 477
HindII GTYRAC 3 cut(s) 274, 421, 477
HinfI GANTC 3 cut(s) 299, 342, 478
HpaII CCGG 3 cut(s) 875, 944, 973
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 5 cut(s) 274, 421, 477, 830, 868
Hpy188I TCNGA 4 cut(s) 28, 191, 403, 745
Hpy188III TCNNGA 6 cut(s) 51, 164, 180, 581, 762, 944
Hpy8I GTNNAC 5 cut(s) 274, 421, 477, 830, 868
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 300, 403, 629
HpyCH4III ACNGT 4 cut(s) 186, 271, 437, 858
HpyCH4IV ACGT 2 cut(s) 355, 713
HpyCH4V TGCA 3 cut(s) 305, 614, 819
HpyF10VI GCNNNNNNNGC 4 cut(s) 624, 691, 880, 902
HpyF3I CTNAG 2 cut(s) 72, 402
HpySE526I ACGT 2 cut(s) 355, 713
Hsp92II CATG 7 cut(s) 101, 202, 221, 472, 570, 618, 689
HspAI GCGC 1 cut(s) 749
Kpn2I TCCGGA 1 cut(s) 943
KroI GCCGGC 1 cut(s) 874
KroNI GCCGGC 1 cut(s) 876
Kzo9I GATC 4 cut(s) 15, 154, 398, 541
LmnI GCTCC 2 cut(s) 117, 964
Lsp1109I GCAGC 1 cut(s) 889
LweI GCATC 3 cut(s) 295, 517, 736
MaeI CTAG 1 cut(s) 164
MaeII ACGT 2 cut(s) 355, 713
MaeIII GTNAC 1 cut(s) 858
MalI GATC 4 cut(s) 17, 156, 400, 543
MboI GATC 4 cut(s) 15, 154, 398, 541
MboII GAAGA 3 cut(s) 20, 250, 476
MflI RGATCY 1 cut(s) 398
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 4 cut(s) 101, 149, 365, 558
MlyI GAGTC 2 cut(s) 308, 472
MmeI TCCRAC 1 cut(s) 942
MnlI CCTC 6 cut(s) 13, 187, 332, 335, 492, 719
Mph1103I ATGCAT 1 cut(s) 616
MroI TCCGGA 1 cut(s) 943
MroNI GCCGGC 1 cut(s) 874
MseI TTAA 7 cut(s) 132, 374, 392, 447, 533, 561, 933
MslI CAYNNNNRTG 1 cut(s) 973
MspA1I CMGCKG 1 cut(s) 655
MspI CCGG 3 cut(s) 875, 944, 973
MspR9I CCNGG 3 cut(s) 387, 546, 705
MssI GTTTAAAC 1 cut(s) 448
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 3 cut(s) 387, 546, 705
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 624, 691, 880, 902
NaeI GCCGGC 1 cut(s) 876
NcoI CCATGG 1 cut(s) 468
NdeII GATC 4 cut(s) 15, 154, 398, 541
NgoMIV GCCGGC 1 cut(s) 874
NlaIII CATG 7 cut(s) 101, 202, 221, 472, 570, 618, 689
NlaIV GGNNCC 3 cut(s) 113, 466, 966
NmuCI GTSAC 1 cut(s) 858
NsbI TGCGCA 1 cut(s) 750
NsiI ATGCAT 1 cut(s) 616
NspI RCATGY 2 cut(s) 618, 689
NspV TTCGAA 1 cut(s) 622
PaeI GCATGC 1 cut(s) 618
PaeR7I CTCGAG 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 876
PfeI GAWTC 1 cut(s) 342
PflFI GACNNNGTC 1 cut(s) 144
PflMI CCANNNNNTGG 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 544
PkrI GCNGC 3 cut(s) 496, 629, 904
PleI GAGTC 2 cut(s) 307, 472
PmeI GTTTAAAC 1 cut(s) 448
PpsI GAGTC 2 cut(s) 307, 472
Psp6I CCWGG 3 cut(s) 385, 544, 703
PspGI CCWGG 3 cut(s) 385, 544, 703
PspN4I GGNNCC 3 cut(s) 113, 466, 966
PspOMI GGGCCC 1 cut(s) 464
PspPI GGNCC 4 cut(s) 53, 319, 464, 465
PstI CTGCAG 1 cut(s) 821
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 1 cut(s) 398
PsyI GACNNNGTC 1 cut(s) 144
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 973
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 7 cut(s) 132, 374, 392, 447, 533, 561, 933
SatI GCNGC 3 cut(s) 495, 628, 903
Sau3AI GATC 4 cut(s) 15, 154, 398, 541
Sau96I GGNCC 4 cut(s) 53, 319, 464, 465
SchI GAGTC 2 cut(s) 308, 472
ScrFI CCNGG 3 cut(s) 387, 546, 705
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 3 cut(s) 295, 517, 736
SfcI CTRYAG 1 cut(s) 817
Sfr274I CTCGAG 1 cut(s) 579
SfuI TTCGAA 1 cut(s) 622
SinI GGWCC 1 cut(s) 53
SlaI CTCGAG 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 973
SmlI CTYRAG 2 cut(s) 296, 579
SmoI CTYRAG 2 cut(s) 296, 579
SphI GCATGC 1 cut(s) 618
Sse9I AATT 4 cut(s) 101, 149, 365, 558
SsiI CCGC 3 cut(s) 495, 628, 655
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 3 cut(s) 385, 544, 703
StyI CCWWGG 2 cut(s) 84, 468
TaaI ACNGT 4 cut(s) 186, 271, 437, 858
TaiI ACGT 2 cut(s) 358, 716
TaqI TCGA 5 cut(s) 18, 153, 273, 580, 622
TasI AATT 4 cut(s) 101, 149, 365, 558
TauI GCSGC 2 cut(s) 497, 630
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 7 cut(s) 132, 374, 392, 447, 533, 561, 933
Tru9I TTAA 7 cut(s) 132, 374, 392, 447, 533, 561, 933
TscAI CASTG 2 cut(s) 678, 821
TseFI GTSAC 1 cut(s) 858
TseI GCWGC 1 cut(s) 902
Tsp45I GTSAC 1 cut(s) 858
TspDTI ATGAA 3 cut(s) 114, 476, 807
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 678, 821
Tth111I GACNNNGTC 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 618, 689
XhoI CTCGAG 1 cut(s) 579
XmiI GTMKAC 2 cut(s) 273, 867
XspI CTAG 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.