Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001572

Physical Location & Seq

Genomic Coordinates Reverse (-)

52620058 .. 52627358

Gene Structure 7301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3084 bp

ATGGAGGCTTTTGGAGGCAAGCCTCGGAATTTGTATGGTCCGGTGGTGCCGGATTTGAAGGCGGTTGGGAAGAAGAGTTTGGAGTGGGATTTGAATGATTGGAAATGGGACGGCCATGTTTTTACTGCCACTCCTTTGAATTCTGTGCCCTCTGATTGTAGGAGCAGGCAGTTGTTTCCGACTGGGCCGGAAACTCCATCCAATACTGGTTGGTCCAACAGTAGTTCCTCTGGTTCGGATGATATTAGTCCGGGGAATGAGAAAGGTAAAAGAGAATTGGAGAAAAGGAGAAGGGCTGCTGTTGTAGAAAATGAAGAAATAAATGATGAAGCTGGGTCTCTTAATCTCAAGCTTGGTGGGCAGGTTTACCCAATTTTGGAAGAAGATGGAAAGACCGGGAAGAAGACGAAGATTGTTGGGACTACTTCCAACCGCGCGGTTTGTCAGGTGGAGGACTGCAAGGCTGATCTTAGCCATGCCAAGGATTACCACCGACGGCATAAGGTCTGTGATATGCATTCCAAGGCAACCACAGCTATGGTGGGTAATAATTTGCAGCGGTTTTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGACGTTTGGCTGGCCATAATAGGAGGAGAAGAAAAACACATCCTGACACTGTTGTTAATGGAGGCTCCATGAATGATGAAAGAGGAAGCAGTTATATATTGATTACTTTGCTAAGAATACTCTCCAATCTGCACTCTAATAGTTCTGATCAAACAAAGGATCAGGATCTGCTTTCTCATCTGTTGAAGAACATAGCCAATAATATTGGTACTGTTGATGGAAGGAGCATATCTGCATTGCTGCAGGGATCTCAAGGTTTACTTAATGGTGGGTCTTCCGTTCAGACTGCACAGAAGGTGCCAGATATTGGTTTCAATGGCAAGGAACCCGGTAGGCCTTCTGTTTCAACCTCTAAGATGGACGATTGTATTAATCTTAATGGTCATTTAAGGCCTACAGGACAGTGTCCGACAGGACCTGCATCAGATAAGTTACTGAACAGAATATCTTCAGTTGGTGGTGATCTTGGAAGTCAGGCTCTTTCTGGTGTGCAGGCTACCAAGTCACTTTCCTCAAGAGACAGTCTTCCGTCCAAATCAGTTGCACCGGAATATGGGAGGATCCAGTTAAATGAGATCGATTTAAATAATACATATGACGATTCACAGGAGTATTTAGAGAACCTAGGGAATTCTCATGTTCCTGTAAATCCAGGGACCGAGTTTCATGGAGGTCCCTTTTGGATACAGCGTGATTCTCAAAAGTCAAGCCCGCCTCAGACAAGTGGGAATTCAGACTCAGCTGCTACTCGGTCACCATCAAGTTCTAGTGGAGAAGCTCAGAGTCGCACGGATCGGATTGTCTTCAAACTATTCGGAAAAGACCCGAGTGATCTTCCATTTGGTCTGCGATCACAGGTCCTCGGCTGGTTATCCAGCACTCCTACAGACATTGAAAGCTACATAAGGCCAGGCTGTATAATTTTGACAATTTACCTCCGTCTAGAAAAATCCACATGGGAGGAGCTTTGCTGTCATCTGGGATCCAGTTTGGCAAAACTTCTAGATGCTTCCAATGATCCTTTTTGGAGAACAGGATGGGTGTATACTAGGGTGCAACATTTTGTCGCATTTGTGTACAATGGTCAGGTTGTCTTAGACACACCCTTACCTCTTAGAAGCCACAAAACATGCAGGATCTCATGCATCAAACCAATTGCTGTCTCTTTATCTGAGAGAGCTGAATTTGTAGTGAAAGGTTTTAATCTTTCTAGTTCCACTACAAGGTTACTCTGTGCTCTAGAAGGGAAGTATTTGGCCCAAGAAGCTTGTCATGATTTGATGGAAGCTACTGATACAACTAGTGAGCATGATGGGCTACAGTGCCTCAGATTCTCTTGCTCTATCCCAGATGCTACTGGCCGAGGATTCATTGAGGTTGAAGATCACGGTCTAAGTAGCAGCTTCTTTCCATTCATAGTTGCAGAGCAGGAAGTATGTTCAGAGATTTGCATGCTGGAGGATGCAATTGAGGCTGCCAATGACATGCAGAGAGATCCTGAAATAATGGAAGCCAAGAACCAAGCCATGGACTTCATACATGAATTGGGTTGGCTCCTTCATAAAAGTCAAGTCAAGTCAAGACTTGGTCACACAGATCCCAAACTAGATCTGTTTCCTTTTCAACGGTTTAGATTACTTATGGAGTTCTCCATGGAGCATGATTGGTGTGCTGTAGTGAATAAACTCTTAGGCATTCTGTATGAAGGTACTGTTGATGCTGGAGAGCATCTTTCCATTGAGCTTGCGTTATTGGATATGGGCCTCCTCCACAGAGCTGTGCAAAGAAATTGCAAACCTATGGTGGAATTCTTGTTAAGATTTGTCCCAGATAAAGGTTTAGATAAAGCAGAGTTGGAGGAGAAGCAACAAGTTGACAGGAACAGCAACAGGTTCTTATTTAGACCTGATGTTGTCGGTCCCATGGGGTTGACTCCTCTTCATGTTGCAGCTAGTACAGATGGCTGTGAGTATGTTTTGGATGCCTTAACTAATGATCCTGGAAAGGTGGGAATTAAAGCTTGGAAAAATGCCCGAGACAGTTTAGGATTGACACCATATGATTATGCATGCCTGCGAGGCCGTTACACATATATCCATATCGTCCAGAGGAAAATCAGCAAAACAGAAAGCGGTCATGTGGTGCTTGATATCCCTGGCACGATTTTAGACAAGAACACCAAGCAGAAACAAATAGACGGGCATAAATCATCAAAAGTAGCCAGCTTCAACACTGAAAAGATTGCAATGACAGCAATACACGGAGACTGCAAGTTATGTAACCAGAAACTAGCATATGGCAGCACAAGGTCACTGGTGTACAGACCGGCAATGCTGTCAATGGTGACCGTTGCTGCTGTCTGTGTTTGTGTGGCCTTGCTATTTAAGAGCTCACCCGAAGTTGTTTTCGTGTTCCGGCCCTTCAGGTGGGAACTCTTGAAGTATGGTCCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

1027

Amino Acids

113.66

Weight (kDa)

7.15

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	148 - 221	8.1e-30	SBP domain
Ig_SPL7	PF26102	583 - 694	4.3e-45	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47070 AT2G47070 AT3G60030
fragaria_vesca	FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420
malus_domestica	MD13G1141300.v1.1 MD13G1141400.v1.1 MD16G1137600.v1.1 MD16G1137700.v1.1
prunus_persica	Prupe.1G106500_v2.0.a1 Prupe.1G106500_v2.0.a1 Prupe.1G106600_v2.0.a1
pyrus_communis	pycom13g12280 pycom13g12290 pycom16g12140 pycom16g12150 pycom16g12160
rosa_chinensis	RchiOBHm_Chr4g0427341 RchiOBHm_Chr4g0427351
rosa_laevigata	RLG00000007250 RLG00000007251
rosa_multiflora	Rmu_sc0003813.1_g000017 Rmu_sc0003813.1_g000018
rosa_roxburghii	Rroxscaffold_5G00369020 Rroxscaffold_5G00369030
rosa_rugosa	Rorug04G0216800
rosa_samantha	Rh4AG273100 Rh4AG273300 Rh4BG278800 Rh4BG278900 Rh4CG294100 Rh4CG294200 Rh4DG276200 Rh4DG276300
rosa_wichuraiana	Rw4G023700 Rw4G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	352, 570, 1054
AccB1I	GGYRCC	2 cut(s)	46, 925
AccB7I	CCANNNNNTGG	2 cut(s)	935, 2155
AccI	GTMKAC	2 cut(s)	628, 1673
AccII	CGCG	2 cut(s)	435, 437
AciI	CCGC	6 cut(s)	62, 433, 437, 559, 1340, 2760
AcoI	YGGCCR	3 cut(s)	112, 640, 1987
AcsI	RAATTY	6 cut(s)	28, 139, 1258, 1357, 1811, 2435
AcuI	CTGAAG	2 cut(s)	1062, 3034
AfaI	GTAC	5 cut(s)	838, 1706, 2338, 2584, 2948
AfiI	CCNNNNNNNGG	8 cut(s)	376, 481, 935, 1181, 1851, 2155, 2462, 3054
AhlI	ACTAGT	1 cut(s)	1928
AjnI	CCWGG	4 cut(s)	1279, 1537, 2626, 2782
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 2632, 2664
Alw21I	GWGCWC	2 cut(s)	1867, 3020
Alw26I	GTCTC	5 cut(s)	342, 1140, 1795, 2658, 2886
AlwNI	CAGNNNCTG	2 cut(s)	796, 1046
Ama87I	CYCGRG	2 cut(s)	1453, 2661
ApeKI	GCWGC	9 cut(s)	296, 556, 868, 1370, 2028, 2102, 2576, 2928, 2981
ApoI	RAATTY	6 cut(s)	28, 139, 1258, 1357, 1811, 2435
AseI	ATTAAT	1 cut(s)	999
Asp700I	GAANNNNTTC	1 cut(s)	1075
AspA2I	CCTAGG	1 cut(s)	1252
AspLEI	GCGC	1 cut(s)	437
AsuC2I	CCSGG	3 cut(s)	252, 397, 957
AsuHPI	GGTGA	4 cut(s)	1100, 1374, 2983, 3012
AvaI	CYCGRG	2 cut(s)	1453, 2661
AvaII	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2546, 3074
AvrII	CCTAGG	1 cut(s)	1252
BaeGI	GKGCMC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	642
BamHI	GGATCC	2 cut(s)	1188, 1610
BanI	GGYRCC	2 cut(s)	46, 925
BanII	GRGCYC	1 cut(s)	3020
BbsI	GAAGAC	4 cut(s)	410, 894, 1145, 1423
Bbv12I	GWGCWC	2 cut(s)	1867, 3020
BbvI	GCAGC	9 cut(s)	283, 568, 855, 1357, 2040, 2089, 2588, 2940, 2968
BccI	CCATC	9 cut(s)	205, 380, 839, 979, 1393, 1659, 1903, 1934, 2582
BceAI	ACGGC	3 cut(s)	127, 512, 2694
BciT130I	CCWGG	4 cut(s)	1281, 1539, 2628, 2784
BciVI	GTATCC	1 cut(s)	1305
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	3 cut(s)	252, 397, 957
BcoDI	GTCTC	5 cut(s)	342, 1140, 1795, 2658, 2886
BcuI	ACTAGT	1 cut(s)	1928
BfmI	CTRYAG	5 cut(s)	869, 1023, 1512, 1946, 2301
BfuAI	ACCTGC	3 cut(s)	352, 570, 1054
BfuI	GTATCC	1 cut(s)	1305
BglI	GCCNNNNNGGC	1 cut(s)	2706
BglII	AGATCT	1 cut(s)	2236
BisI	GCNGC	9 cut(s)	297, 557, 869, 1371, 2029, 2103, 2577, 2929, 2982
BlnI	CCTAGG	1 cut(s)	1252
BlsI	GCNGC	9 cut(s)	298, 558, 870, 1372, 2030, 2104, 2578, 2930, 2983
Bme1390I	CCNGG	7 cut(s)	252, 397, 957, 1281, 1539, 2628, 2784
Bme18I	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2546, 3074
BmeT110I	CYCGRG	2 cut(s)	1453, 2661
BmrFI	CCNGG	7 cut(s)	252, 397, 957, 1281, 1539, 2628, 2784
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	8 cut(s)	1058, 1624, 1782, 1969, 2080, 2335, 2365, 2599
BmuI	ACTGGG	1 cut(s)	192
BpiI	GAAGAC	4 cut(s)	410, 894, 1145, 1423
BpmI	CTGGAG	2 cut(s)	2105, 2370
BpuEI	CTTGAG	3 cut(s)	332, 864, 1126
BpuMI	CCSGG	3 cut(s)	252, 397, 957
Bsa29I	ATCGAT	1 cut(s)	1206
BsaBI	GATNNNNATC	1 cut(s)	792
BsaI	GGTCTC	1 cut(s)	342
BsaWI	WCCGGW	2 cut(s)	40, 1174
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	8 cut(s)	376, 481, 935, 1181, 1851, 2155, 2462, 3054
Bse118I	RCCGGY	1 cut(s)	2953
Bse1I	ACTGG	6 cut(s)	187, 211, 1192, 1614, 1990, 2946
Bse3DI	GCAATG	3 cut(s)	863, 2880, 2964
Bse8I	GATNNNNATC	1 cut(s)	792
BseBI	CCWGG	4 cut(s)	1281, 1539, 2628, 2784
BseCI	ATCGAT	1 cut(s)	1206
BseGI	GGATG	6 cut(s)	197, 244, 667, 1670, 2095, 2614
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	8 cut(s)	376, 481, 935, 1181, 1851, 2155, 2462, 3054
BseMI	GCAATG	3 cut(s)	863, 2880, 2964
BseMII	CTCAG	5 cut(s)	1358, 1380, 1421, 1791, 1969
BseNI	ACTGG	6 cut(s)	187, 211, 1192, 1614, 1990, 2946
BseRI	GAGGAG	5 cut(s)	667, 1604, 2384, 2501, 2553
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	9 cut(s)	283, 568, 855, 1357, 2040, 2089, 2588, 2940, 2968
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	3 cut(s)	743, 900, 1139
Bsh1236I	CGCG	2 cut(s)	435, 437
BshNI	GGYRCC	2 cut(s)	46, 925
BshVI	ATCGAT	1 cut(s)	1206
BsiHKAI	GWGCWC	2 cut(s)	1867, 3020
BsiHKCI	CYCGRG	2 cut(s)	1453, 2661
BsiSI	CCGG	9 cut(s)	41, 50, 188, 251, 396, 957, 1175, 2954, 3043
BslFI	GGGAC	6 cut(s)	122, 433, 1287, 1297, 2438, 2532
BslI	CCNNNNNNNGG	8 cut(s)	376, 481, 935, 1181, 1851, 2155, 2462, 3054
BsmAI	GTCTC	5 cut(s)	342, 1140, 1795, 2658, 2886
BsmFI	GGGAC	6 cut(s)	122, 433, 1287, 1297, 2438, 2532
BsmI	GAATGC	2 cut(s)	517, 2322
Bso31I	GGTCTC	1 cut(s)	342
BsoBI	CYCGRG	2 cut(s)	1453, 2661
Bsp1286I	GDGCHC	3 cut(s)	150, 1867, 3020
Bsp1407I	TGTACA	2 cut(s)	1704, 2946
Bsp19I	CCATGG	3 cut(s)	2154, 2280, 2550
BspACI	CCGC	6 cut(s)	62, 433, 437, 559, 1340, 2760
BspCNI	CTCAG	5 cut(s)	1357, 1379, 1420, 1792, 1968
BspDI	ATCGAT	1 cut(s)	1206
BspFNI	CGCG	2 cut(s)	435, 437
BspHI	TCATGA	1 cut(s)	1900
BspMAI	CTGCAG	1 cut(s)	873
BspMI	ACCTGC	3 cut(s)	352, 570, 1054
BspT107I	GGYRCC	2 cut(s)	46, 925
BspTNI	GGTCTC	1 cut(s)	342
BsrDI	GCAATG	3 cut(s)	863, 2880, 2964
BsrFI	RCCGGY	1 cut(s)	2953
BsrGI	TGTACA	2 cut(s)	1704, 2946
BsrI	ACTGG	6 cut(s)	187, 211, 1192, 1614, 1990, 2946
BssAI	RCCGGY	1 cut(s)	2953
BssNAI	GTATAC	1 cut(s)	1674
BssT1I	CCWWGG	6 cut(s)	480, 522, 1252, 2154, 2280, 2550
Bst1107I	GTATAC	1 cut(s)	1674
Bst2UI	CCWGG	4 cut(s)	1281, 1539, 2628, 2784
Bst6I	CTCTTC	3 cut(s)	68, 608, 2571
BstAUI	TGTACA	2 cut(s)	1704, 2946
BstDSI	CCRYGG	3 cut(s)	2154, 2280, 2550
BstEII	GGTNACC	2 cut(s)	1380, 2971
BstF5I	GGATG	6 cut(s)	197, 244, 667, 1670, 2095, 2614
BstFNI	CGCG	2 cut(s)	435, 437
BstHHI	GCGC	1 cut(s)	437
BstMAI	GTCTC	5 cut(s)	342, 1140, 1795, 2658, 2886
BstMWI	GCNNNNNNNGC	7 cut(s)	358, 533, 1892, 1942, 2099, 2706, 2879
BstNI	CCWGG	4 cut(s)	1281, 1539, 2628, 2784
BstNSI	RCATGY	4 cut(s)	1761, 2083, 2116, 2700
BstPI	GGTNACC	2 cut(s)	1380, 2971
BstSCI	CCNGG	7 cut(s)	250, 395, 955, 1279, 1537, 2626, 2782
BstSFI	CTRYAG	5 cut(s)	869, 1023, 1512, 1946, 2301
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	2 cut(s)	435, 437
BstV1I	GCAGC	9 cut(s)	283, 568, 855, 1357, 2040, 2089, 2588, 2940, 2968
BstV2I	GAAGAC	4 cut(s)	410, 894, 1145, 1423
BstX2I	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2122, 2224, 2236
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstYI	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2122, 2224, 2236
BstZ17I	GTATAC	1 cut(s)	1674
Bsu15I	ATCGAT	1 cut(s)	1206
BsuI	GTATCC	1 cut(s)	1305
BsuTUI	ATCGAT	1 cut(s)	1206
BtgI	CCRYGG	3 cut(s)	2154, 2280, 2550
BtsCI	GGATG	6 cut(s)	197, 244, 667, 1670, 2095, 2614
BtsIMutI	CAGTG	6 cut(s)	578, 675, 1037, 1955, 2859, 2939
BveI	ACCTGC	3 cut(s)	352, 570, 1054
CaiI	CAGNNNCTG	2 cut(s)	796, 1046
CciI	TCATGA	1 cut(s)	1900
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	1 cut(s)	2953
ClaI	ATCGAT	1 cut(s)	1206
Csp6I	GTAC	5 cut(s)	837, 1705, 2337, 2583, 2947
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviQI	GTAC	5 cut(s)	837, 1705, 2337, 2583, 2947
DraI	TTTAAA	1 cut(s)	1212
EaeI	YGGCCR	3 cut(s)	112, 640, 1987
Eam1104I	CTCTTC	3 cut(s)	68, 608, 2571
EarI	CTCTTC	3 cut(s)	68, 608, 2571
Ecl136II	GAGCTC	1 cut(s)	3018
Eco130I	CCWWGG	6 cut(s)	480, 522, 1252, 2154, 2280, 2550
Eco147I	AGGCCT	2 cut(s)	964, 1021
Eco24I	GRGCYC	1 cut(s)	3020
Eco31I	GGTCTC	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	2779
Eco47I	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2546, 3074
Eco53kI	GAGCTC	1 cut(s)	3018
Eco57I	CTGAAG	2 cut(s)	1062, 3034
Eco88I	CYCGRG	2 cut(s)	1453, 2661
Eco91I	GGTNACC	2 cut(s)	1380, 2971
EcoICRI	GAGCTC	1 cut(s)	3018
EcoO109I	RGGNCCY	3 cut(s)	1043, 1301, 1486
EcoO65I	GGTNACC	2 cut(s)	1380, 2971
EcoRI	GAATTC	4 cut(s)	139, 1258, 1357, 2435
EcoRII	CCWGG	4 cut(s)	1279, 1537, 2626, 2782
EcoRV	GATATC	1 cut(s)	2779
EcoT14I	CCWWGG	6 cut(s)	480, 522, 1252, 2154, 2280, 2550
EcoT22I	ATGCAT	3 cut(s)	519, 1775, 2698
EcoT38I	GRGCYC	1 cut(s)	3020
ErhI	CCWWGG	6 cut(s)	480, 522, 1252, 2154, 2280, 2550
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	6 cut(s)	122, 433, 1287, 1297, 2438, 2532
FauI	CCCGC	1 cut(s)	1347
FauNDI	CATATG	3 cut(s)	1222, 2686, 2923
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	2 cut(s)	628, 1673
Fnu4HI	GCNGC	9 cut(s)	297, 557, 869, 1371, 2029, 2103, 2577, 2929, 2982
FokI	GGATG	6 cut(s)	184, 251, 654, 1677, 2102, 2621
FriOI	GRGCYC	1 cut(s)	3020
Fsp4HI	GCNGC	9 cut(s)	297, 557, 869, 1371, 2029, 2103, 2577, 2929, 2982
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	9 cut(s)	297, 557, 869, 1371, 2029, 2103, 2577, 2929, 2982
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	2 cut(s)	2105, 2370
HapII	CCGG	9 cut(s)	41, 50, 188, 251, 396, 957, 1175, 2954, 3043
HhaI	GCGC	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	3 cut(s)	569, 2503, 2559
HindII	GTYRAC	3 cut(s)	569, 2503, 2559
HindIII	AAGCTT	3 cut(s)	350, 1893, 2646
HinfI	GANTC	7 cut(s)	1229, 1322, 1364, 1411, 1959, 1995, 2560
HpaII	CCGG	9 cut(s)	41, 50, 188, 251, 396, 957, 1175, 2954, 3043
HphI	GGTGA	4 cut(s)	1100, 1374, 2983, 3012
Hpy166II	GTNNAC	9 cut(s)	367, 569, 629, 887, 1674, 1705, 2503, 2559, 2947
Hpy8I	GTNNAC	9 cut(s)	367, 569, 629, 887, 1674, 1705, 2503, 2559, 2947
Hpy99I	CGWCG	1 cut(s)	498
HpyCH4IV	ACGT	1 cut(s)	631
HpyF10VI	GCNNNNNNNGC	7 cut(s)	358, 533, 1892, 1942, 2099, 2706, 2879
HpySE526I	ACGT	1 cut(s)	631
HspAI	GCGC	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	775
LmnI	GCTCC	6 cut(s)	162, 698, 852, 1591, 2187, 2284
Lsp1109I	GCAGC	9 cut(s)	283, 568, 855, 1357, 2040, 2089, 2588, 2940, 2968
LweI	GCATC	8 cut(s)	1058, 1624, 1782, 1969, 2080, 2335, 2365, 2599
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	9 cut(s)	1059, 1131, 1380, 1854, 2216, 2711, 2906, 2937, 2971
MfeI	CAATTG	2 cut(s)	1782, 2094
MflI	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2122, 2224, 2236
MhlI	GDGCHC	3 cut(s)	150, 1867, 3020
MlsI	TGGCCA	1 cut(s)	642
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	3 cut(s)	1358, 1420, 2554
MmeI	TCCRAC	5 cut(s)	203, 240, 453, 1061, 2463
Mox20I	TGGCCA	1 cut(s)	642
Mph1103I	ATGCAT	3 cut(s)	519, 1775, 2698
MroXI	GAANNNNTTC	1 cut(s)	1075
MscI	TGGCCA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	2 cut(s)	559, 1370
MspI	CCGG	9 cut(s)	41, 50, 188, 251, 396, 957, 1175, 2954, 3043
MspR9I	CCNGG	7 cut(s)	252, 397, 957, 1281, 1539, 2628, 2784
MunI	CAATTG	2 cut(s)	1782, 2094
Mva1269I	GAATGC	2 cut(s)	517, 2322
MvaI	CCWGG	4 cut(s)	1281, 1539, 2628, 2784
MvnI	CGCG	2 cut(s)	435, 437
MwoI	GCNNNNNNNGC	7 cut(s)	358, 533, 1892, 1942, 2099, 2706, 2879
NciI	CCSGG	3 cut(s)	252, 397, 957
NcoI	CCATGG	3 cut(s)	2154, 2280, 2550
NdeI	CATATG	3 cut(s)	1222, 2686, 2923
NmeAIII	GCCGAG	2 cut(s)	1470, 2015
NmuCI	GTSAC	5 cut(s)	1131, 1380, 2216, 2937, 2971
NsiI	ATGCAT	3 cut(s)	519, 1775, 2698
NspI	RCATGY	4 cut(s)	1761, 2083, 2116, 2700
PaeI	GCATGC	2 cut(s)	2083, 2700
PagI	TCATGA	1 cut(s)	1900
PceI	AGGCCT	2 cut(s)	964, 1021
PctI	GAATGC	2 cut(s)	517, 2322
PdmI	GAANNNNTTC	1 cut(s)	1075
PfeI	GAWTC	4 cut(s)	1229, 1322, 1959, 1995
PflFI	GACNNNGTC	2 cut(s)	1032, 2214
PflMI	CCANNNNNTGG	2 cut(s)	935, 2155
PfoI	TCCNGGA	1 cut(s)	2626
PkrI	GCNGC	9 cut(s)	298, 558, 870, 1372, 2030, 2104, 2578, 2930, 2983
PleI	GAGTC	3 cut(s)	1358, 1419, 2554
PpsI	GAGTC	3 cut(s)	1358, 1419, 2554
PpuMI	RGGWCCY	3 cut(s)	1043, 1301, 1486
PshBI	ATTAAT	1 cut(s)	999
Psp124BI	GAGCTC	1 cut(s)	3020
Psp5II	RGGWCCY	3 cut(s)	1043, 1301, 1486
Psp6I	CCWGG	4 cut(s)	1279, 1537, 2626, 2782
PspEI	GGTNACC	2 cut(s)	1380, 2971
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	4 cut(s)	1279, 1537, 2626, 2782
PspPPI	RGGWCCY	3 cut(s)	1043, 1301, 1486
PstI	CTGCAG	1 cut(s)	873
PstNI	CAGNNNCTG	2 cut(s)	796, 1046
PsuI	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2122, 2224, 2236
PsyI	GACNNNGTC	2 cut(s)	1032, 2214
PvuII	CAGCTG	1 cut(s)	1370
RsaI	GTAC	5 cut(s)	838, 1706, 2338, 2584, 2948
RsaNI	GTAC	5 cut(s)	837, 1705, 2337, 2583, 2947
RseI	CAYNNNNRTG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	3020
SatI	GCNGC	9 cut(s)	297, 557, 869, 1371, 2029, 2103, 2577, 2929, 2982
SchI	GAGTC	3 cut(s)	1358, 1420, 2554
ScrFI	CCNGG	7 cut(s)	252, 397, 957, 1281, 1539, 2628, 2784
SduI	GDGCHC	3 cut(s)	150, 1867, 3020
SfaNI	GCATC	8 cut(s)	1058, 1624, 1782, 1969, 2080, 2335, 2365, 2599
SfcI	CTRYAG	5 cut(s)	869, 1023, 1512, 1946, 2301
SinI	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2546, 3074
SmiI	ATTTAAAT	1 cut(s)	1212
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	3 cut(s)	347, 879, 1141
SmoI	CTYRAG	3 cut(s)	347, 879, 1141
SpeI	ACTAGT	1 cut(s)	1928
SphI	GCATGC	2 cut(s)	2083, 2700
SseBI	AGGCCT	2 cut(s)	964, 1021
SsiI	CCGC	6 cut(s)	62, 433, 437, 559, 1340, 2760
SspI	AATATT	1 cut(s)	832
SstI	GAGCTC	1 cut(s)	3020
StuI	AGGCCT	2 cut(s)	964, 1021
StyD4I	CCNGG	7 cut(s)	250, 395, 955, 1279, 1537, 2626, 2782
StyI	CCWWGG	6 cut(s)	480, 522, 1252, 2154, 2280, 2550
SwaI	ATTTAAAT	1 cut(s)	1212
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	1 cut(s)	1206
TaqII	GACCGA	3 cut(s)	1301, 1368, 2534
TatI	WGTACW	3 cut(s)	1704, 2582, 2946
TfiI	GAWTC	4 cut(s)	1229, 1322, 1959, 1995
TscAI	CASTG	6 cut(s)	578, 682, 1037, 1955, 2866, 2946
TseFI	GTSAC	5 cut(s)	1131, 1380, 2216, 2937, 2971
TseI	GCWGC	9 cut(s)	296, 556, 868, 1370, 2028, 2102, 2576, 2928, 2981
Tsp45I	GTSAC	5 cut(s)	1131, 1380, 2216, 2937, 2971
TspGWI	ACGGA	5 cut(s)	895, 1146, 1433, 1556, 2904
TspRI	CASTG	6 cut(s)	578, 682, 1037, 1955, 2866, 2946
Tth111I	GACNNNGTC	2 cut(s)	1032, 2214
Van91I	CCANNNNNTGG	2 cut(s)	935, 2155
VpaK11BI	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2546, 3074
VspI	ATTAAT	1 cut(s)	999
XapI	RAATTY	6 cut(s)	28, 139, 1258, 1357, 1811, 2435
XbaI	TCTAGA	3 cut(s)	1570, 1630, 1867
XceI	RCATGY	4 cut(s)	1761, 2083, 2116, 2700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmaJI	CCTAGG	1 cut(s)	1252
XmiI	GTMKAC	2 cut(s)	628, 1673
XmnI	GAANNNNTTC	1 cut(s)	1075
Zsp2I	ATGCAT	3 cut(s)	519, 1775, 2698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.