Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001572

Physical Location & Seq

Genomic Coordinates Reverse (-)

50862801 .. 50870692

Gene Structure 7892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3114 bp

ATGGAGGGTTTTGGAGCCAAGAATCGTGGGTTTTATGGTCCGGTGGTGACGGATTTGAGGGGAGTTGGGAAGAGGAGTTTGGAGTGGGATTTGAATAATTGGAAGTGGGATGGTGATCTTTTTGCTGCTAGTCCTTTGAATTCTGTGCTGTCTGATTGTAGGAGTAGGCAGTTGTTCCCGGCTGGGCCGGGAACTCTTTCCAATGCTGGCTTCTCCAACAGTTGTTCGTCAGGTTCGGATGATGTCAGTCCCGGGAATGAGAAAGGGAAGAGAGAAGTGGAGAAAAGGAGACGGGGTGTTGTTATGGAAAATGAAGAGTTGCATGATGAAGCTAGGTCTCTTAATCTTAACCTTGGAGGGCAAGCTTACCCGATTGTTGAAGGAGAGGTAAATACTGGGAAGAAGACAAAGATAGTTGGGAATGGGACTACTTCAAATCGCGCTGTTTGTCAGGTGGAGGACTGTAGGGCTGATCTTAGCAATGCCAAGGATTATCACAGACGGCATAAGGTCTGTGTTATGCATTCTAAGGCGAGTGAAGCACTGGTGGGAAATGCTATGCAGCGGTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTAAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGAGGAGAAGAAAAACACTTACTGATACAGCTGTTAATGCAGGCTCCGTGAGCGATGAAATTGGAAGCAGTTATCTATTAATTAGTTTGCTGAGAATACTCTCCAATATGTCTAATAGTTCTGATCAAACGAAGGATCAGGATCTGCTATCTCACCTTTTGAAGAGCCTAGCCAATCTTGCTGGTACAGTTGATGGGAGAAACATATCTGCATTACTTCAGGCATCTCAAGGTTTACCTAACACTGGGTCTTCTATCAAGACTGCACAACAGGTTCCAGATACGGTTTCCAACATCTTTGAACCCTGTAGGCCTTCTGTTTCTGCCTCAAGTATGGATGATTGTGTTATTATTGAGGAACCTTTAAGGCCCATAGGACAGCTCCCGATATTACCTGCATCAGATATGCAAAAGAGAAGATCTTCAGTTGATGGCGATCTTGGAAGTCAAATTACTTCAGGTCTACAGGCCAACAAGCCACTTCCTTCAAGAGAAAGTGCTCCAACCAATTCAGTTACACCAATCCAGTTACTTGAGATTGATTTAAATAGTCCATATGATGATTCACAGGACTATTTAGAGAACCTAGGGACTTGTCATGTCACTATAAATCCAGGGATACAACAAGATTCTCACAAGTCAAGCCCACCTCAGACCAGTGGGAATTCAGACTCAACTTTTACTCAGTCACCATCAAGTTCTAGTGGAGAATCTCAGATTGAAAAGCTAGTAGTGAATGTGTGTGGAGTCTTAACTGCTCTTTTTTCTGGAAAATATCAGAATCGCACAGACCGCATTGTTTTTAAACTCTTTGGAAAAGACCCGAATGAACTTCCATTTGTTCTGCGATCACAGATTGTCGACTGGTTATCCCATAGTCCTACAGAGATTGAAAGCTATATAAGGCCAGGATGCATCATTTTGACAATTTACCTCCGTCTAGAAAAATCCACGTGGGAGGAGCTCTGCTGTCATCTGGGATCCAGTTTGCAAAGACTTTTAGATGCTGCCAATGATCCTTTCTGGAGAACAGGATGGGTGTATACTAGGATGCAACATTTTGTTGCGTTTATGTACAATGGTCAAGTTGTTTTAGACACAACCTTACCTCTCAAAAGCCAAAAAAGTTGCAGGATATCAAGCATTAAACCAATTGCAGTCTCTTTATCTGAGAGAGCCCAGTTTGTTGTAAAAGGCTTTAACCTTCCTCATTCCACCACAAGGTTACTATGTGCTCTAGAAGGGAAGTATCTGGCGCAAGAGGCTTGTGATGACGTGATGGATGGTGCTGATACAACTGTTGAGCATGATGAGCCACAGTGTATCAGATTCTCCTGCTCTATACCAAATGTTACTGGGCGAGGATTCATTGAGGTTGAAGATCTTGGTCTCAGTAGCAGCTTCTTTCCATTTATAGTTGCAGAGCAGGAAGTTTGTTCAGAGATTTGTATGCTGGAGGATGCGATTGAGGCAGCTGAGACTGTTGATGACATCCAGGCAGATCCTGAAATATTAGAAGCCAAGAACCAGGCTATGGACTTTATACATGAATTGGGTTGGCTTCTTCATAGAAGTCATGTTAAGTTTAGACTTGGTCACCTGGATCCCAACCTAGATCTATTTCCTTTTAGACGGTTCAAATTACTTATGGAGTTTTCCGTGGATCATGACTGGTGTGCTGTAGTGAAGAAACTCTTAAAGCTTCTGTTTGACAGTACTGTTGACGCCGGAGAACATCCTTCCGTTCAGCTTGCATTATTGGATATGGCCCTCCTCCACAGAGCTGTTCGAAGAAATTGCAGACCTATGGTAGAACTGTTGTTAAGATTTGTTCCAGATAAAGGTTTAGAATCTGAACACAAGAAATACGTTGAAGGGGAAGACAACAGTTTCTTATTTAAACCTGATGGTGTTGGTCCCCTGGGGTTGACTCCTCTTCATGTTGCAGCTAGTATCGATGGTTGTGAGCACGTATTGGATGCTTTAACTGATGATCCTGGAAAGGTGGGAATTGAAGCTTGGAAAAATGCTCGAGACAGTATAGGAATGACACCATATGGTTATGCATCCATGCAAGGCCGCTACTCCTATATCAATCTTGTTCAGAGGAAAATCAGCAAGAAACTTGAGAGTGGGCATGTGGTTCTTGATATCCCCGGCACTGTGTTAGAGAGCAATAGCAAGCAGAAGCAATCAGATGGGCATAGATCATCAAAAGTAGCTAGCCTCGACACCGAAAAGTTTGAAATAAATGCATTAATACGAAGAGATTGCAAGTTATGTAGCCAGAAACTAGCTTATGGCAGCACAAGGTCACTGGTGTACAGGCCGGCAATGTTGTCAATGGTGGCCATTGCTGCCGTCTGTGTCTGTGTGGCCTTGCTCTTTAAGAGCACACCTGAAGTTGTTTTCATCTTCCACCCCTTCCGGTGGGAGCATTTGAAGTTTGGCTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

1037

Amino Acids

114.81

Weight (kDa)

6.25

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	150 - 223	2e-29	SBP domain
Ig_SPL7	PF26102	591 - 702	6.3e-44	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47070 AT2G47070 AT3G60030
fragaria_vesca	FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420
malus_domestica	MD13G1141300.v1.1 MD13G1141400.v1.1 MD16G1137600.v1.1 MD16G1137700.v1.1
prunus_persica	Prupe.1G106500_v2.0.a1 Prupe.1G106500_v2.0.a1 Prupe.1G106600_v2.0.a1
pyrus_communis	pycom13g12280 pycom13g12290 pycom16g12140 pycom16g12150 pycom16g12160
rosa_chinensis	RchiOBHm_Chr4g0427341 RchiOBHm_Chr4g0427351
rosa_laevigata	RLG00000007250 RLG00000007251
rosa_multiflora	Rmu_sc0003813.1_g000017 Rmu_sc0003813.1_g000018
rosa_roxburghii	Rroxscaffold_5G00369020 Rroxscaffold_5G00369030
rosa_rugosa	Rorug04G0216800
rosa_samantha	Rh4AG273100 Rh4AG273300 Rh4BG278800 Rh4BG278900 Rh4CG294100 Rh4CG294200 Rh4DG276200 Rh4DG276300
rosa_wichuraiana	Rw4G023700 Rw4G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	576, 1057
AccB7I	CCANNNNNTGG	1 cut(s)	2188
AccI	GTMKAC	3 cut(s)	1117, 1515, 1697
AccII	CGCG	1 cut(s)	441
AciI	CCGC	3 cut(s)	565, 1447, 2734
AcoI	YGGCCR	2 cut(s)	646, 3003
AcsI	RAATTY	2 cut(s)	139, 1318
AcuI	CTGAAG	4 cut(s)	857, 1062, 1095, 3075
AcvI	CACGTG	1 cut(s)	1608
AcyI	GRCGYC	1 cut(s)	2379
AfaI	GTAC	4 cut(s)	841, 1730, 2371, 2978
AfiI	CCNNNNNNNGG	5 cut(s)	899, 1875, 2188, 2495, 3084
AjiI	CACGTC	1 cut(s)	1930
AjnI	CCWGG	7 cut(s)	1267, 1561, 2148, 2181, 2253, 2574, 2650
AjuI	GAANNNNNNNTTGG	8 cut(s)	62, 94, 194, 226, 1658, 1690, 2656, 2688
Alw21I	GWGCWC	5 cut(s)	1156, 1620, 1891, 2625, 3050
Alw26I	GTCTC	6 cut(s)	283, 342, 1819, 2048, 2126, 2682
AlwNI	CAGNNNCTG	2 cut(s)	799, 2159
Ama87I	CYCGRG	2 cut(s)	251, 2685
ApeKI	GCWGC	8 cut(s)	125, 562, 1661, 2052, 2126, 2600, 2958, 3011
ApoI	RAATTY	2 cut(s)	139, 1318
AseI	ATTAAT	2 cut(s)	734, 2912
Asp700I	GAANNNNTTC	2 cut(s)	196, 1075
AspA2I	CCTAGG	1 cut(s)	1240
AspLEI	GCGC	2 cut(s)	443, 1912
AspS9I	GGNCC	5 cut(s)	38, 185, 1023, 2422, 2570
AsuC2I	CCSGG	5 cut(s)	179, 189, 252, 253, 2811
AsuHPI	GGTGA	5 cut(s)	58, 125, 800, 1335, 2243
AsuII	TTCGAA	1 cut(s)	2443
AsuNHI	GCTAGC	1 cut(s)	2876
AvaI	CYCGRG	2 cut(s)	251, 2685
AvaII	GGWCC	2 cut(s)	38, 2570
AvrII	CCTAGG	1 cut(s)	1240
BaeI	ACNNNNGTAYC	4 cut(s)	672, 705, 1938, 1971
BalI	TGGCCA	2 cut(s)	648, 3005
BamHI	GGATCC	2 cut(s)	1634, 2257
BanII	GRGCYC	2 cut(s)	1620, 1834
BarI	GAAGNNNNNNTAC	2 cut(s)	1090, 1122
BbrPI	CACGTG	1 cut(s)	1608
BbsI	GAAGAC	3 cut(s)	410, 897, 2541
Bbv12I	GWGCWC	5 cut(s)	1156, 1620, 1891, 2625, 3050
BbvI	GCAGC	8 cut(s)	112, 574, 1648, 2064, 2138, 2612, 2970, 2998
BceAI	ACGGC	2 cut(s)	518, 2999
BcgI	CGANNNNNNTGC	4 cut(s)	2433, 2467, 2907, 2941
BciT130I	CCWGG	7 cut(s)	1269, 1563, 2150, 2183, 2255, 2576, 2652
BciVI	GTATCC	1 cut(s)	1266
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	5 cut(s)	179, 189, 252, 253, 2811
BcoDI	GTCTC	6 cut(s)	283, 342, 1819, 2048, 2126, 2682
BfmI	CTRYAG	5 cut(s)	463, 961, 1118, 1536, 2334
BfuAI	ACCTGC	2 cut(s)	576, 1057
BfuI	GTATCC	1 cut(s)	1266
BglII	AGATCT	3 cut(s)	1073, 2035, 2269
BisI	GCNGC	9 cut(s)	126, 563, 1662, 2053, 2127, 2601, 2734, 2959, 3012
BlnI	CCTAGG	1 cut(s)	1240
BlsI	GCNGC	9 cut(s)	127, 564, 1663, 2054, 2128, 2602, 2735, 2960, 3013
BmcAI	AGTACT	1 cut(s)	2371
Bme18I	GGWCC	2 cut(s)	38, 2570
BmeT110I	CYCGRG	2 cut(s)	251, 2685
BmgBI	CACGTC	1 cut(s)	1930
BmgT120I	GGNCC	5 cut(s)	38, 185, 1023, 2422, 2570
BmiI	GGNNCC	7 cut(s)	16, 700, 930, 1014, 1636, 2259, 2572
BmrI	ACTGGG	4 cut(s)	405, 909, 1828, 2019
BmsI	GCATC	9 cut(s)	887, 1061, 1556, 1578, 1648, 1695, 2104, 2623, 2729
BmtI	GCTAGC	1 cut(s)	2880
BmuI	ACTGGG	4 cut(s)	405, 909, 1828, 2019
BpiI	GAAGAC	3 cut(s)	410, 897, 2541
BpmI	CTGGAG	2 cut(s)	1699, 2129
Bpu14I	TTCGAA	1 cut(s)	2443
BpuEI	CTTGAG	5 cut(s)	867, 967, 1208, 2801, 3091
BpuMI	CCSGG	5 cut(s)	179, 189, 252, 253, 2811
Bsa29I	ATCGAT	1 cut(s)	2610
BsaAI	YACGTR	2 cut(s)	1608, 2626
BsaBI	GATNNNNATC	3 cut(s)	114, 795, 1089
BsaHI	GRCGYC	1 cut(s)	2379
BsaI	GGTCTC	2 cut(s)	342, 2048
BsaJI	CCNNGG	9 cut(s)	251, 352, 486, 1240, 1268, 2313, 2574, 2575, 2809
BsaWI	WCCGGW	2 cut(s)	40, 3081
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	5 cut(s)	899, 1875, 2188, 2495, 3084
Bse118I	RCCGGY	1 cut(s)	2983
Bse3DI	GCAATG	3 cut(s)	487, 2994, 3006
Bse8I	GATNNNNATC	3 cut(s)	114, 795, 1089
BseBI	CCWGG	7 cut(s)	1269, 1563, 2150, 2183, 2255, 2576, 2652
BseCI	ATCGAT	1 cut(s)	2610
BseDI	CCNNGG	9 cut(s)	251, 352, 486, 1240, 1268, 2313, 2574, 2575, 2809
BseJI	GATNNNNATC	3 cut(s)	114, 795, 1089
BseLI	CCNNNNNNNGG	5 cut(s)	899, 1875, 2188, 2495, 3084
BseMI	GCAATG	3 cut(s)	487, 2994, 3006
BseMII	CTCAG	7 cut(s)	737, 1319, 1352, 1382, 1815, 2059, 2121
BseRI	GAGGAG	5 cut(s)	88, 673, 1628, 2417, 2577
BseXI	GCAGC	8 cut(s)	112, 574, 1648, 2064, 2138, 2612, 2970, 2998
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	903
Bsh1236I	CGCG	1 cut(s)	441
BshVI	ATCGAT	1 cut(s)	2610
BsiHKAI	GWGCWC	5 cut(s)	1156, 1620, 1891, 2625, 3050
BsiHKCI	CYCGRG	2 cut(s)	251, 2685
BsiSI	CCGG	8 cut(s)	41, 179, 188, 252, 2382, 2811, 2984, 3082
BslFI	GGGAC	4 cut(s)	234, 439, 1258, 2556
BslI	CCNNNNNNNGG	5 cut(s)	899, 1875, 2188, 2495, 3084
BsmAI	GTCTC	6 cut(s)	283, 342, 1819, 2048, 2126, 2682
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	4 cut(s)	234, 439, 1258, 2556
BsmI	GAATGC	1 cut(s)	523
Bso31I	GGTCTC	2 cut(s)	342, 2048
BsoBI	CYCGRG	2 cut(s)	251, 2685
Bsp119I	TTCGAA	1 cut(s)	2443
Bsp1286I	GDGCHC	6 cut(s)	1156, 1620, 1834, 1891, 2625, 3050
Bsp1407I	TGTACA	2 cut(s)	1728, 2976
BspACI	CCGC	3 cut(s)	565, 1447, 2734
BspCNI	CTCAG	7 cut(s)	738, 1318, 1351, 1381, 1816, 2058, 2122
BspDI	ATCGAT	1 cut(s)	2610
BspFNI	CGCG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	2320
BspLI	GGNNCC	7 cut(s)	16, 700, 930, 1014, 1636, 2259, 2572
BspMI	ACCTGC	2 cut(s)	576, 1057
BspOI	GCTAGC	1 cut(s)	2880
BspQI	GCTCTTC	1 cut(s)	812
BspT104I	TTCGAA	1 cut(s)	2443
BspTNI	GGTCTC	2 cut(s)	342, 2048
BsrDI	GCAATG	3 cut(s)	487, 2994, 3006
BsrFI	RCCGGY	1 cut(s)	2983
BsrGI	TGTACA	2 cut(s)	1728, 2976
BssAI	RCCGGY	1 cut(s)	2983
BssECI	CCNNGG	9 cut(s)	251, 352, 486, 1240, 1268, 2313, 2574, 2575, 2809
BssNAI	GTATAC	1 cut(s)	1698
BssNI	GRCGYC	1 cut(s)	2379
BssT1I	CCWWGG	3 cut(s)	352, 486, 1240
Bst1107I	GTATAC	1 cut(s)	1698
Bst2UI	CCWGG	7 cut(s)	1269, 1563, 2150, 2183, 2255, 2576, 2652
Bst6I	CTCTTC	7 cut(s)	65, 263, 309, 614, 812, 2595, 2914
BstACI	GRCGYC	1 cut(s)	2379
BstAUI	TGTACA	2 cut(s)	1728, 2976
BstBAI	YACGTR	2 cut(s)	1608, 2626
BstBI	TTCGAA	1 cut(s)	2443
BstC8I	GCNNGC	8 cut(s)	208, 363, 646, 697, 2406, 2837, 2878, 2985
BstDEI	CTNAG	9 cut(s)	476, 528, 746, 1305, 1338, 1368, 1824, 2045, 2130
BstDSI	CCRYGG	1 cut(s)	2313
BstEII	GGTNACC	1 cut(s)	2249
BstFNI	CGCG	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	443, 1912
BstMAI	GTCTC	6 cut(s)	283, 342, 1819, 2048, 2126, 2682
BstMWI	GCNNNNNNNGC	9 cut(s)	539, 692, 705, 833, 1446, 1916, 1966, 2123, 3011
BstNI	CCWGG	7 cut(s)	1269, 1563, 2150, 2183, 2255, 2576, 2652
BstNSI	RCATGY	1 cut(s)	2795
BstPI	GGTNACC	1 cut(s)	2249
BstSFI	CTRYAG	5 cut(s)	463, 961, 1118, 1536, 2334
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	8 cut(s)	112, 574, 1648, 2064, 2138, 2612, 2970, 2998
BstV2I	GAAGAC	3 cut(s)	410, 897, 2541
BstX2I	RGATCY	7 cut(s)	796, 1073, 1634, 2035, 2155, 2257, 2269
BstYI	RGATCY	7 cut(s)	796, 1073, 1634, 2035, 2155, 2257, 2269
BstZ17I	GTATAC	1 cut(s)	1698
Bsu15I	ATCGAT	1 cut(s)	2610
BsuI	GTATCC	1 cut(s)	1266
BsuTUI	ATCGAT	1 cut(s)	2610
BtgI	CCRYGG	1 cut(s)	2313
BtgZI	GCGATG	1 cut(s)	723
BtrI	CACGTC	1 cut(s)	1930
BtsIMutI	CAGTG	7 cut(s)	542, 584, 897, 1318, 1979, 2814, 2969
BveI	ACCTGC	2 cut(s)	576, 1057
Cac8I	GCNNGC	8 cut(s)	208, 363, 646, 697, 2406, 2837, 2878, 2985
CaiI	CAGNNNCTG	2 cut(s)	799, 2159
CciI	TCATGA	1 cut(s)	2320
CfoI	GCGC	2 cut(s)	443, 1912
Cfr10I	RCCGGY	1 cut(s)	2983
Cfr13I	GGNCC	5 cut(s)	38, 185, 1023, 2422, 2570
Cfr9I	CCCGGG	1 cut(s)	251
ClaI	ATCGAT	1 cut(s)	2610
CseI	GACGC	1 cut(s)	2387
Csp6I	GTAC	4 cut(s)	840, 1729, 2370, 2977
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviQI	GTAC	4 cut(s)	840, 1729, 2370, 2977
DdeI	CTNAG	9 cut(s)	476, 528, 746, 1305, 1338, 1368, 1824, 2045, 2130
DraI	TTTAAA	3 cut(s)	1200, 1459, 2554
EaeI	YGGCCR	2 cut(s)	646, 3003
Eam1104I	CTCTTC	7 cut(s)	65, 263, 309, 614, 812, 2595, 2914
EarI	CTCTTC	7 cut(s)	65, 263, 309, 614, 812, 2595, 2914
Ecl136II	GAGCTC	1 cut(s)	1618
Eco130I	CCWWGG	3 cut(s)	352, 486, 1240
Eco147I	AGGCCT	1 cut(s)	967
Eco24I	GRGCYC	2 cut(s)	1620, 1834
Eco31I	GGTCTC	2 cut(s)	342, 2048
Eco32I	GATATC	2 cut(s)	1791, 2806
Eco47I	GGWCC	2 cut(s)	38, 2570
Eco53kI	GAGCTC	1 cut(s)	1618
Eco57I	CTGAAG	4 cut(s)	857, 1062, 1095, 3075
Eco72I	CACGTG	1 cut(s)	1608
Eco88I	CYCGRG	2 cut(s)	251, 2685
Eco91I	GGTNACC	1 cut(s)	2249
EcoICRI	GAGCTC	1 cut(s)	1618
EcoO65I	GGTNACC	1 cut(s)	2249
EcoRI	GAATTC	2 cut(s)	139, 1318
EcoRII	CCWGG	7 cut(s)	1267, 1561, 2148, 2181, 2253, 2574, 2650
EcoRV	GATATC	2 cut(s)	1791, 2806
EcoT14I	CCWWGG	3 cut(s)	352, 486, 1240
EcoT22I	ATGCAT	4 cut(s)	525, 1571, 2722, 2911
EcoT38I	GRGCYC	2 cut(s)	1620, 1834
ErhI	CCWWGG	3 cut(s)	352, 486, 1240
Esp3I	CGTCTC	1 cut(s)	283
FalI	AAGNNNNNCTT	2 cut(s)	2333, 2365
FaqI	GGGAC	4 cut(s)	234, 439, 1258, 2556
FauNDI	CATATG	2 cut(s)	1210, 2710
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	3 cut(s)	1117, 1515, 1697
Fnu4HI	GCNGC	9 cut(s)	126, 563, 1662, 2053, 2127, 2601, 2734, 2959, 3012
FriOI	GRGCYC	2 cut(s)	1620, 1834
Fsp4HI	GCNGC	9 cut(s)	126, 563, 1662, 2053, 2127, 2601, 2734, 2959, 3012
GlaI	GCGC	2 cut(s)	442, 1911
GluI	GCNGC	9 cut(s)	126, 563, 1662, 2053, 2127, 2601, 2734, 2959, 3012
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	2 cut(s)	1699, 2129
HapII	CCGG	8 cut(s)	41, 179, 188, 252, 2382, 2811, 2984, 3082
HgaI	GACGC	1 cut(s)	2387
HhaI	GCGC	2 cut(s)	443, 1912
Hin1I	GRCGYC	1 cut(s)	2379
Hin6I	GCGC	2 cut(s)	441, 1910
HinP1I	GCGC	2 cut(s)	441, 1910
HincII	GTYRAC	4 cut(s)	575, 1516, 2377, 2583
HindII	GTYRAC	4 cut(s)	575, 1516, 2377, 2583
HindIII	AAGCTT	3 cut(s)	363, 2354, 2670
HpaII	CCGG	8 cut(s)	41, 179, 188, 252, 2382, 2811, 2984, 3082
HphI	GGTGA	5 cut(s)	58, 125, 800, 1335, 2243
Hpy166II	GTNNAC	8 cut(s)	575, 890, 1118, 1516, 1698, 2377, 2583, 2977
Hpy8I	GTNNAC	8 cut(s)	575, 890, 1118, 1516, 1698, 2377, 2583, 2977
HpyCH4IV	ACGT	4 cut(s)	1607, 1929, 2523, 2625
HpyF10VI	GCNNNNNNNGC	9 cut(s)	539, 692, 705, 833, 1446, 1916, 1966, 2123, 3011
HpyF3I	CTNAG	9 cut(s)	476, 528, 746, 1305, 1338, 1368, 1824, 2045, 2130
HpySE526I	ACGT	4 cut(s)	1607, 1929, 2523, 2625
Hsp92I	GRCGYC	1 cut(s)	2379
HspAI	GCGC	2 cut(s)	441, 1910
KroI	GCCGGC	1 cut(s)	2983
KroNI	GCCGGC	1 cut(s)	2985
Ksp22I	TGATCA	1 cut(s)	778
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	6 cut(s)	14, 704, 1041, 1159, 1615, 3088
Lsp1109I	GCAGC	8 cut(s)	112, 574, 1648, 2064, 2138, 2612, 2970, 2998
LweI	GCATC	9 cut(s)	887, 1061, 1556, 1578, 1648, 1695, 2104, 2623, 2729
MaeII	ACGT	4 cut(s)	1607, 1929, 2523, 2625
MaeIII	GTNAC	9 cut(s)	46, 1168, 1182, 1255, 1341, 1878, 2005, 2249, 2967
MfeI	CAATTG	1 cut(s)	1806
MflI	RGATCY	7 cut(s)	796, 1073, 1634, 2035, 2155, 2257, 2269
MhlI	GDGCHC	6 cut(s)	1156, 1620, 1834, 1891, 2625, 3050
MlsI	TGGCCA	2 cut(s)	648, 3005
MluNI	TGGCCA	2 cut(s)	648, 3005
MlyI	GAGTC	3 cut(s)	1319, 1410, 2578
MmeI	TCCRAC	3 cut(s)	240, 969, 1181
Mox20I	TGGCCA	2 cut(s)	648, 3005
Mph1103I	ATGCAT	4 cut(s)	525, 1571, 2722, 2911
MroNI	GCCGGC	1 cut(s)	2983
MroXI	GAANNNNTTC	2 cut(s)	196, 1075
MscI	TGGCCA	2 cut(s)	648, 3005
Msp20I	TGGCCA	2 cut(s)	648, 3005
MspA1I	CMGCKG	3 cut(s)	565, 686, 2129
MspI	CCGG	8 cut(s)	41, 179, 188, 252, 2382, 2811, 2984, 3082
MunI	CAATTG	1 cut(s)	1806
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	7 cut(s)	1269, 1563, 2150, 2183, 2255, 2576, 2652
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	9 cut(s)	539, 692, 705, 833, 1446, 1916, 1966, 2123, 3011
NaeI	GCCGGC	1 cut(s)	2985
NciI	CCSGG	5 cut(s)	179, 189, 252, 253, 2811
NdeI	CATATG	2 cut(s)	1210, 2710
NgoMIV	GCCGGC	1 cut(s)	2983
NheI	GCTAGC	1 cut(s)	2876
NlaIV	GGNNCC	7 cut(s)	16, 700, 930, 1014, 1636, 2259, 2572
NmuCI	GTSAC	5 cut(s)	46, 1255, 1341, 2249, 2967
NsiI	ATGCAT	4 cut(s)	525, 1571, 2722, 2911
NspI	RCATGY	1 cut(s)	2795
NspV	TTCGAA	1 cut(s)	2443
PaeR7I	CTCGAG	1 cut(s)	2685
PagI	TCATGA	1 cut(s)	2320
PasI	CCCWGGG	1 cut(s)	2575
PceI	AGGCCT	1 cut(s)	967
PciSI	GCTCTTC	1 cut(s)	812
PctI	GAATGC	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	2985
PdmI	GAANNNNTTC	2 cut(s)	196, 1075
PfeI	GAWTC	8 cut(s)	22, 1217, 1283, 1364, 1435, 1983, 2019, 2504
PflFI	GACNNNGTC	1 cut(s)	2247
PflMI	CCANNNNNTGG	1 cut(s)	2188
PfoI	TCCNGGA	1 cut(s)	2650
PkrI	GCNGC	9 cut(s)	127, 564, 1663, 2054, 2128, 2602, 2735, 2960, 3013
PleI	GAGTC	3 cut(s)	1319, 1409, 2578
PmaCI	CACGTG	1 cut(s)	1608
PmlI	CACGTG	1 cut(s)	1608
PpsI	GAGTC	3 cut(s)	1319, 1409, 2578
Ppu21I	YACGTR	2 cut(s)	1608, 2626
PshBI	ATTAAT	2 cut(s)	734, 2912
Psp124BI	GAGCTC	1 cut(s)	1620
Psp6I	CCWGG	7 cut(s)	1267, 1561, 2148, 2181, 2253, 2574, 2650
PspCI	CACGTG	1 cut(s)	1608
PspEI	GGTNACC	1 cut(s)	2249
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	7 cut(s)	1267, 1561, 2148, 2181, 2253, 2574, 2650
PspN4I	GGNNCC	7 cut(s)	16, 700, 930, 1014, 1636, 2259, 2572
PspPI	GGNCC	5 cut(s)	38, 185, 1023, 2422, 2570
PstNI	CAGNNNCTG	2 cut(s)	799, 2159
PsuI	RGATCY	7 cut(s)	796, 1073, 1634, 2035, 2155, 2257, 2269
PsyI	GACNNNGTC	1 cut(s)	2247
PvuII	CAGCTG	2 cut(s)	686, 2129
RsaI	GTAC	4 cut(s)	841, 1730, 2371, 2978
RsaNI	GTAC	4 cut(s)	840, 1729, 2370, 2977
SacI	GAGCTC	1 cut(s)	1620
SalI	GTCGAC	1 cut(s)	1514
SapI	GCTCTTC	1 cut(s)	812
SatI	GCNGC	9 cut(s)	126, 563, 1662, 2053, 2127, 2601, 2734, 2959, 3012
Sau96I	GGNCC	5 cut(s)	38, 185, 1023, 2422, 2570
ScaI	AGTACT	1 cut(s)	2371
SchI	GAGTC	3 cut(s)	1319, 1410, 2578
SduI	GDGCHC	6 cut(s)	1156, 1620, 1834, 1891, 2625, 3050
SfaNI	GCATC	9 cut(s)	887, 1061, 1556, 1578, 1648, 1695, 2104, 2623, 2729
SfcI	CTRYAG	5 cut(s)	463, 961, 1118, 1536, 2334
Sfr274I	CTCGAG	1 cut(s)	2685
SfuI	TTCGAA	1 cut(s)	2443
SinI	GGWCC	2 cut(s)	38, 2570
SlaI	CTCGAG	1 cut(s)	2685
SmaI	CCCGGG	1 cut(s)	253
SmiI	ATTTAAAT	1 cut(s)	1200
SmlI	CTYRAG	6 cut(s)	882, 982, 1187, 2685, 2780, 3106
SmoI	CTYRAG	6 cut(s)	882, 982, 1187, 2685, 2780, 3106
SseBI	AGGCCT	1 cut(s)	967
SsiI	CCGC	3 cut(s)	565, 1447, 2734
SspI	AATATT	1 cut(s)	2166
SstI	GAGCTC	1 cut(s)	1620
StuI	AGGCCT	1 cut(s)	967
StyI	CCWWGG	3 cut(s)	352, 486, 1240
SwaI	ATTTAAAT	1 cut(s)	1200
TaiI	ACGT	4 cut(s)	1610, 1932, 2526, 2628
TaqI	TCGA	5 cut(s)	1515, 2443, 2610, 2686, 2883
TatI	WGTACW	3 cut(s)	1728, 2369, 2976
TauI	GCSGC	1 cut(s)	2736
TfiI	GAWTC	8 cut(s)	22, 1217, 1283, 1364, 1435, 1983, 2019, 2504
TscAI	CASTG	7 cut(s)	549, 584, 904, 1318, 1979, 2821, 2976
TseFI	GTSAC	5 cut(s)	46, 1255, 1341, 2249, 2967
TseI	GCWGC	8 cut(s)	125, 562, 1661, 2052, 2126, 2600, 2958, 3011
Tsp45I	GTSAC	5 cut(s)	46, 1255, 1341, 2249, 2967
TspGWI	ACGGA	5 cut(s)	65, 691, 1580, 2302, 2386
TspMI	CCCGGG	1 cut(s)	251
TspRI	CASTG	7 cut(s)	549, 584, 904, 1318, 1979, 2821, 2976
Tth111I	GACNNNGTC	1 cut(s)	2247
Van91I	CCANNNNNTGG	1 cut(s)	2188
VpaK11BI	GGWCC	2 cut(s)	38, 2570
VspI	ATTAAT	2 cut(s)	734, 2912
XapI	RAATTY	2 cut(s)	139, 1318
XbaI	TCTAGA	2 cut(s)	1594, 1891
XceI	RCATGY	1 cut(s)	2795
XhoI	CTCGAG	1 cut(s)	2685
XmaI	CCCGGG	1 cut(s)	251
XmaJI	CCTAGG	1 cut(s)	1240
XmiI	GTMKAC	3 cut(s)	1117, 1515, 1697
XmnI	GAANNNNTTC	2 cut(s)	196, 1075
ZrmI	AGTACT	1 cut(s)	2371
Zsp2I	ATGCAT	4 cut(s)	525, 1571, 2722, 2911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.