Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001572

Physical Location & Seq

Genomic Coordinates Reverse (-)

49705369 .. 49712655

Gene Structure 7287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2814 bp

ATGGAGGCTTTTGGAGGCAAGCCTCGGAATTTGTATGGTCCGGTGGTGCCGGATTTGAAGGCGGTTGGGAAGAAGAGTTTGGAGTGGGATTTGAATGATTGGAAATGGGACGGCCATGTTTTTACTGCCACTCCTTTGAATTCTGTGCCCTCTGATTGTAGGAGCAGGCAGTTGTTTCCGACTGGGCCGGAAACTCCATCCAATGCTGGTTCGTCCAACAGTAGTTCTTCTGGTTCGGATGATATTAGTCCGGGGAATGAGAAAGGTAAAAGAGAATTGGAGAAAAGGAGAAGGGCAGCTGTTGTAGAAAATGAAGAAATAAATGATGAAGCTGGGTCTCTTAATCTCAAGCTTGGTGGGCAGGTTTACCCAATTTTGGAAGAAGATGGAAAGACCGGGAAGAAGACGAAGATTGTTGGGGCTACTTCCAACCGCGCGGTTTGTCAGGTGGAGGACTGCAAGGCTGATCTTAGCCATGCCAAGGATTACCACCGACGGCATAAGGTCTGTGATATGCATTCCAAGGCAACCACAGCTATGGTGGGTAATAATTTGCAGCGGTTTTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGACGTTTGGCTGGCCATAATAGGAGGAGAAGAAAAACACATCCTGACACTGTTGTTAATGGAGGCTCCATGAATGATGAAAGAGGAAGCAGTTATATATTGATTACTTTGCTAAGAATACTCTCCAATATGCACTCTAATAGTTCTAATCAAACAAAGGATCAGGATCTGCTTTCTCATCTGTTGAAGAACATAGCCAATAATATTGGTACTGTTGATGGAAGGAACATATCTGCATTGCTGCAGGGATCTCAAGGTTTACTTAATGGTGGGTCTTCCGTTCAGACTGCACAGAAGGTGCCAGATATTGATTTCAATGGCAAGGAACCCAGTAGGCCTTCTGTTTCAACCTCTAAGATGGACGATTGTATTAATCTTAATGGTCATTTAAGGCCTAAAGGACAGTGTCCGACAGGACCTGCATCAGATAAGTTACTGAACAGAATATCTTCAGTTGGTGGTGATCTTGGAAGTCAAGCTCTTTCTGGTGTGCAGGCTACCAAGTCACTTTCCTCAAGAGACAGTCTTCCGTCCAAATCAGTTCCACCGGAATATGGGAGGATCCAGTTAAATGAGATCGATTTAAATAATACATATGACGATTCACAGGAGTATTTAGAGAACCTAGGGAATTCTCATGTTCCTGTAAATCCAGGGACCGAGTCTCATGGAGGTCCCTTTTGGATACAGCGTGATTCTCAAAAGTTAAGCCCACCTCAGACAAGTGGGAATTCAGACTCAGCTGCTACTCGGTCACCATCAAGTTCTAGTGGAGAAGCTCAGAGTCGCACGGATCGGATTGTCTTCAAACTATTCGGAAAAGACCCGAGTGATCTTCCATTTGGTCTGCGATCACAGGTCCTCGGCTGGTTATCCAGCACTCCTACAGACATTGAAAGCTACATAAGGCCAGGCTGTATAATTTTGACAATTTACCTCCGTCTAGAAAAATCCACATGGGAGGAGCTTTGCTGTCATCTGGGATCCAGTTTGGCAAAACTTCTAGATGCTTCCAATGATCCTTTTTGGAGAACAGGATGGGTGTATACTAGGGTGCAACATTTTGTAGCATTTGTGTACAATGGTCAGGTTGTCTTAGACACACCCTTACCTCTTAGAAGCCACAAAACATGCAGGATCTCATGCATCAAACCAATTGCTGTCTCTTTATCTGAGAGAGCTGAATTTGTAGTGAAAGGTTTTAATCTTTCTAGTTCCACTACAAGGTTACTCTGTGCTCTAGAAGGGAAGTATTTGGCCCAAGAAACTTGTCATGATTTGATGGAAGCTACTGATACAACTACTGAGCATGATGGGCTACAGTGCCTCAGATTCTCTTGCTCTATCCCAGATGCTACTGGCCGAGGATTCATTGAGGTTGAAGATCACAGTCTCAGTAGCAGCTTCTTTCCATTCATAGTTGCAGAGCAGGAAGTATGTTCAGAGATTTGCATGCTGGAGGATGCAATTGAGGCTGCCGAGGCTGCCAATGAGGTGCAGAGAGATCCTGAAATAATGGAAGCCAAGAACCAAGCCATGGACTTCATACATGAATTGGGTTGGCTCCTTCATAAAAGTCAAGTCAAGTTAAGAATTGGTCACACAGATCCCAAACTAGATCTGTTTCCTTTTCAACGGTTTAGATTACTTATGGAGTTCTCCATGGAGCATGATTGGTGTGCTGTAGTGAATAAACTCTTAGGCATTCTGTATGAAGGTACTGTTGACGCTGGTGAGCATCTTTCCATTGAGCTTGCGTTATTGGATATGGGCCTCCTCCACAGAGCTGTGCAAAGAAATTGCAAACCTATGGTGGAATTCTTGTTAAGATTTGTCCCAGATAAGGGTTTAGATAAAGCAGAGTTGGAGGAGAAGCAACAAGTTGACAGGAACAGCAACAGGTTCTTATTTAGACCTGATGTTGTTGGTCCCATGGGGTTGACTCCTCTTCATGTTGCAGCTAGTACAGATGGCTGTGAATATGTTTTGGATGCCTTAACTAATGATCCTGGAAAGGTAATTTCTTCTTATACATTGCTACATATTGATTATTTATATGTAGAAATCACAATGAGTTATTATCCAAAAACATTAAAACTGAAACCACTGCAGACTTCCGGTCTAGAAAAATGGAAGAGAAAGTACCAAACTGAAGCCGACAATTTTAATTTGTATCTTGTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

937

Amino Acids

104.13

Weight (kDa)

6.28

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	148 - 221	7.2e-30	SBP domain
Ig_SPL7	PF26102	583 - 694	8.4e-45	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47070 AT2G47070 AT3G60030
fragaria_vesca	FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420
malus_domestica	MD13G1141300.v1.1 MD13G1141400.v1.1 MD16G1137600.v1.1 MD16G1137700.v1.1
prunus_persica	Prupe.1G106500_v2.0.a1 Prupe.1G106500_v2.0.a1 Prupe.1G106600_v2.0.a1
pyrus_communis	pycom13g12280 pycom13g12290 pycom16g12140 pycom16g12150 pycom16g12160
rosa_chinensis	RchiOBHm_Chr4g0427341 RchiOBHm_Chr4g0427351
rosa_laevigata	RLG00000007250 RLG00000007251
rosa_multiflora	Rmu_sc0003813.1_g000017 Rmu_sc0003813.1_g000018
rosa_roxburghii	Rroxscaffold_5G00369020 Rroxscaffold_5G00369030
rosa_rugosa	Rorug04G0216800
rosa_samantha	Rh4AG273100 Rh4AG273300 Rh4BG278800 Rh4BG278900 Rh4CG294100 Rh4CG294200 Rh4DG276200 Rh4DG276300
rosa_wichuraiana	Rw4G023700 Rw4G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	352, 570, 1054
AccB1I	GGYRCC	2 cut(s)	46, 925
AccB7I	CCANNNNNTGG	1 cut(s)	2164
AccI	GTMKAC	2 cut(s)	628, 1673
AccII	CGCG	2 cut(s)	435, 437
AciI	CCGC	4 cut(s)	62, 433, 437, 559
AcoI	YGGCCR	3 cut(s)	112, 640, 1987
AcsI	RAATTY	6 cut(s)	28, 139, 1258, 1357, 1811, 2444
AcuI	CTGAAG	2 cut(s)	1062, 2799
AfaI	GTAC	5 cut(s)	838, 1706, 2347, 2593, 2771
AfiI	CCNNNNNNNGG	7 cut(s)	376, 481, 1181, 1851, 2164, 2470, 2471
AhdI	GACNNNNNGTC	1 cut(s)	2745
AjnI	CCWGG	3 cut(s)	1279, 1537, 2635
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
Alw21I	GWGCWC	1 cut(s)	1867
Alw26I	GTCTC	5 cut(s)	342, 1140, 1296, 1795, 2024
AlwNI	CAGNNNCTG	2 cut(s)	796, 1046
Ama87I	CYCGRG	1 cut(s)	1453
AoxI	GGCC	9 cut(s)	112, 185, 640, 962, 1019, 1535, 1884, 1987, 2398
ApeKI	GCWGC	8 cut(s)	296, 556, 868, 1370, 2028, 2102, 2111, 2585
ApoI	RAATTY	6 cut(s)	28, 139, 1258, 1357, 1811, 2444
AseI	ATTAAT	1 cut(s)	999
Asp700I	GAANNNNTTC	1 cut(s)	1075
AspA2I	CCTAGG	1 cut(s)	1252
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	9 cut(s)	38, 185, 1043, 1284, 1301, 1486, 1885, 2398, 2555
AsuC2I	CCSGG	2 cut(s)	252, 397
AsuHPI	GGTGA	3 cut(s)	1100, 1374, 2372
AvaI	CYCGRG	1 cut(s)	1453
AvaII	GGWCC	6 cut(s)	38, 1043, 1284, 1301, 1486, 2555
AvrII	CCTAGG	1 cut(s)	1252
BaeGI	GKGCMC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	642
BamHI	GGATCC	2 cut(s)	1188, 1610
BanI	GGYRCC	2 cut(s)	46, 925
BarI	GAAGNNNNNNTAC	2 cut(s)	2753, 2785
BbsI	GAAGAC	4 cut(s)	410, 894, 1145, 1423
Bbv12I	GWGCWC	1 cut(s)	1867
BbvI	GCAGC	8 cut(s)	308, 568, 855, 1357, 2040, 2089, 2098, 2597
BccI	CCATC	9 cut(s)	205, 380, 839, 979, 1393, 1659, 1903, 1934, 2591
BceAI	ACGGC	2 cut(s)	127, 512
BciT130I	CCWGG	3 cut(s)	1281, 1539, 2637
BciVI	GTATCC	1 cut(s)	1305
BcnI	CCSGG	2 cut(s)	252, 397
BcoDI	GTCTC	5 cut(s)	342, 1140, 1296, 1795, 2024
BfmI	CTRYAG	5 cut(s)	869, 1512, 1946, 2310, 2735
BfuAI	ACCTGC	3 cut(s)	352, 570, 1054
BfuI	GTATCC	1 cut(s)	1305
BglII	AGATCT	1 cut(s)	2245
BisI	GCNGC	8 cut(s)	297, 557, 869, 1371, 2029, 2103, 2112, 2586
BlnI	CCTAGG	1 cut(s)	1252
BlsI	GCNGC	8 cut(s)	298, 558, 870, 1372, 2030, 2104, 2113, 2587
Bme1390I	CCNGG	5 cut(s)	252, 397, 1281, 1539, 2637
Bme18I	GGWCC	6 cut(s)	38, 1043, 1284, 1301, 1486, 2555
BmeRI	GACNNNNNGTC	1 cut(s)	2745
BmeT110I	CYCGRG	1 cut(s)	1453
BmgT120I	GGNCC	9 cut(s)	38, 185, 1043, 1284, 1301, 1486, 1885, 2398, 2555
BmrFI	CCNGG	5 cut(s)	252, 397, 1281, 1539, 2637
BmrI	ACTGGG	2 cut(s)	192, 951
BmsI	GCATC	7 cut(s)	1058, 1624, 1782, 1969, 2080, 2374, 2608
BmuI	ACTGGG	2 cut(s)	192, 951
BpiI	GAAGAC	4 cut(s)	410, 894, 1145, 1423
BpmI	CTGGAG	1 cut(s)	2105
BpuEI	CTTGAG	3 cut(s)	332, 864, 1126
BpuMI	CCSGG	2 cut(s)	252, 397
Bsa29I	ATCGAT	1 cut(s)	1206
BsaBI	GATNNNNATC	1 cut(s)	792
BsaI	GGTCTC	1 cut(s)	342
BsaWI	WCCGGW	3 cut(s)	40, 1174, 2744
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	7 cut(s)	376, 481, 1181, 1851, 2164, 2470, 2471
Bse1I	ACTGG	5 cut(s)	187, 957, 1192, 1614, 1990
Bse3DI	GCAATG	2 cut(s)	863, 2660
Bse8I	GATNNNNATC	1 cut(s)	792
BseBI	CCWGG	3 cut(s)	1281, 1539, 2637
BseCI	ATCGAT	1 cut(s)	1206
BseGI	GGATG	6 cut(s)	197, 244, 667, 1670, 2095, 2623
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	7 cut(s)	376, 481, 1181, 1851, 2164, 2470, 2471
BseMI	GCAATG	2 cut(s)	863, 2660
BseMII	CTCAG	7 cut(s)	1358, 1380, 1421, 1791, 1923, 1969, 2035
BseNI	ACTGG	5 cut(s)	187, 957, 1192, 1614, 1990
BseRI	GAGGAG	5 cut(s)	667, 1604, 2393, 2510, 2562
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	8 cut(s)	308, 568, 855, 1357, 2040, 2089, 2098, 2597
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	3 cut(s)	900, 1139, 2144
Bsh1236I	CGCG	2 cut(s)	435, 437
BshFI	GGCC	9 cut(s)	114, 187, 642, 964, 1021, 1537, 1886, 1989, 2400
BshNI	GGYRCC	2 cut(s)	46, 925
BshVI	ATCGAT	1 cut(s)	1206
BsiHKAI	GWGCWC	1 cut(s)	1867
BsiHKCI	CYCGRG	1 cut(s)	1453
BsiSI	CCGG	7 cut(s)	41, 50, 188, 251, 396, 1175, 2745
BslFI	GGGAC	5 cut(s)	122, 1287, 1297, 2447, 2541
BslI	CCNNNNNNNGG	7 cut(s)	376, 481, 1181, 1851, 2164, 2470, 2471
BsmAI	GTCTC	5 cut(s)	342, 1140, 1296, 1795, 2024
BsmFI	GGGAC	5 cut(s)	122, 1287, 1297, 2447, 2541
BsmI	GAATGC	2 cut(s)	517, 2331
BsnI	GGCC	9 cut(s)	114, 187, 642, 964, 1021, 1537, 1886, 1989, 2400
Bso31I	GGTCTC	1 cut(s)	342
BsoBI	CYCGRG	1 cut(s)	1453
Bsp1286I	GDGCHC	2 cut(s)	150, 1867
Bsp1407I	TGTACA	1 cut(s)	1704
Bsp19I	CCATGG	3 cut(s)	2163, 2289, 2559
BspACI	CCGC	4 cut(s)	62, 433, 437, 559
BspANI	GGCC	9 cut(s)	114, 187, 642, 964, 1021, 1537, 1886, 1989, 2400
BspCNI	CTCAG	7 cut(s)	1357, 1379, 1420, 1792, 1924, 1968, 2034
BspDI	ATCGAT	1 cut(s)	1206
BspFNI	CGCG	2 cut(s)	435, 437
BspHI	TCATGA	1 cut(s)	1900
BspMAI	CTGCAG	2 cut(s)	873, 2739
BspMI	ACCTGC	3 cut(s)	352, 570, 1054
BspT107I	GGYRCC	2 cut(s)	46, 925
BspTNI	GGTCTC	1 cut(s)	342
BsrDI	GCAATG	2 cut(s)	863, 2660
BsrGI	TGTACA	1 cut(s)	1704
BsrI	ACTGG	5 cut(s)	187, 957, 1192, 1614, 1990
BssNAI	GTATAC	1 cut(s)	1674
BssT1I	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
Bst1107I	GTATAC	1 cut(s)	1674
Bst2UI	CCWGG	3 cut(s)	1281, 1539, 2637
Bst6I	CTCTTC	4 cut(s)	68, 608, 2580, 2756
BstAUI	TGTACA	1 cut(s)	1704
BstC8I	GCNNGC	6 cut(s)	20, 167, 640, 1122, 2081, 2382
BstDSI	CCRYGG	3 cut(s)	2163, 2289, 2559
BstEII	GGTNACC	1 cut(s)	1380
BstF5I	GGATG	6 cut(s)	197, 244, 667, 1670, 2095, 2623
BstFNI	CGCG	2 cut(s)	435, 437
BstHHI	GCGC	1 cut(s)	437
BstMAI	GTCTC	5 cut(s)	342, 1140, 1296, 1795, 2024
BstMWI	GCNNNNNNNGC	6 cut(s)	358, 533, 1942, 2099, 2108, 2111
BstNI	CCWGG	3 cut(s)	1281, 1539, 2637
BstNSI	RCATGY	2 cut(s)	1761, 2083
BstPI	GGTNACC	1 cut(s)	1380
BstSCI	CCNGG	5 cut(s)	250, 395, 1279, 1537, 2635
BstSFI	CTRYAG	5 cut(s)	869, 1512, 1946, 2310, 2735
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	2 cut(s)	435, 437
BstV1I	GCAGC	8 cut(s)	308, 568, 855, 1357, 2040, 2089, 2098, 2597
BstV2I	GAAGAC	4 cut(s)	410, 894, 1145, 1423
BstX2I	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2131, 2233, 2245
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstYI	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2131, 2233, 2245
BstZ17I	GTATAC	1 cut(s)	1674
Bsu15I	ATCGAT	1 cut(s)	1206
BsuI	GTATCC	1 cut(s)	1305
BsuRI	GGCC	9 cut(s)	114, 187, 642, 964, 1021, 1537, 1886, 1989, 2400
BsuTUI	ATCGAT	1 cut(s)	1206
BtgI	CCRYGG	3 cut(s)	2163, 2289, 2559
BtsCI	GGATG	6 cut(s)	197, 244, 667, 1670, 2095, 2623
BtsI	GCAGTG	1 cut(s)	2732
BtsIMutI	CAGTG	5 cut(s)	578, 675, 1037, 1955, 2732
BveI	ACCTGC	3 cut(s)	352, 570, 1054
Cac8I	GCNNGC	6 cut(s)	20, 167, 640, 1122, 2081, 2382
CaiI	CAGNNNCTG	2 cut(s)	796, 1046
CciI	TCATGA	1 cut(s)	1900
CfoI	GCGC	1 cut(s)	437
Cfr13I	GGNCC	9 cut(s)	38, 185, 1043, 1284, 1301, 1486, 1885, 2398, 2555
ClaI	ATCGAT	1 cut(s)	1206
CseI	GACGC	1 cut(s)	2363
Csp6I	GTAC	5 cut(s)	837, 1705, 2346, 2592, 2770
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviQI	GTAC	5 cut(s)	837, 1705, 2346, 2592, 2770
DraI	TTTAAA	1 cut(s)	1212
DriI	GACNNNNNGTC	1 cut(s)	2745
EaeI	YGGCCR	3 cut(s)	112, 640, 1987
Eam1104I	CTCTTC	4 cut(s)	68, 608, 2580, 2756
Eam1105I	GACNNNNNGTC	1 cut(s)	2745
EarI	CTCTTC	4 cut(s)	68, 608, 2580, 2756
Eco130I	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
Eco147I	AGGCCT	2 cut(s)	964, 1021
Eco31I	GGTCTC	1 cut(s)	342
Eco47I	GGWCC	6 cut(s)	38, 1043, 1284, 1301, 1486, 2555
Eco57I	CTGAAG	2 cut(s)	1062, 2799
Eco88I	CYCGRG	1 cut(s)	1453
Eco91I	GGTNACC	1 cut(s)	1380
EcoO109I	RGGNCCY	3 cut(s)	1043, 1301, 1486
EcoO65I	GGTNACC	1 cut(s)	1380
EcoRI	GAATTC	4 cut(s)	139, 1258, 1357, 2444
EcoRII	CCWGG	3 cut(s)	1279, 1537, 2635
EcoT14I	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
EcoT22I	ATGCAT	2 cut(s)	519, 1775
ErhI	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	5 cut(s)	122, 1287, 1297, 2447, 2541
FauNDI	CATATG	1 cut(s)	1222
FblI	GTMKAC	2 cut(s)	628, 1673
Fnu4HI	GCNGC	8 cut(s)	297, 557, 869, 1371, 2029, 2103, 2112, 2586
FokI	GGATG	6 cut(s)	184, 251, 654, 1677, 2102, 2630
Fsp4HI	GCNGC	8 cut(s)	297, 557, 869, 1371, 2029, 2103, 2112, 2586
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	8 cut(s)	297, 557, 869, 1371, 2029, 2103, 2112, 2586
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	2105
HaeIII	GGCC	9 cut(s)	114, 187, 642, 964, 1021, 1537, 1886, 1989, 2400
HapII	CCGG	7 cut(s)	41, 50, 188, 251, 396, 1175, 2745
HgaI	GACGC	1 cut(s)	2363
HhaI	GCGC	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	4 cut(s)	569, 2353, 2512, 2568
HindII	GTYRAC	4 cut(s)	569, 2353, 2512, 2568
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	8 cut(s)	1229, 1289, 1322, 1364, 1411, 1959, 1995, 2569
HpaII	CCGG	7 cut(s)	41, 50, 188, 251, 396, 1175, 2745
HphI	GGTGA	3 cut(s)	1100, 1374, 2372
Hpy166II	GTNNAC	9 cut(s)	367, 569, 629, 887, 1674, 1705, 2353, 2512, 2568
Hpy8I	GTNNAC	9 cut(s)	367, 569, 629, 887, 1674, 1705, 2353, 2512, 2568
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	9 cut(s)	52, 285, 602, 843, 916, 975, 1865, 2204, 2336
HpyCH4IV	ACGT	1 cut(s)	631
HpyF10VI	GCNNNNNNNGC	6 cut(s)	358, 533, 1942, 2099, 2108, 2111
HpySE526I	ACGT	1 cut(s)	631
HspAI	GCGC	1 cut(s)	435
LmnI	GCTCC	5 cut(s)	162, 698, 1591, 2196, 2293
Lsp1109I	GCAGC	8 cut(s)	308, 568, 855, 1357, 2040, 2089, 2098, 2597
LweI	GCATC	7 cut(s)	1058, 1624, 1782, 1969, 2080, 2374, 2608
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	5 cut(s)	1059, 1131, 1380, 1854, 2225
MfeI	CAATTG	2 cut(s)	1782, 2094
MflI	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2131, 2233, 2245
MhlI	GDGCHC	2 cut(s)	150, 1867
MlsI	TGGCCA	1 cut(s)	642
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	4 cut(s)	1298, 1358, 1420, 2563
MmeI	TCCRAC	5 cut(s)	203, 240, 453, 1061, 2472
Mox20I	TGGCCA	1 cut(s)	642
Mph1103I	ATGCAT	2 cut(s)	519, 1775
MroXI	GAANNNNTTC	1 cut(s)	1075
MscI	TGGCCA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	3 cut(s)	299, 559, 1370
MspI	CCGG	7 cut(s)	41, 50, 188, 251, 396, 1175, 2745
MspR9I	CCNGG	5 cut(s)	252, 397, 1281, 1539, 2637
MunI	CAATTG	2 cut(s)	1782, 2094
Mva1269I	GAATGC	2 cut(s)	517, 2331
MvaI	CCWGG	3 cut(s)	1281, 1539, 2637
MvnI	CGCG	2 cut(s)	435, 437
MwoI	GCNNNNNNNGC	6 cut(s)	358, 533, 1942, 2099, 2108, 2111
NciI	CCSGG	2 cut(s)	252, 397
NcoI	CCATGG	3 cut(s)	2163, 2289, 2559
NdeI	CATATG	1 cut(s)	1222
NmeAIII	GCCGAG	3 cut(s)	1470, 2015, 2131
NmuCI	GTSAC	3 cut(s)	1131, 1380, 2225
NsiI	ATGCAT	2 cut(s)	519, 1775
NspI	RCATGY	2 cut(s)	1761, 2083
PaeI	GCATGC	1 cut(s)	2083
PagI	TCATGA	1 cut(s)	1900
PceI	AGGCCT	2 cut(s)	964, 1021
PctI	GAATGC	2 cut(s)	517, 2331
PdmI	GAANNNNTTC	1 cut(s)	1075
PfeI	GAWTC	4 cut(s)	1229, 1322, 1959, 1995
PflFI	GACNNNGTC	2 cut(s)	1032, 1288
PflMI	CCANNNNNTGG	1 cut(s)	2164
PfoI	TCCNGGA	1 cut(s)	2635
PkrI	GCNGC	8 cut(s)	298, 558, 870, 1372, 2030, 2104, 2113, 2587
PleI	GAGTC	4 cut(s)	1297, 1358, 1419, 2563
PpsI	GAGTC	4 cut(s)	1297, 1358, 1419, 2563
PpuMI	RGGWCCY	3 cut(s)	1043, 1301, 1486
PshBI	ATTAAT	1 cut(s)	999
Psp5II	RGGWCCY	3 cut(s)	1043, 1301, 1486
Psp6I	CCWGG	3 cut(s)	1279, 1537, 2635
PspEI	GGTNACC	1 cut(s)	1380
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	3 cut(s)	1279, 1537, 2635
PspPI	GGNCC	9 cut(s)	38, 185, 1043, 1284, 1301, 1486, 1885, 2398, 2555
PspPPI	RGGWCCY	3 cut(s)	1043, 1301, 1486
PstI	CTGCAG	2 cut(s)	873, 2739
PstNI	CAGNNNCTG	2 cut(s)	796, 1046
PsuI	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2131, 2233, 2245
PsyI	GACNNNGTC	2 cut(s)	1032, 1288
PvuII	CAGCTG	2 cut(s)	299, 1370
RsaI	GTAC	5 cut(s)	838, 1706, 2347, 2593, 2771
RsaNI	GTAC	5 cut(s)	837, 1705, 2346, 2592, 2770
RseI	CAYNNNNRTG	1 cut(s)	536
SatI	GCNGC	8 cut(s)	297, 557, 869, 1371, 2029, 2103, 2112, 2586
Sau96I	GGNCC	9 cut(s)	38, 185, 1043, 1284, 1301, 1486, 1885, 2398, 2555
SchI	GAGTC	4 cut(s)	1298, 1358, 1420, 2563
ScrFI	CCNGG	5 cut(s)	252, 397, 1281, 1539, 2637
SduI	GDGCHC	2 cut(s)	150, 1867
SfaNI	GCATC	7 cut(s)	1058, 1624, 1782, 1969, 2080, 2374, 2608
SfcI	CTRYAG	5 cut(s)	869, 1512, 1946, 2310, 2735
SinI	GGWCC	6 cut(s)	38, 1043, 1284, 1301, 1486, 2555
SmiI	ATTTAAAT	1 cut(s)	1212
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	3 cut(s)	347, 879, 1141
SmoI	CTYRAG	3 cut(s)	347, 879, 1141
SphI	GCATGC	1 cut(s)	2083
SseBI	AGGCCT	2 cut(s)	964, 1021
SsiI	CCGC	4 cut(s)	62, 433, 437, 559
SspI	AATATT	1 cut(s)	832
StuI	AGGCCT	2 cut(s)	964, 1021
StyD4I	CCNGG	5 cut(s)	250, 395, 1279, 1537, 2635
StyI	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
SwaI	ATTTAAAT	1 cut(s)	1212
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	1 cut(s)	1206
TaqII	GACCGA	2 cut(s)	1301, 1368
TatI	WGTACW	2 cut(s)	1704, 2591
TfiI	GAWTC	4 cut(s)	1229, 1322, 1959, 1995
TscAI	CASTG	5 cut(s)	578, 682, 1037, 1955, 2739
TseFI	GTSAC	3 cut(s)	1131, 1380, 2225
TseI	GCWGC	8 cut(s)	296, 556, 868, 1370, 2028, 2102, 2111, 2585
Tsp45I	GTSAC	3 cut(s)	1131, 1380, 2225
TspGWI	ACGGA	4 cut(s)	895, 1146, 1433, 1556
TspRI	CASTG	5 cut(s)	578, 682, 1037, 1955, 2739
Tth111I	GACNNNGTC	2 cut(s)	1032, 1288
Van91I	CCANNNNNTGG	1 cut(s)	2164
VpaK11BI	GGWCC	6 cut(s)	38, 1043, 1284, 1301, 1486, 2555
VspI	ATTAAT	1 cut(s)	999
XapI	RAATTY	6 cut(s)	28, 139, 1258, 1357, 1811, 2444
XbaI	TCTAGA	4 cut(s)	1570, 1630, 1867, 2749
XceI	RCATGY	2 cut(s)	1761, 2083
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmaJI	CCTAGG	1 cut(s)	1252
XmiI	GTMKAC	2 cut(s)	628, 1673
XmnI	GAANNNNTTC	1 cut(s)	1075
Zsp2I	ATGCAT	2 cut(s)	519, 1775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.