Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001572

Physical Location & Seq

Genomic Coordinates Reverse (-)

49451189 .. 49459223

Gene Structure 8035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3054 bp

ATGGAGGGTTTTGGAGCCAAGAATCGTGGGTTTTATGGTCCGGTGGCGACGGATTTGAGGGGAGTTGGGAGGAGGAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGTGATCTTTTTGCTGCTAGTCCTTTGGATTCTGTGCTGTCTGATTGTAGGAGTAGGCAGTTGTTCCCGGCTGGGCCGGGAACTCCTTCCAATGCTGGCTTCTCTAACAGTTGTTCTTCGGGTTCTGATGATATCAGTCCCGGGAATGAGAAGGGGAAGAGAGAAGTGGAGAAAAGGAGACGGGGTGTTGTTATGGGAAATGAAGAGTTGCATGATGAAGCTAGGTCTCTTAATCTTAACCTTGGAGGGCAAGCTTACCCGATTGTTGAAGGAGAGGTAAATACTGGGAAGAAGACAAAGATAGTTGGGAATGGGACTACTTCAAATCGCTCTGTTTGTCAGGTGGAGGACTGTAGGGCTGATCTTAGCAATGCCAAGGATTATCACAGACGGCATAAGGTCTGTGTTATGCATTCTAAGGCGAGTGAAGCACTGGTGGGAAATGCTATGCAGCGGTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTAAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGAGGAGAAGAAAAACACTTCCTGACACTGCTGTTAATGCAGGCTCCTTGAACGATGAAATTGGAAGCAGTTATCTATTAATTAGTTTGCTGAGAATACTCTCCAATATGCACTCTAATAGTTCTGATCAAACGAAGGATCAGGATCTGCTATCTCACCTGTTGAAGAGCATAGCTAATCTTGCTGGTACAGTTGATGGGAGAAACATATCTGCATTACTTCAGGCATCTCAAGGTTTACCTAACACTGGGTCTTCCATCAAGACTGCACAACAGGTTCCAGATACGGTTTCCAACATCTTTGAACCCAGTAGGCCTTCTGTTTCTGCCTCAAGTATGGATGATTGTGTTATTATTGAGGAACCTTTAAGGCCCATAGGACAGTGCCCGATATTACCTGCATCAGATATGCAAAAGAGAAGATCTTCAGTTGATGGCGATCTTGGAAGTCAAATTACTTCAGGTCTACAGGCCAACAAGCCACTTCCTTCAAGAGAAAGTGCTCCAACCAATTCAGTTACACCGATCCAGTTACTTGAGATTGATTTAAATAGTCCATATGATGATTCACAGGACTATTTAGAGAACCTAGGGACTTGTCATGTCACTATAAATCCAGGGATACAACAAGATTCTCACAAGTCAAGCCCACCTCAGACCAGTGGGAATTCAGACTCAACTTTTACTCAGTCACCATCAAGTTCTAGTGGAGAATCTCAGAATCGCACAGACCGCATTGTTTTTAAACTCTTTGGAAAAGACCCGAATGAACTTCCATTTGTTCTGCGATCACAGATTATCGACTGGTTATCCCATAGTCCTACAGAGATTGAAAGCTATATAAGGCCAGGATGCATCATTTTGACAATTTACCTCCGTCTAGAAAAATCCACGTGGGAGGAGCTCTGCTGTCATCTGGGATCCAGTTTGCAAAGACTTTTAGATGCCGCCAATGATCCTTTCTGGAGAACAGGATGGGTGTATACTAGGATGCAACATTTTGTTGCGTTTATGTACAATGGTCAAGTTGTCTTAGACACAACCTTACCTCTTAAAAGTCAAAAAAGTTGCAGGATATCAAGCATTAAACCAATTGCAGTCTCTCTATCTGAGAGAGCCCAGTTTGTTGTAAAAGGCTTTAACCTTCCTCATTCCACCACAAGGTTACTATGTGCTCTAGAAGGGAAGTATCTGGCGCAAGAAGCTTGTGATGACGTGATGGATGGTGCTGATACAACTGTTGAGCATGATGAGCTACAGTGCATCAGATTCTCCTGCTCTATACCAAATGTTACTGGGCGAGGATTCATTGAGGTTGAAGATCTTGGTCTCAGTAGCAGCTTCTTTCCATTTATAGTTGCAGAGCAGGAAGTGTGTTCAGAGATTTGTATGTTGGAGGATGTGATAGAGGCTGCTGAGACTGTTGATGACATCCAGGCAGATCCTGAAATATTAGAAGCCAAGAACCAGGCTATGGACTTTATACATGAATTGGGTTGGCTTCTTCATAGAAGTCATGTTAAGTTTAGACTTGGTCACCTGGATCCCAACCTAGATTTATTTCCTTTTAGACGGTTCAAATTACTTATGGAGTTTTCCATGGATCATGACTGGTGTGCTGTAGTGAAGAAACTCTTGAAGCTTCTGTTTGACAGTACTGTTGATGCCGGAGAACATCCTTCCGTTCAGCTTGCATTATTGGATATGGCCCTCCTCCACAGAGCTGTTCGAAGAAATTGCAGACCTATGGTAGAACTGTTGTTAAGATTTGTTCCAGATAAAGGTTTAGAATCTGAACAGAAGAAATACGTTGAAGGGGAAGACAACAGTTTCTTATTTAAACCTGATGGTGTTGGTCCCCTGGGGTTGACTCCTCTTCATGTTGCAGCTAGTATTGATGGTTGTGAGCACGTATTGGATGCTTTAACTGATGATCCTGGAAAGGTGGGAATTGAAGCTTGGAAAAATGCTCGAGACAGTACAGGAATGACACCATATGATTATGCATCCATGCAAGGCCGCTACTCCTATATCAATCTTGTTCAGAGGAAAATCCGCAAGAAACTTGAGAGTGGGCATGTGGTTCTTGATATCCCCGGCACTGTGTTAGAGAGCAATAGCAAGCAGAAGCAATCAGATGGGCATAGATCATCAAAAGTAGCTAGCCTTGACACTGAAAAGTTTGAAATAAATGCATTAATACGAAGAGATTGCAAGTTATGTAGCCAGAAACTAGCTTATGGCAGCACAAGGTCACTGGTGTACAGGCCGGCAATGTTGTCAATGGTGGCCATTGCTGCCGTCTGTGTCTGTGTGGCCTTGCTCTTTAAGAGCACCCCTGAAGTTGTTTTCATCTTCCACCCCTTCCGGTGGGAGCATTTGAAGTTTGGCTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

1017

Amino Acids

112.84

Weight (kDa)

6.14

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	150 - 223	1.9e-29	SBP domain
Ig_SPL7	PF26102	571 - 682	1.7e-44	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47070 AT2G47070 AT3G60030
fragaria_vesca	FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420
malus_domestica	MD13G1141300.v1.1 MD13G1141400.v1.1 MD16G1137600.v1.1 MD16G1137700.v1.1
prunus_persica	Prupe.1G106500_v2.0.a1 Prupe.1G106500_v2.0.a1 Prupe.1G106600_v2.0.a1
pyrus_communis	pycom13g12280 pycom13g12290 pycom16g12140 pycom16g12150 pycom16g12160
rosa_chinensis	RchiOBHm_Chr4g0427341 RchiOBHm_Chr4g0427351
rosa_laevigata	RLG00000007250 RLG00000007251
rosa_multiflora	Rmu_sc0003813.1_g000017 Rmu_sc0003813.1_g000018
rosa_roxburghii	Rroxscaffold_5G00369020 Rroxscaffold_5G00369030
rosa_rugosa	Rorug04G0216800
rosa_samantha	Rh4AG273100 Rh4AG273300 Rh4BG278800 Rh4BG278900 Rh4CG294100 Rh4CG294200 Rh4DG276200 Rh4DG276300
rosa_wichuraiana	Rw4G023700 Rw4G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	576, 1060
AccB7I	CCANNNNNTGG	1 cut(s)	2128
AccI	GTMKAC	2 cut(s)	1120, 1637
AciI	CCGC	5 cut(s)	565, 1387, 1602, 2674, 2710
AcoI	YGGCCR	2 cut(s)	646, 2943
AcsI	RAATTY	1 cut(s)	1321
AcuI	CTGAAG	4 cut(s)	860, 1065, 1098, 3015
AcvI	CACGTG	1 cut(s)	1548
AfaI	GTAC	5 cut(s)	844, 1670, 2311, 2635, 2918
AfiI	CCNNNNNNNGG	5 cut(s)	902, 1815, 2128, 2435, 3024
AjiI	CACGTC	1 cut(s)	1870
AjnI	CCWGG	7 cut(s)	1270, 1501, 2088, 2121, 2193, 2514, 2590
AjuI	GAANNNNNNNTTGG	6 cut(s)	194, 226, 1598, 1630, 2596, 2628
Alw21I	GWGCWC	5 cut(s)	1159, 1560, 1831, 2565, 2990
Alw26I	GTCTC	6 cut(s)	283, 342, 1759, 1988, 2066, 2622
AlwNI	CAGNNNCTG	2 cut(s)	802, 2099
Ama87I	CYCGRG	2 cut(s)	251, 2625
ApeKI	GCWGC	7 cut(s)	125, 562, 1992, 2066, 2540, 2898, 2951
ApoI	RAATTY	1 cut(s)	1321
AseI	ATTAAT	2 cut(s)	734, 2852
Asp700I	GAANNNNTTC	2 cut(s)	196, 1078
AspA2I	CCTAGG	1 cut(s)	1243
AspLEI	GCGC	1 cut(s)	1852
AspS9I	GGNCC	5 cut(s)	38, 185, 1026, 2362, 2510
AsuC2I	CCSGG	5 cut(s)	179, 189, 252, 253, 2751
AsuHPI	GGTGA	4 cut(s)	125, 803, 1338, 2183
AsuII	TTCGAA	1 cut(s)	2383
AsuNHI	GCTAGC	1 cut(s)	2816
AvaI	CYCGRG	2 cut(s)	251, 2625
AvaII	GGWCC	2 cut(s)	38, 2510
AvrII	CCTAGG	1 cut(s)	1243
BaeGI	GKGCMC	1 cut(s)	1043
BaeI	ACNNNNGTAYC	2 cut(s)	1878, 1911
BalI	TGGCCA	2 cut(s)	648, 2945
BamHI	GGATCC	2 cut(s)	1574, 2197
BanII	GRGCYC	2 cut(s)	1560, 1774
BarI	GAAGNNNNNNTAC	2 cut(s)	1093, 1125
BbrPI	CACGTG	1 cut(s)	1548
BbsI	GAAGAC	3 cut(s)	410, 900, 2481
Bbv12I	GWGCWC	5 cut(s)	1159, 1560, 1831, 2565, 2990
BbvI	GCAGC	7 cut(s)	112, 574, 2004, 2053, 2552, 2910, 2938
BceAI	ACGGC	2 cut(s)	518, 2939
BcgI	CGANNNNNNTGC	4 cut(s)	2373, 2407, 2847, 2881
BciT130I	CCWGG	7 cut(s)	1272, 1503, 2090, 2123, 2195, 2516, 2592
BciVI	GTATCC	1 cut(s)	1269
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	5 cut(s)	179, 189, 252, 253, 2751
BcoDI	GTCTC	6 cut(s)	283, 342, 1759, 1988, 2066, 2622
BfmI	CTRYAG	5 cut(s)	463, 1121, 1476, 1910, 2274
BfuAI	ACCTGC	2 cut(s)	576, 1060
BfuI	GTATCC	1 cut(s)	1269
BglII	AGATCT	2 cut(s)	1076, 1975
BisI	GCNGC	9 cut(s)	126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952
BlnI	CCTAGG	1 cut(s)	1243
BlsI	GCNGC	9 cut(s)	127, 564, 1603, 1994, 2068, 2542, 2675, 2900, 2953
BmcAI	AGTACT	1 cut(s)	2311
Bme18I	GGWCC	2 cut(s)	38, 2510
BmeT110I	CYCGRG	2 cut(s)	251, 2625
BmgBI	CACGTC	1 cut(s)	1870
BmgT120I	GGNCC	5 cut(s)	38, 185, 1026, 2362, 2510
BmiI	GGNNCC	7 cut(s)	16, 700, 933, 1017, 1576, 2199, 2512
BmrI	ACTGGG	5 cut(s)	405, 912, 957, 1768, 1959
BmtI	GCTAGC	1 cut(s)	2820
BmuI	ACTGGG	5 cut(s)	405, 912, 957, 1768, 1959
BpiI	GAAGAC	3 cut(s)	410, 900, 2481
BpmI	CTGGAG	1 cut(s)	1639
Bpu14I	TTCGAA	1 cut(s)	2383
BpuEI	CTTGAG	5 cut(s)	870, 970, 1211, 2741, 3031
BpuMI	CCSGG	5 cut(s)	179, 189, 252, 253, 2751
BsaAI	YACGTR	2 cut(s)	1548, 2566
BsaBI	GATNNNNATC	3 cut(s)	114, 798, 1092
BsaI	GGTCTC	2 cut(s)	342, 1988
BsaJI	CCNNGG	9 cut(s)	251, 352, 486, 1243, 1271, 2253, 2514, 2515, 2749
BsaWI	WCCGGW	2 cut(s)	40, 3021
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 280, 310
Bsc4I	CCNNNNNNNGG	5 cut(s)	902, 1815, 2128, 2435, 3024
Bse118I	RCCGGY	1 cut(s)	2923
Bse3DI	GCAATG	3 cut(s)	487, 2934, 2946
Bse8I	GATNNNNATC	3 cut(s)	114, 798, 1092
BseBI	CCWGG	7 cut(s)	1272, 1503, 2090, 2123, 2195, 2516, 2592
BseDI	CCNNGG	9 cut(s)	251, 352, 486, 1243, 1271, 2253, 2514, 2515, 2749
BseJI	GATNNNNATC	3 cut(s)	114, 798, 1092
BseLI	CCNNNNNNNGG	5 cut(s)	902, 1815, 2128, 2435, 3024
BseMI	GCAATG	3 cut(s)	487, 2934, 2946
BseMII	CTCAG	7 cut(s)	737, 1322, 1355, 1385, 1755, 1999, 2061
BseRI	GAGGAG	6 cut(s)	85, 88, 673, 1568, 2357, 2517
BseSI	GKGCMC	1 cut(s)	1043
BseXI	GCAGC	7 cut(s)	112, 574, 2004, 2053, 2552, 2910, 2938
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	906
BsiHKAI	GWGCWC	5 cut(s)	1159, 1560, 1831, 2565, 2990
BsiHKCI	CYCGRG	2 cut(s)	251, 2625
BsiSI	CCGG	8 cut(s)	41, 179, 188, 252, 2322, 2751, 2924, 3022
BslFI	GGGAC	4 cut(s)	234, 439, 1261, 2496
BslI	CCNNNNNNNGG	5 cut(s)	902, 1815, 2128, 2435, 3024
BsmAI	GTCTC	6 cut(s)	283, 342, 1759, 1988, 2066, 2622
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	4 cut(s)	234, 439, 1261, 2496
BsmI	GAATGC	1 cut(s)	523
Bso31I	GGTCTC	2 cut(s)	342, 1988
BsoBI	CYCGRG	2 cut(s)	251, 2625
Bsp119I	TTCGAA	1 cut(s)	2383
Bsp1286I	GDGCHC	7 cut(s)	1043, 1159, 1560, 1774, 1831, 2565, 2990
Bsp1407I	TGTACA	2 cut(s)	1668, 2916
Bsp19I	CCATGG	1 cut(s)	2253
BspACI	CCGC	5 cut(s)	565, 1387, 1602, 2674, 2710
BspCNI	CTCAG	7 cut(s)	738, 1321, 1354, 1384, 1756, 1998, 2062
BspHI	TCATGA	1 cut(s)	2260
BspLI	GGNNCC	7 cut(s)	16, 700, 933, 1017, 1576, 2199, 2512
BspMI	ACCTGC	2 cut(s)	576, 1060
BspOI	GCTAGC	1 cut(s)	2820
BspQI	GCTCTTC	1 cut(s)	815
BspT104I	TTCGAA	1 cut(s)	2383
BspTNI	GGTCTC	2 cut(s)	342, 1988
BsrDI	GCAATG	3 cut(s)	487, 2934, 2946
BsrFI	RCCGGY	1 cut(s)	2923
BsrGI	TGTACA	2 cut(s)	1668, 2916
BssAI	RCCGGY	1 cut(s)	2923
BssECI	CCNNGG	9 cut(s)	251, 352, 486, 1243, 1271, 2253, 2514, 2515, 2749
BssNAI	GTATAC	1 cut(s)	1638
BssT1I	CCWWGG	4 cut(s)	352, 486, 1243, 2253
Bst1107I	GTATAC	1 cut(s)	1638
Bst2UI	CCWGG	7 cut(s)	1272, 1503, 2090, 2123, 2195, 2516, 2592
Bst6I	CTCTTC	6 cut(s)	263, 309, 614, 815, 2535, 2854
BstAUI	TGTACA	2 cut(s)	1668, 2916
BstBAI	YACGTR	2 cut(s)	1548, 2566
BstBI	TTCGAA	1 cut(s)	2383
BstC8I	GCNNGC	8 cut(s)	208, 363, 646, 697, 2346, 2777, 2818, 2925
BstDSI	CCRYGG	1 cut(s)	2253
BstEII	GGTNACC	1 cut(s)	2189
BstHHI	GCGC	1 cut(s)	1852
BstMAI	GTCTC	6 cut(s)	283, 342, 1759, 1988, 2066, 2622
BstMWI	GCNNNNNNNGC	7 cut(s)	539, 692, 836, 1386, 1856, 1906, 2951
BstNI	CCWGG	7 cut(s)	1272, 1503, 2090, 2123, 2195, 2516, 2592
BstNSI	RCATGY	1 cut(s)	2735
BstPI	GGTNACC	1 cut(s)	2189
BstSFI	CTRYAG	5 cut(s)	463, 1121, 1476, 1910, 2274
BstSLI	GKGCMC	1 cut(s)	1043
BstV1I	GCAGC	7 cut(s)	112, 574, 2004, 2053, 2552, 2910, 2938
BstV2I	GAAGAC	3 cut(s)	410, 900, 2481
BstX2I	RGATCY	6 cut(s)	799, 1076, 1574, 1975, 2095, 2197
BstYI	RGATCY	6 cut(s)	799, 1076, 1574, 1975, 2095, 2197
BstZ17I	GTATAC	1 cut(s)	1638
BsuI	GTATCC	1 cut(s)	1269
BtgI	CCRYGG	1 cut(s)	2253
BtrI	CACGTC	1 cut(s)	1870
BtsI	GCAGTG	1 cut(s)	681
BveI	ACCTGC	2 cut(s)	576, 1060
Cac8I	GCNNGC	8 cut(s)	208, 363, 646, 697, 2346, 2777, 2818, 2925
CaiI	CAGNNNCTG	2 cut(s)	802, 2099
CciI	TCATGA	1 cut(s)	2260
CfoI	GCGC	1 cut(s)	1852
Cfr10I	RCCGGY	1 cut(s)	2923
Cfr13I	GGNCC	5 cut(s)	38, 185, 1026, 2362, 2510
Cfr9I	CCCGGG	1 cut(s)	251
Csp6I	GTAC	5 cut(s)	843, 1669, 2310, 2634, 2917
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviQI	GTAC	5 cut(s)	843, 1669, 2310, 2634, 2917
DraI	TTTAAA	3 cut(s)	1203, 1399, 2494
EaeI	YGGCCR	2 cut(s)	646, 2943
Eam1104I	CTCTTC	6 cut(s)	263, 309, 614, 815, 2535, 2854
EarI	CTCTTC	6 cut(s)	263, 309, 614, 815, 2535, 2854
Ecl136II	GAGCTC	1 cut(s)	1558
Eco130I	CCWWGG	4 cut(s)	352, 486, 1243, 2253
Eco147I	AGGCCT	1 cut(s)	970
Eco24I	GRGCYC	2 cut(s)	1560, 1774
Eco31I	GGTCTC	2 cut(s)	342, 1988
Eco32I	GATATC	3 cut(s)	244, 1731, 2746
Eco47I	GGWCC	2 cut(s)	38, 2510
Eco53kI	GAGCTC	1 cut(s)	1558
Eco57I	CTGAAG	4 cut(s)	860, 1065, 1098, 3015
Eco72I	CACGTG	1 cut(s)	1548
Eco88I	CYCGRG	2 cut(s)	251, 2625
Eco91I	GGTNACC	1 cut(s)	2189
EcoICRI	GAGCTC	1 cut(s)	1558
EcoO65I	GGTNACC	1 cut(s)	2189
EcoRI	GAATTC	1 cut(s)	1321
EcoRII	CCWGG	7 cut(s)	1270, 1501, 2088, 2121, 2193, 2514, 2590
EcoRV	GATATC	3 cut(s)	244, 1731, 2746
EcoT14I	CCWWGG	4 cut(s)	352, 486, 1243, 2253
EcoT22I	ATGCAT	4 cut(s)	525, 1511, 2662, 2851
EcoT38I	GRGCYC	2 cut(s)	1560, 1774
ErhI	CCWWGG	4 cut(s)	352, 486, 1243, 2253
Esp3I	CGTCTC	1 cut(s)	283
FalI	AAGNNNNNCTT	2 cut(s)	2273, 2305
FaqI	GGGAC	4 cut(s)	234, 439, 1261, 2496
FauNDI	CATATG	2 cut(s)	1213, 2650
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	2 cut(s)	1120, 1637
Fnu4HI	GCNGC	9 cut(s)	126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952
FriOI	GRGCYC	2 cut(s)	1560, 1774
Fsp4HI	GCNGC	9 cut(s)	126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952
GlaI	GCGC	1 cut(s)	1851
GluI	GCNGC	9 cut(s)	126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	1639
HapII	CCGG	8 cut(s)	41, 179, 188, 252, 2322, 2751, 2924, 3022
HhaI	GCGC	1 cut(s)	1852
Hin6I	GCGC	1 cut(s)	1850
HinP1I	GCGC	1 cut(s)	1850
HincII	GTYRAC	2 cut(s)	575, 2523
HindII	GTYRAC	2 cut(s)	575, 2523
HindIII	AAGCTT	4 cut(s)	363, 1857, 2294, 2610
HpaII	CCGG	8 cut(s)	41, 179, 188, 252, 2322, 2751, 2924, 3022
HphI	GGTGA	4 cut(s)	125, 803, 1338, 2183
Hpy166II	GTNNAC	6 cut(s)	575, 893, 1121, 1638, 2523, 2917
Hpy8I	GTNNAC	6 cut(s)	575, 893, 1121, 1638, 2523, 2917
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4IV	ACGT	4 cut(s)	1547, 1869, 2463, 2565
HpyF10VI	GCNNNNNNNGC	7 cut(s)	539, 692, 836, 1386, 1856, 1906, 2951
HpySE526I	ACGT	4 cut(s)	1547, 1869, 2463, 2565
HspAI	GCGC	1 cut(s)	1850
KroI	GCCGGC	1 cut(s)	2923
KroNI	GCCGGC	1 cut(s)	2925
Ksp22I	TGATCA	1 cut(s)	781
LguI	GCTCTTC	1 cut(s)	815
LmnI	GCTCC	5 cut(s)	14, 704, 1162, 1555, 3028
Lsp1109I	GCAGC	7 cut(s)	112, 574, 2004, 2053, 2552, 2910, 2938
MaeII	ACGT	4 cut(s)	1547, 1869, 2463, 2565
MaeIII	GTNAC	8 cut(s)	1171, 1185, 1258, 1344, 1818, 1945, 2189, 2907
MfeI	CAATTG	1 cut(s)	1746
MflI	RGATCY	6 cut(s)	799, 1076, 1574, 1975, 2095, 2197
MhlI	GDGCHC	7 cut(s)	1043, 1159, 1560, 1774, 1831, 2565, 2990
MlsI	TGGCCA	2 cut(s)	648, 2945
MluNI	TGGCCA	2 cut(s)	648, 2945
MlyI	GAGTC	2 cut(s)	1322, 2518
MmeI	TCCRAC	3 cut(s)	972, 1184, 2028
Mox20I	TGGCCA	2 cut(s)	648, 2945
Mph1103I	ATGCAT	4 cut(s)	525, 1511, 2662, 2851
MroNI	GCCGGC	1 cut(s)	2923
MroXI	GAANNNNTTC	2 cut(s)	196, 1078
MscI	TGGCCA	2 cut(s)	648, 2945
Msp20I	TGGCCA	2 cut(s)	648, 2945
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	8 cut(s)	41, 179, 188, 252, 2322, 2751, 2924, 3022
MunI	CAATTG	1 cut(s)	1746
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	7 cut(s)	1272, 1503, 2090, 2123, 2195, 2516, 2592
MwoI	GCNNNNNNNGC	7 cut(s)	539, 692, 836, 1386, 1856, 1906, 2951
NaeI	GCCGGC	1 cut(s)	2925
NciI	CCSGG	5 cut(s)	179, 189, 252, 253, 2751
NcoI	CCATGG	1 cut(s)	2253
NdeI	CATATG	2 cut(s)	1213, 2650
NgoMIV	GCCGGC	1 cut(s)	2923
NheI	GCTAGC	1 cut(s)	2816
NlaIV	GGNNCC	7 cut(s)	16, 700, 933, 1017, 1576, 2199, 2512
NmuCI	GTSAC	4 cut(s)	1258, 1344, 2189, 2907
NsiI	ATGCAT	4 cut(s)	525, 1511, 2662, 2851
NspI	RCATGY	1 cut(s)	2735
NspV	TTCGAA	1 cut(s)	2383
PaeR7I	CTCGAG	1 cut(s)	2625
PagI	TCATGA	1 cut(s)	2260
PasI	CCCWGGG	1 cut(s)	2515
PceI	AGGCCT	1 cut(s)	970
PciSI	GCTCTTC	1 cut(s)	815
PctI	GAATGC	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	2925
PdmI	GAANNNNTTC	2 cut(s)	196, 1078
PfeI	GAWTC	9 cut(s)	22, 140, 1220, 1286, 1367, 1375, 1923, 1959, 2444
PflFI	GACNNNGTC	1 cut(s)	2187
PflMI	CCANNNNNTGG	1 cut(s)	2128
PfoI	TCCNGGA	1 cut(s)	2590
PkrI	GCNGC	9 cut(s)	127, 564, 1603, 1994, 2068, 2542, 2675, 2900, 2953
PleI	GAGTC	2 cut(s)	1322, 2518
PmaCI	CACGTG	1 cut(s)	1548
PmlI	CACGTG	1 cut(s)	1548
PpsI	GAGTC	2 cut(s)	1322, 2518
Ppu21I	YACGTR	2 cut(s)	1548, 2566
PshBI	ATTAAT	2 cut(s)	734, 2852
Psp124BI	GAGCTC	1 cut(s)	1560
Psp6I	CCWGG	7 cut(s)	1270, 1501, 2088, 2121, 2193, 2514, 2590
PspCI	CACGTG	1 cut(s)	1548
PspEI	GGTNACC	1 cut(s)	2189
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	7 cut(s)	1270, 1501, 2088, 2121, 2193, 2514, 2590
PspN4I	GGNNCC	7 cut(s)	16, 700, 933, 1017, 1576, 2199, 2512
PspPI	GGNCC	5 cut(s)	38, 185, 1026, 2362, 2510
PstNI	CAGNNNCTG	2 cut(s)	802, 2099
PsuI	RGATCY	6 cut(s)	799, 1076, 1574, 1975, 2095, 2197
PsyI	GACNNNGTC	1 cut(s)	2187
RsaI	GTAC	5 cut(s)	844, 1670, 2311, 2635, 2918
RsaNI	GTAC	5 cut(s)	843, 1669, 2310, 2634, 2917
SacI	GAGCTC	1 cut(s)	1560
SapI	GCTCTTC	1 cut(s)	815
SatI	GCNGC	9 cut(s)	126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952
Sau96I	GGNCC	5 cut(s)	38, 185, 1026, 2362, 2510
ScaI	AGTACT	1 cut(s)	2311
SchI	GAGTC	2 cut(s)	1322, 2518
SduI	GDGCHC	7 cut(s)	1043, 1159, 1560, 1774, 1831, 2565, 2990
SfcI	CTRYAG	5 cut(s)	463, 1121, 1476, 1910, 2274
Sfr274I	CTCGAG	1 cut(s)	2625
SfuI	TTCGAA	1 cut(s)	2383
SinI	GGWCC	2 cut(s)	38, 2510
SlaI	CTCGAG	1 cut(s)	2625
SmaI	CCCGGG	1 cut(s)	253
SmiI	ATTTAAAT	1 cut(s)	1203
SmlI	CTYRAG	6 cut(s)	885, 985, 1190, 2625, 2720, 3046
SmoI	CTYRAG	6 cut(s)	885, 985, 1190, 2625, 2720, 3046
SseBI	AGGCCT	1 cut(s)	970
SsiI	CCGC	5 cut(s)	565, 1387, 1602, 2674, 2710
SspI	AATATT	1 cut(s)	2106
SstI	GAGCTC	1 cut(s)	1560
StuI	AGGCCT	1 cut(s)	970
StyI	CCWWGG	4 cut(s)	352, 486, 1243, 2253
SwaI	ATTTAAAT	1 cut(s)	1203
TaiI	ACGT	4 cut(s)	1550, 1872, 2466, 2568
TaqI	TCGA	3 cut(s)	1455, 2383, 2626
TatI	WGTACW	4 cut(s)	1668, 2309, 2633, 2916
TauI	GCSGC	2 cut(s)	1604, 2676
TfiI	GAWTC	9 cut(s)	22, 140, 1220, 1286, 1367, 1375, 1923, 1959, 2444
TseFI	GTSAC	4 cut(s)	1258, 1344, 2189, 2907
TseI	GCWGC	7 cut(s)	125, 562, 1992, 2066, 2540, 2898, 2951
Tsp45I	GTSAC	4 cut(s)	1258, 1344, 2189, 2907
TspGWI	ACGGA	3 cut(s)	65, 1520, 2326
TspMI	CCCGGG	1 cut(s)	251
Tth111I	GACNNNGTC	1 cut(s)	2187
Van91I	CCANNNNNTGG	1 cut(s)	2128
VpaK11BI	GGWCC	2 cut(s)	38, 2510
VspI	ATTAAT	2 cut(s)	734, 2852
XapI	RAATTY	1 cut(s)	1321
XbaI	TCTAGA	2 cut(s)	1534, 1831
XceI	RCATGY	1 cut(s)	2735
XhoI	CTCGAG	1 cut(s)	2625
XmaI	CCCGGG	1 cut(s)	251
XmaJI	CCTAGG	1 cut(s)	1243
XmiI	GTMKAC	2 cut(s)	1120, 1637
XmnI	GAANNNNTTC	2 cut(s)	196, 1078
ZrmI	AGTACT	1 cut(s)	2311
Zsp2I	ATGCAT	4 cut(s)	525, 1511, 2662, 2851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.