Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001572

Physical Location & Seq

Genomic Coordinates Reverse (-)

49696862 .. 49704953

Gene Structure 8092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG276200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGACTTTGCAAATTGCAGCTAATAGTTCTGATCAAACGAAGGATCAGGATCTGCTATCTCACCTGTTGAAGAGCATAGCCAATCTTGCTGGTACAGTTGATGGGAGAAACATATCTGCATTACTTCAGGCATCTCAAGGTTTACCTAACACTGGGTCTTCCATCAAGACTGCACAACAGGTTCCAGATACGGTTTCCAACATCTTTGAACCCAGTAGGCCTTCTGTTTCTGCCTCAAGTATGGATGATTGTGTTATTATTGAGGAACCTTTAAGGCCCATAGGACAGTGCCCGATATTACCTGCATCAGATATGCAAAAGAGAAGATCTTCAGTTGATGGCGATCTTGGAAGTCAAATTACTTCAGGTCTACAGGCCAACAAGCCACTTCCTTCAAGAGAAAGTGCTCCAACCAATTCAGTTACACCGATCCAGTTACTTGAGATTGATTTAAATAGTCCATATGATGATTCACAGGACTATTTAGAGAACCTAGGGACTTGTCATGTCACTATAAATCCAGGGATACAACAAGATTCTCACAAGTCAAGCCCACCTCAGACCAGTGGGAATTCAGACTCAACTTTTACTCAGTCACCATCAAGTTCTAGTGGAGAATCTCAGAATCGCACAGACCGTATTGTTTTTAAACTCTTTGGAAAAGACCCGAATGAACTTCCATTTGTTCTGCGATCACAGATTATCGACTGGTTATCCCATAGTCCTACCGAGATTGAAAGCTATATAAGGCCAGGATGCATCATTTTGACAATTTACCTCCGTCTAGAAAAATCCACGTGGGAGGAGCTCTGCTGTCATCTGGGATCCAGTTTGCAAAGACTTTTAGATGCCGCCAATGATCCTTTCTGGAGAACAGGATGGGTGTATACTAGGATGCAACATTTTGTTGCGTTTATGTACAATGGTCAAGTTGTCTTAGACACAACCTTACCTCTTAAAAGTCAAAAAAGTTGCAGGATATCAAGCATTAAACCCATTGCAGTCTCTTTATCTGAGAGAGCCCAGTTTGTTGTAAAAGGCTTTAACCTTCCTCATTCCACCACAAGCTTACTATGTGCTCTAGAAGGGAAGTATCTGGCGCAAGAAGCTTGTGATGACGTGATGGATGGTGCTGATACAACTGTTGAGCATGATGAGCTACAGTGCATCAGATTCTCCTGCTCTATACCAAATGTTACTGGGCGAGGATTCATTGAGGTTGAAGATCTTGGTCTCAGTAGCAGCTTCTTTCCATTTATAGTTGCAGAGCAGGAAGTGTGTTCAGAGATTTGTATGTTGGAGGATGCGATAGAGGCAGCTGAGACTGTTGATGACATCCAGGCAGATCCTGAAATATTAGAAGCCAAGAACCAGGCTATGGACTTTATACATGAATTGGGTTGGCTTCTTCATAGAAGTCATGTTAAGTTTAGACTTGGTCACCTGGATCCCAACCTAGATCTATTTCCTTTTAGACGGTTCAAATTACTTATGGAGTTTTCCGTGGATCATGACTGGTGTGCTGTAGTGAAGAAACTCTTGAAGCTTCTGTTTGACAGTACTGTTGATGCCGGAGAACATCCTTCCGTTCAGCTTGCATTATTGGATATGGCCCTCCTCCACAGAGCTGTTCGAAGAAATTGCAGACCTATGGTAGAACTGTTGTTAAGATTTGTTCCAGATAAAGGTTTAGAATCTGAACAGAAGAAATACGTTGAAGGGGAAGACAACAGTTTCTTATTTAAACCTGATGGTGTTGGTCCCCTGGGGTTGACTCCTCTTCATGTTGCAGCTAGTATTGATGGTTGTGAGCACGTATTGGATGCTTTAACTGATGATCCTGGAAAGGTGGGAATTGAAGCTTGGAAAAATGCTCGAGACAGTACAGGAATGACACCATATGATTATGCATCCATGCAAGGCCGCTACTCCTATATCAATCTTGTTCAGAGGAAAATCAGCAAGAAACTTGAGAGTGGGCATGTGGTTCTTGATATCCCCGGCACTGTGTTAGAGAGCAATAGCAAGCAGAAGCAATCAGATGGGCATAGATCATCAAAAGTAGCAAGCCTTGACACCGAAAAGTTTGAAATAAATGCATTAATACGAAGAGATTGCAAGTTATGTAGCCAGAAACTAGCTTATGGCAGCACAAGGTCACTGGTGTACAGGCCGGCAATGTTGTCAATGGTGGCCATTGCTGCCGTCTGTGTCTGTGTGGCCTTGCTCTTTAAGAGCACCCCTGAAGTTGTTTTCATCTTCCACCCCTTCCGGTGGGAGCATTTGAAGTTTGGCTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

767

Amino Acids

85.0

Weight (kDa)

5.37

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_SPL7	PF26102	321 - 432	1.1e-43	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47070 AT2G47070 AT3G60030
fragaria_vesca	FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420
malus_domestica	MD13G1141300.v1.1 MD13G1141400.v1.1 MD16G1137600.v1.1 MD16G1137700.v1.1
prunus_persica	Prupe.1G106500_v2.0.a1 Prupe.1G106500_v2.0.a1 Prupe.1G106600_v2.0.a1
pyrus_communis	pycom13g12280 pycom13g12290 pycom16g12140 pycom16g12150 pycom16g12160
rosa_chinensis	RchiOBHm_Chr4g0427341 RchiOBHm_Chr4g0427351
rosa_laevigata	RLG00000007250 RLG00000007251
rosa_multiflora	Rmu_sc0003813.1_g000017 Rmu_sc0003813.1_g000018
rosa_roxburghii	Rroxscaffold_5G00369020 Rroxscaffold_5G00369030
rosa_rugosa	Rorug04G0216800
rosa_samantha	Rh4AG273100 Rh4AG273300 Rh4BG278800 Rh4BG278900 Rh4CG294100 Rh4CG294200 Rh4DG276200 Rh4DG276300
rosa_wichuraiana	Rw4G023700 Rw4G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AccB7I	CCANNNNNTGG	1 cut(s)	1378
AccI	GTMKAC	2 cut(s)	370, 887
AciI	CCGC	2 cut(s)	852, 1924
AcoI	YGGCCR	1 cut(s)	2193
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	4 cut(s)	110, 315, 348, 2265
AcvI	CACGTG	1 cut(s)	798
AfaI	GTAC	5 cut(s)	94, 920, 1561, 1885, 2168
AfiI	CCNNNNNNNGG	4 cut(s)	152, 1378, 1685, 2274
AjiI	CACGTC	1 cut(s)	1120
AjnI	CCWGG	7 cut(s)	520, 751, 1338, 1371, 1443, 1764, 1840
AjuI	GAANNNNNNNTTGG	4 cut(s)	848, 880, 1846, 1878
Alw21I	GWGCWC	5 cut(s)	409, 810, 1081, 1815, 2240
Alw26I	GTCTC	4 cut(s)	1009, 1238, 1316, 1872
AlwNI	CAGNNNCTG	2 cut(s)	52, 1349
Ama87I	CYCGRG	1 cut(s)	1875
AoxI	GGCC	9 cut(s)	218, 275, 375, 749, 1611, 1921, 2171, 2193, 2220
ApeKI	GCWGC	6 cut(s)	17, 1242, 1316, 1790, 2148, 2201
ApoI	RAATTY	1 cut(s)	571
AseI	ATTAAT	1 cut(s)	2102
Asp700I	GAANNNNTTC	1 cut(s)	328
AspA2I	CCTAGG	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	1102
AspS9I	GGNCC	3 cut(s)	276, 1612, 1760
AsuC2I	CCSGG	1 cut(s)	2001
AsuHPI	GGTGA	3 cut(s)	53, 588, 1433
AsuII	TTCGAA	1 cut(s)	1633
AvaI	CYCGRG	1 cut(s)	1875
AvaII	GGWCC	1 cut(s)	1760
AvrII	CCTAGG	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	293
BaeI	ACNNNNGTAYC	2 cut(s)	1128, 1161
BalI	TGGCCA	1 cut(s)	2195
BamHI	GGATCC	2 cut(s)	824, 1447
BanII	GRGCYC	2 cut(s)	810, 1024
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BbrPI	CACGTG	1 cut(s)	798
BbsI	GAAGAC	2 cut(s)	150, 1731
Bbv12I	GWGCWC	5 cut(s)	409, 810, 1081, 1815, 2240
BbvI	GCAGC	6 cut(s)	29, 1254, 1328, 1802, 2160, 2188
BceAI	ACGGC	1 cut(s)	2189
BcgI	CGANNNNNNTGC	4 cut(s)	1623, 1657, 2097, 2131
BciT130I	CCWGG	7 cut(s)	522, 753, 1340, 1373, 1445, 1766, 1842
BciVI	GTATCC	1 cut(s)	519
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	2001
BcoDI	GTCTC	4 cut(s)	1009, 1238, 1316, 1872
BfaI	CTAG	8 cut(s)	494, 609, 785, 891, 1082, 1457, 1794, 2138
BfmI	CTRYAG	3 cut(s)	371, 1160, 1524
BfuAI	ACCTGC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	519
BglII	AGATCT	3 cut(s)	326, 1225, 1459
BisI	GCNGC	8 cut(s)	18, 852, 1243, 1317, 1791, 1924, 2149, 2202
BlnI	CCTAGG	1 cut(s)	493
BlsI	GCNGC	8 cut(s)	19, 853, 1244, 1318, 1792, 1925, 2150, 2203
BmcAI	AGTACT	1 cut(s)	1561
Bme1390I	CCNGG	8 cut(s)	522, 753, 1340, 1373, 1445, 1766, 1842, 2001
Bme18I	GGWCC	1 cut(s)	1760
BmeT110I	CYCGRG	1 cut(s)	1875
BmgBI	CACGTC	1 cut(s)	1120
BmgT120I	GGNCC	3 cut(s)	276, 1612, 1760
BmiI	GGNNCC	5 cut(s)	183, 267, 826, 1449, 1762
BmrFI	CCNGG	8 cut(s)	522, 753, 1340, 1373, 1445, 1766, 1842, 2001
BmrI	ACTGGG	4 cut(s)	162, 207, 1018, 1209
BmuI	ACTGGG	4 cut(s)	162, 207, 1018, 1209
BpiI	GAAGAC	2 cut(s)	150, 1731
BpmI	CTGGAG	1 cut(s)	889
Bpu14I	TTCGAA	1 cut(s)	1633
BpuEI	CTTGAG	5 cut(s)	120, 220, 461, 1991, 2281
BpuMI	CCSGG	1 cut(s)	2001
BsaAI	YACGTR	2 cut(s)	798, 1816
BsaBI	GATNNNNATC	2 cut(s)	48, 342
BsaI	GGTCTC	1 cut(s)	1238
BsaJI	CCNNGG	6 cut(s)	493, 521, 1503, 1764, 1765, 1999
BsaWI	WCCGGW	1 cut(s)	2271
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 1378, 1685, 2274
Bse118I	RCCGGY	1 cut(s)	2173
Bse3DI	GCAATG	3 cut(s)	996, 2184, 2196
Bse8I	GATNNNNATC	2 cut(s)	48, 342
BseBI	CCWGG	7 cut(s)	522, 753, 1340, 1373, 1445, 1766, 1842
BseDI	CCNNGG	6 cut(s)	493, 521, 1503, 1764, 1765, 1999
BseJI	GATNNNNATC	2 cut(s)	48, 342
BseLI	CCNNNNNNNGG	4 cut(s)	152, 1378, 1685, 2274
BseMI	GCAATG	3 cut(s)	996, 2184, 2196
BseMII	CTCAG	6 cut(s)	572, 605, 635, 1005, 1249, 1311
BseRI	GAGGAG	3 cut(s)	818, 1607, 1767
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	6 cut(s)	29, 1254, 1328, 1802, 2160, 2188
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	9 cut(s)	220, 277, 377, 751, 1613, 1923, 2173, 2195, 2222
BsiHKAI	GWGCWC	5 cut(s)	409, 810, 1081, 1815, 2240
BsiHKCI	CYCGRG	1 cut(s)	1875
BsiSI	CCGG	4 cut(s)	1572, 2001, 2174, 2272
BslFI	GGGAC	2 cut(s)	511, 1746
BslI	CCNNNNNNNGG	4 cut(s)	152, 1378, 1685, 2274
BsmAI	GTCTC	4 cut(s)	1009, 1238, 1316, 1872
BsmFI	GGGAC	2 cut(s)	511, 1746
BsnI	GGCC	9 cut(s)	220, 277, 377, 751, 1613, 1923, 2173, 2195, 2222
Bso31I	GGTCTC	1 cut(s)	1238
BsoBI	CYCGRG	1 cut(s)	1875
Bsp119I	TTCGAA	1 cut(s)	1633
Bsp1286I	GDGCHC	7 cut(s)	293, 409, 810, 1024, 1081, 1815, 2240
Bsp1407I	TGTACA	2 cut(s)	918, 2166
BspACI	CCGC	2 cut(s)	852, 1924
BspANI	GGCC	9 cut(s)	220, 277, 377, 751, 1613, 1923, 2173, 2195, 2222
BspCNI	CTCAG	6 cut(s)	571, 604, 634, 1006, 1248, 1312
BspHI	TCATGA	1 cut(s)	1510
BspLI	GGNNCC	5 cut(s)	183, 267, 826, 1449, 1762
BspMI	ACCTGC	1 cut(s)	310
BspQI	GCTCTTC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	1633
BspTNI	GGTCTC	1 cut(s)	1238
BsrDI	GCAATG	3 cut(s)	996, 2184, 2196
BsrFI	RCCGGY	1 cut(s)	2173
BsrGI	TGTACA	2 cut(s)	918, 2166
BssAI	RCCGGY	1 cut(s)	2173
BssECI	CCNNGG	6 cut(s)	493, 521, 1503, 1764, 1765, 1999
BssNAI	GTATAC	1 cut(s)	888
BssT1I	CCWWGG	1 cut(s)	493
Bst1107I	GTATAC	1 cut(s)	888
Bst2UI	CCWGG	7 cut(s)	522, 753, 1340, 1373, 1445, 1766, 1842
Bst6I	CTCTTC	3 cut(s)	65, 1785, 2104
BstAUI	TGTACA	2 cut(s)	918, 2166
BstBAI	YACGTR	2 cut(s)	798, 1816
BstBI	TTCGAA	1 cut(s)	1633
BstC8I	GCNNGC	4 cut(s)	1596, 2027, 2068, 2175
BstDEI	CTNAG	7 cut(s)	558, 591, 621, 937, 1014, 1235, 1320
BstDSI	CCRYGG	1 cut(s)	1503
BstEII	GGTNACC	1 cut(s)	1439
BstHHI	GCGC	1 cut(s)	1102
BstMAI	GTCTC	4 cut(s)	1009, 1238, 1316, 1872
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 1106, 1156, 1313, 2201
BstNI	CCWGG	7 cut(s)	522, 753, 1340, 1373, 1445, 1766, 1842
BstNSI	RCATGY	1 cut(s)	1985
BstPI	GGTNACC	1 cut(s)	1439
BstSCI	CCNGG	8 cut(s)	520, 751, 1338, 1371, 1443, 1764, 1840, 1999
BstSFI	CTRYAG	3 cut(s)	371, 1160, 1524
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	6 cut(s)	29, 1254, 1328, 1802, 2160, 2188
BstV2I	GAAGAC	2 cut(s)	150, 1731
BstX2I	RGATCY	7 cut(s)	49, 326, 824, 1225, 1345, 1447, 1459
BstYI	RGATCY	7 cut(s)	49, 326, 824, 1225, 1345, 1447, 1459
BstZ17I	GTATAC	1 cut(s)	888
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	9 cut(s)	220, 277, 377, 751, 1613, 1923, 2173, 2195, 2222
BtgI	CCRYGG	1 cut(s)	1503
BtrI	CACGTC	1 cut(s)	1120
BtsIMutI	CAGTG	6 cut(s)	150, 293, 571, 1169, 2004, 2159
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	4 cut(s)	1596, 2027, 2068, 2175
CaiI	CAGNNNCTG	2 cut(s)	52, 1349
CciI	TCATGA	1 cut(s)	1510
CfoI	GCGC	1 cut(s)	1102
Cfr10I	RCCGGY	1 cut(s)	2173
Cfr13I	GGNCC	3 cut(s)	276, 1612, 1760
Csp6I	GTAC	5 cut(s)	93, 919, 1560, 1884, 2167
CviAII	CATG	8 cut(s)	506, 1151, 1391, 1421, 1511, 1784, 1915, 1982
CviQI	GTAC	5 cut(s)	93, 919, 1560, 1884, 2167
DdeI	CTNAG	7 cut(s)	558, 591, 621, 937, 1014, 1235, 1320
DraI	TTTAAA	3 cut(s)	453, 649, 1744
EaeI	YGGCCR	1 cut(s)	2193
Eam1104I	CTCTTC	3 cut(s)	65, 1785, 2104
EarI	CTCTTC	3 cut(s)	65, 1785, 2104
Ecl136II	GAGCTC	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	493
Eco147I	AGGCCT	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	810, 1024
Eco31I	GGTCTC	1 cut(s)	1238
Eco32I	GATATC	2 cut(s)	981, 1996
Eco47I	GGWCC	1 cut(s)	1760
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	4 cut(s)	110, 315, 348, 2265
Eco72I	CACGTG	1 cut(s)	798
Eco88I	CYCGRG	1 cut(s)	1875
Eco91I	GGTNACC	1 cut(s)	1439
EcoICRI	GAGCTC	1 cut(s)	808
EcoO65I	GGTNACC	1 cut(s)	1439
EcoRI	GAATTC	1 cut(s)	571
EcoRII	CCWGG	7 cut(s)	520, 751, 1338, 1371, 1443, 1764, 1840
EcoRV	GATATC	2 cut(s)	981, 1996
EcoT14I	CCWWGG	1 cut(s)	493
EcoT22I	ATGCAT	3 cut(s)	761, 1912, 2101
EcoT38I	GRGCYC	2 cut(s)	810, 1024
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	8 cut(s)	509, 1154, 1394, 1424, 1514, 1787, 1918, 1985
FalI	AAGNNNNNCTT	2 cut(s)	1523, 1555
FaqI	GGGAC	2 cut(s)	511, 1746
FatI	CATG	8 cut(s)	505, 1150, 1390, 1420, 1510, 1783, 1914, 1981
FauNDI	CATATG	2 cut(s)	463, 1900
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	2 cut(s)	370, 887
Fnu4HI	GCNGC	8 cut(s)	18, 852, 1243, 1317, 1791, 1924, 2149, 2202
FriOI	GRGCYC	2 cut(s)	810, 1024
Fsp4HI	GCNGC	8 cut(s)	18, 852, 1243, 1317, 1791, 1924, 2149, 2202
FspBI	CTAG	8 cut(s)	494, 609, 785, 891, 1082, 1457, 1794, 2138
GlaI	GCGC	1 cut(s)	1101
GluI	GCNGC	8 cut(s)	18, 852, 1243, 1317, 1791, 1924, 2149, 2202
GsuI	CTGGAG	1 cut(s)	889
HaeIII	GGCC	9 cut(s)	220, 277, 377, 751, 1613, 1923, 2173, 2195, 2222
HapII	CCGG	4 cut(s)	1572, 2001, 2174, 2272
HhaI	GCGC	1 cut(s)	1102
Hin1II	CATG	8 cut(s)	509, 1154, 1394, 1424, 1514, 1787, 1918, 1985
Hin6I	GCGC	1 cut(s)	1100
HinP1I	GCGC	1 cut(s)	1100
HincII	GTYRAC	1 cut(s)	1773
HindII	GTYRAC	1 cut(s)	1773
HindIII	AAGCTT	4 cut(s)	1066, 1107, 1544, 1860
HinfI	GANTC	9 cut(s)	470, 536, 578, 617, 625, 1173, 1209, 1694, 1774
HpaII	CCGG	4 cut(s)	1572, 2001, 2174, 2272
HphI	GGTGA	3 cut(s)	53, 588, 1433
Hpy166II	GTNNAC	5 cut(s)	143, 371, 888, 1773, 2167
Hpy8I	GTNNAC	5 cut(s)	143, 371, 888, 1773, 2167
HpyAV	CCTTC	8 cut(s)	34, 231, 402, 1058, 1079, 1593, 1712, 2278
HpyCH4IV	ACGT	4 cut(s)	797, 1119, 1713, 1815
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 1106, 1156, 1313, 2201
HpyF3I	CTNAG	7 cut(s)	558, 591, 621, 937, 1014, 1235, 1320
HpySE526I	ACGT	4 cut(s)	797, 1119, 1713, 1815
Hsp92II	CATG	8 cut(s)	509, 1154, 1394, 1424, 1514, 1787, 1918, 1985
HspAI	GCGC	1 cut(s)	1100
KroI	GCCGGC	1 cut(s)	2173
KroNI	GCCGGC	1 cut(s)	2175
Ksp22I	TGATCA	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	3 cut(s)	412, 805, 2278
Lsp1109I	GCAGC	6 cut(s)	29, 1254, 1328, 1802, 2160, 2188
MaeI	CTAG	8 cut(s)	494, 609, 785, 891, 1082, 1457, 1794, 2138
MaeII	ACGT	4 cut(s)	797, 1119, 1713, 1815
MaeIII	GTNAC	7 cut(s)	421, 435, 508, 594, 1195, 1439, 2157
MflI	RGATCY	7 cut(s)	49, 326, 824, 1225, 1345, 1447, 1459
MhlI	GDGCHC	7 cut(s)	293, 409, 810, 1024, 1081, 1815, 2240
MlsI	TGGCCA	1 cut(s)	2195
MluCI	AATT	9 cut(s)	12, 357, 415, 571, 771, 1394, 1484, 1639, 1854
MluNI	TGGCCA	1 cut(s)	2195
MlyI	GAGTC	2 cut(s)	572, 1768
MmeI	TCCRAC	3 cut(s)	222, 434, 1278
Mox20I	TGGCCA	1 cut(s)	2195
Mph1103I	ATGCAT	3 cut(s)	761, 1912, 2101
MroNI	GCCGGC	1 cut(s)	2173
MroXI	GAANNNNTTC	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	2195
Msp20I	TGGCCA	1 cut(s)	2195
MspA1I	CMGCKG	1 cut(s)	1319
MspI	CCGG	4 cut(s)	1572, 2001, 2174, 2272
MspR9I	CCNGG	8 cut(s)	522, 753, 1340, 1373, 1445, 1766, 1842, 2001
MvaI	CCWGG	7 cut(s)	522, 753, 1340, 1373, 1445, 1766, 1842
MwoI	GCNNNNNNNGC	5 cut(s)	86, 1106, 1156, 1313, 2201
NaeI	GCCGGC	1 cut(s)	2175
NciI	CCSGG	1 cut(s)	2001
NdeI	CATATG	2 cut(s)	463, 1900
NgoMIV	GCCGGC	1 cut(s)	2173
NlaIII	CATG	8 cut(s)	509, 1154, 1394, 1424, 1514, 1787, 1918, 1985
NlaIV	GGNNCC	5 cut(s)	183, 267, 826, 1449, 1762
NmuCI	GTSAC	4 cut(s)	508, 594, 1439, 2157
NsiI	ATGCAT	3 cut(s)	761, 1912, 2101
NspI	RCATGY	1 cut(s)	1985
NspV	TTCGAA	1 cut(s)	1633
PaeR7I	CTCGAG	1 cut(s)	1875
PagI	TCATGA	1 cut(s)	1510
PasI	CCCWGGG	1 cut(s)	1765
PceI	AGGCCT	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	634
PdiI	GCCGGC	1 cut(s)	2175
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	7 cut(s)	470, 536, 617, 625, 1173, 1209, 1694
PflFI	GACNNNGTC	1 cut(s)	1437
PflMI	CCANNNNNTGG	1 cut(s)	1378
PfoI	TCCNGGA	1 cut(s)	1840
PkrI	GCNGC	8 cut(s)	19, 853, 1244, 1318, 1792, 1925, 2150, 2203
PleI	GAGTC	2 cut(s)	572, 1768
PmaCI	CACGTG	1 cut(s)	798
PmlI	CACGTG	1 cut(s)	798
PpsI	GAGTC	2 cut(s)	572, 1768
Ppu21I	YACGTR	2 cut(s)	798, 1816
PshBI	ATTAAT	1 cut(s)	2102
Psp124BI	GAGCTC	1 cut(s)	810
Psp6I	CCWGG	7 cut(s)	520, 751, 1338, 1371, 1443, 1764, 1840
PspCI	CACGTG	1 cut(s)	798
PspEI	GGTNACC	1 cut(s)	1439
PspGI	CCWGG	7 cut(s)	520, 751, 1338, 1371, 1443, 1764, 1840
PspN4I	GGNNCC	5 cut(s)	183, 267, 826, 1449, 1762
PspPI	GGNCC	3 cut(s)	276, 1612, 1760
PstNI	CAGNNNCTG	2 cut(s)	52, 1349
PsuI	RGATCY	7 cut(s)	49, 326, 824, 1225, 1345, 1447, 1459
PsyI	GACNNNGTC	1 cut(s)	1437
PvuII	CAGCTG	1 cut(s)	1319
RsaI	GTAC	5 cut(s)	94, 920, 1561, 1885, 2168
RsaNI	GTAC	5 cut(s)	93, 919, 1560, 1884, 2167
SacI	GAGCTC	1 cut(s)	810
SapI	GCTCTTC	1 cut(s)	65
SatI	GCNGC	8 cut(s)	18, 852, 1243, 1317, 1791, 1924, 2149, 2202
Sau96I	GGNCC	3 cut(s)	276, 1612, 1760
ScaI	AGTACT	1 cut(s)	1561
SchI	GAGTC	2 cut(s)	572, 1768
ScrFI	CCNGG	8 cut(s)	522, 753, 1340, 1373, 1445, 1766, 1842, 2001
SduI	GDGCHC	7 cut(s)	293, 409, 810, 1024, 1081, 1815, 2240
SfcI	CTRYAG	3 cut(s)	371, 1160, 1524
Sfr274I	CTCGAG	1 cut(s)	1875
SfuI	TTCGAA	1 cut(s)	1633
SinI	GGWCC	1 cut(s)	1760
SlaI	CTCGAG	1 cut(s)	1875
SmiI	ATTTAAAT	1 cut(s)	453
SmlI	CTYRAG	6 cut(s)	135, 235, 440, 1875, 1970, 2296
SmoI	CTYRAG	6 cut(s)	135, 235, 440, 1875, 1970, 2296
Sse9I	AATT	9 cut(s)	12, 357, 415, 571, 771, 1394, 1484, 1639, 1854
SseBI	AGGCCT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	852, 1924
SspI	AATATT	1 cut(s)	1356
SspMI	CTAG	8 cut(s)	494, 609, 785, 891, 1082, 1457, 1794, 2138
SstI	GAGCTC	1 cut(s)	810
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	8 cut(s)	520, 751, 1338, 1371, 1443, 1764, 1840, 1999
StyI	CCWWGG	1 cut(s)	493
SwaI	ATTTAAAT	1 cut(s)	453
TaiI	ACGT	4 cut(s)	800, 1122, 1716, 1818
TaqI	TCGA	3 cut(s)	705, 1633, 1876
TasI	AATT	9 cut(s)	12, 357, 415, 571, 771, 1394, 1484, 1639, 1854
TatI	WGTACW	4 cut(s)	918, 1559, 1883, 2166
TauI	GCSGC	2 cut(s)	854, 1926
TfiI	GAWTC	7 cut(s)	470, 536, 617, 625, 1173, 1209, 1694
TscAI	CASTG	6 cut(s)	157, 293, 571, 1169, 2011, 2166
TseFI	GTSAC	4 cut(s)	508, 594, 1439, 2157
TseI	GCWGC	6 cut(s)	17, 1242, 1316, 1790, 2148, 2201
Tsp45I	GTSAC	4 cut(s)	508, 594, 1439, 2157
TspDTI	ATGAA	6 cut(s)	687, 1201, 1400, 1407, 1772, 2245
TspGWI	ACGGA	3 cut(s)	770, 1492, 1576
TspRI	CASTG	6 cut(s)	157, 293, 571, 1169, 2011, 2166
Tth111I	GACNNNGTC	1 cut(s)	1437
Van91I	CCANNNNNTGG	1 cut(s)	1378
VpaK11BI	GGWCC	1 cut(s)	1760
VspI	ATTAAT	1 cut(s)	2102
XapI	RAATTY	1 cut(s)	571
XbaI	TCTAGA	2 cut(s)	784, 1081
XceI	RCATGY	1 cut(s)	1985
XhoI	CTCGAG	1 cut(s)	1875
XmaJI	CCTAGG	1 cut(s)	493
XmiI	GTMKAC	2 cut(s)	370, 887
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	8 cut(s)	494, 609, 785, 891, 1082, 1457, 1794, 2138
ZrmI	AGTACT	1 cut(s)	1561
Zsp2I	ATGCAT	3 cut(s)	761, 1912, 2101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.