Squamosa promoter-binding-like protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47070 AT2G47070 AT3G60030 |
| fragaria_vesca | FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 |
| malus_domestica | MD13G1141300.v1.1 MD13G1141400.v1.1 MD16G1137600.v1.1 MD16G1137700.v1.1 |
| prunus_persica | Prupe.1G106500_v2.0.a1 Prupe.1G106500_v2.0.a1 Prupe.1G106600_v2.0.a1 |
| pyrus_communis | pycom13g12280 pycom13g12290 pycom16g12140 pycom16g12150 pycom16g12160 |
| rosa_chinensis | RchiOBHm_Chr4g0427341 RchiOBHm_Chr4g0427351 |
| rosa_laevigata | RLG00000007250 RLG00000007251 |
| rosa_multiflora | Rmu_sc0003813.1_g000017 Rmu_sc0003813.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00369020 Rroxscaffold_5G00369030 |
| rosa_rugosa | Rorug04G0216800 |
| rosa_samantha | Rh4AG273100 Rh4AG273300 Rh4BG278800 Rh4BG278900 Rh4CG294100 Rh4CG294200 Rh4DG276200 Rh4DG276300 |
| rosa_wichuraiana | Rw4G023700 Rw4G023710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 576, 1060 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2128 |
| AccI | GTMKAC | 2 cut(s) | 1120, 1637 |
| AciI | CCGC | 4 cut(s) | 565, 1387, 1602, 2674 |
| AcoI | YGGCCR | 2 cut(s) | 646, 2943 |
| AcsI | RAATTY | 2 cut(s) | 139, 1321 |
| AcuI | CTGAAG | 4 cut(s) | 860, 1065, 1098, 3015 |
| AcvI | CACGTG | 1 cut(s) | 1548 |
| AcyI | GRCGYC | 1 cut(s) | 2319 |
| AfaI | GTAC | 5 cut(s) | 844, 1670, 2311, 2635, 2918 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1815, 2128, 2435, 2755, 3024 |
| AjiI | CACGTC | 1 cut(s) | 1870 |
| AjnI | CCWGG | 7 cut(s) | 1270, 1501, 2088, 2121, 2193, 2514, 2590 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 62, 94, 1598, 1630, 2596, 2628 |
| Alw21I | GWGCWC | 5 cut(s) | 1159, 1560, 1831, 2565, 2990 |
| Alw26I | GTCTC | 7 cut(s) | 283, 342, 1232, 1759, 1988, 2066, 2622 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 802, 2099 |
| Ama87I | CYCGRG | 2 cut(s) | 251, 2625 |
| ApeKI | GCWGC | 7 cut(s) | 125, 562, 1992, 2066, 2540, 2898, 2951 |
| ApoI | RAATTY | 2 cut(s) | 139, 1321 |
| AseI | ATTAAT | 2 cut(s) | 734, 2852 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 196, 1078 |
| AspA2I | CCTAGG | 1 cut(s) | 1243 |
| AspLEI | GCGC | 3 cut(s) | 1041, 1663, 1852 |
| AspS9I | GGNCC | 5 cut(s) | 38, 185, 1026, 2362, 2510 |
| AsuC2I | CCSGG | 5 cut(s) | 179, 189, 252, 253, 2751 |
| AsuHPI | GGTGA | 5 cut(s) | 125, 803, 1103, 1338, 2183 |
| AsuII | TTCGAA | 1 cut(s) | 2383 |
| AsuNHI | GCTAGC | 1 cut(s) | 2816 |
| AvaI | CYCGRG | 2 cut(s) | 251, 2625 |
| AvaII | GGWCC | 2 cut(s) | 38, 2510 |
| AvrII | CCTAGG | 1 cut(s) | 1243 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1878, 1911 |
| BalI | TGGCCA | 2 cut(s) | 648, 2945 |
| BamHI | GGATCC | 2 cut(s) | 1574, 2197 |
| BanII | GRGCYC | 2 cut(s) | 1560, 1774 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1093, 1125 |
| BbrPI | CACGTG | 1 cut(s) | 1548 |
| BbsI | GAAGAC | 3 cut(s) | 410, 900, 2481 |
| Bbv12I | GWGCWC | 5 cut(s) | 1159, 1560, 1831, 2565, 2990 |
| BbvI | GCAGC | 7 cut(s) | 112, 574, 2004, 2078, 2552, 2910, 2938 |
| BceAI | ACGGC | 2 cut(s) | 518, 2939 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2373, 2407, 2847, 2881 |
| BciT130I | CCWGG | 7 cut(s) | 1272, 1503, 2090, 2123, 2195, 2516, 2592 |
| BciVI | GTATCC | 1 cut(s) | 1269 |
| BclI | TGATCA | 1 cut(s) | 781 |
| BcnI | CCSGG | 5 cut(s) | 179, 189, 252, 253, 2751 |
| BcoDI | GTCTC | 7 cut(s) | 283, 342, 1232, 1759, 1988, 2066, 2622 |
| BfmI | CTRYAG | 4 cut(s) | 463, 1121, 1476, 2274 |
| BfoI | RGCGCY | 1 cut(s) | 1042 |
| BfuAI | ACCTGC | 2 cut(s) | 576, 1060 |
| BfuI | GTATCC | 1 cut(s) | 1269 |
| BglII | AGATCT | 3 cut(s) | 1076, 1975, 2209 |
| BisI | GCNGC | 9 cut(s) | 126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952 |
| BlnI | CCTAGG | 1 cut(s) | 1243 |
| BlsI | GCNGC | 9 cut(s) | 127, 564, 1603, 1994, 2068, 2542, 2675, 2900, 2953 |
| BmcAI | AGTACT | 1 cut(s) | 2311 |
| Bme18I | GGWCC | 2 cut(s) | 38, 2510 |
| BmeT110I | CYCGRG | 2 cut(s) | 251, 2625 |
| BmgBI | CACGTC | 1 cut(s) | 1870 |
| BmgT120I | GGNCC | 5 cut(s) | 38, 185, 1026, 2362, 2510 |
| BmiI | GGNNCC | 7 cut(s) | 16, 235, 700, 1017, 1576, 2199, 2512 |
| BmrI | ACTGGG | 4 cut(s) | 405, 912, 1768, 1959 |
| BmtI | GCTAGC | 1 cut(s) | 2820 |
| BmuI | ACTGGG | 4 cut(s) | 405, 912, 1768, 1959 |
| BpiI | GAAGAC | 3 cut(s) | 410, 900, 2481 |
| BpmI | CTGGAG | 1 cut(s) | 1639 |
| Bpu14I | TTCGAA | 1 cut(s) | 2383 |
| BpuEI | CTTGAG | 5 cut(s) | 870, 970, 1211, 2741, 3031 |
| BpuMI | CCSGG | 5 cut(s) | 179, 189, 252, 253, 2751 |
| BsaAI | YACGTR | 2 cut(s) | 1548, 2566 |
| BsaBI | GATNNNNATC | 3 cut(s) | 114, 798, 1092 |
| BsaHI | GRCGYC | 1 cut(s) | 2319 |
| BsaI | GGTCTC | 3 cut(s) | 342, 1232, 1988 |
| BsaWI | WCCGGW | 2 cut(s) | 40, 3021 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 280, 310 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1815, 2128, 2435, 2755, 3024 |
| Bse118I | RCCGGY | 1 cut(s) | 2923 |
| Bse3DI | GCAATG | 4 cut(s) | 201, 487, 2934, 2946 |
| Bse8I | GATNNNNATC | 3 cut(s) | 114, 798, 1092 |
| BseBI | CCWGG | 7 cut(s) | 1272, 1503, 2090, 2123, 2195, 2516, 2592 |
| BseJI | GATNNNNATC | 3 cut(s) | 114, 798, 1092 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1815, 2128, 2435, 2755, 3024 |
| BseMI | GCAATG | 4 cut(s) | 201, 487, 2934, 2946 |
| BseMII | CTCAG | 7 cut(s) | 737, 1322, 1355, 1385, 1755, 1999, 2061 |
| BseRI | GAGGAG | 5 cut(s) | 88, 673, 1568, 2357, 2517 |
| BseXI | GCAGC | 7 cut(s) | 112, 574, 2004, 2078, 2552, 2910, 2938 |
| BseYI | CCCAGC | 1 cut(s) | 182 |
| BsgI | GTGCAG | 1 cut(s) | 906 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1159, 1560, 1831, 2565, 2990 |
| BsiHKCI | CYCGRG | 2 cut(s) | 251, 2625 |
| BsiSI | CCGG | 8 cut(s) | 41, 179, 188, 252, 2322, 2751, 2924, 3022 |
| BslFI | GGGAC | 4 cut(s) | 234, 439, 1261, 2496 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1815, 2128, 2435, 2755, 3024 |
| BsmAI | GTCTC | 7 cut(s) | 283, 342, 1232, 1759, 1988, 2066, 2622 |
| BsmBI | CGTCTC | 1 cut(s) | 283 |
| BsmFI | GGGAC | 4 cut(s) | 234, 439, 1261, 2496 |
| BsmI | GAATGC | 1 cut(s) | 523 |
| Bso31I | GGTCTC | 3 cut(s) | 342, 1232, 1988 |
| BsoBI | CYCGRG | 2 cut(s) | 251, 2625 |
| Bsp119I | TTCGAA | 1 cut(s) | 2383 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1159, 1560, 1774, 1831, 2565, 2990 |
| Bsp1407I | TGTACA | 2 cut(s) | 1668, 2916 |
| BspACI | CCGC | 4 cut(s) | 565, 1387, 1602, 2674 |
| BspCNI | CTCAG | 7 cut(s) | 738, 1321, 1354, 1384, 1756, 1998, 2062 |
| BspHI | TCATGA | 1 cut(s) | 2260 |
| BspLI | GGNNCC | 7 cut(s) | 16, 235, 700, 1017, 1576, 2199, 2512 |
| BspMI | ACCTGC | 2 cut(s) | 576, 1060 |
| BspOI | GCTAGC | 1 cut(s) | 2820 |
| BspQI | GCTCTTC | 1 cut(s) | 815 |
| BspT104I | TTCGAA | 1 cut(s) | 2383 |
| BspTNI | GGTCTC | 3 cut(s) | 342, 1232, 1988 |
| BsrDI | GCAATG | 4 cut(s) | 201, 487, 2934, 2946 |
| BsrFI | RCCGGY | 1 cut(s) | 2923 |
| BsrGI | TGTACA | 2 cut(s) | 1668, 2916 |
| BssAI | RCCGGY | 1 cut(s) | 2923 |
| BssNAI | GTATAC | 1 cut(s) | 1638 |
| BssNI | GRCGYC | 1 cut(s) | 2319 |
| BssT1I | CCWWGG | 3 cut(s) | 352, 486, 1243 |
| Bst1107I | GTATAC | 1 cut(s) | 1638 |
| Bst2UI | CCWGG | 7 cut(s) | 1272, 1503, 2090, 2123, 2195, 2516, 2592 |
| Bst6I | CTCTTC | 7 cut(s) | 65, 263, 309, 614, 815, 2535, 2854 |
| BstACI | GRCGYC | 1 cut(s) | 2319 |
| BstAUI | TGTACA | 2 cut(s) | 1668, 2916 |
| BstBAI | YACGTR | 2 cut(s) | 1548, 2566 |
| BstBI | TTCGAA | 1 cut(s) | 2383 |
| BstC8I | GCNNGC | 8 cut(s) | 208, 363, 646, 697, 2346, 2777, 2818, 2925 |
| BstDSI | CCRYGG | 2 cut(s) | 25, 2253 |
| BstEII | GGTNACC | 1 cut(s) | 2189 |
| BstH2I | RGCGCY | 1 cut(s) | 1042 |
| BstHHI | GCGC | 3 cut(s) | 1041, 1663, 1852 |
| BstMAI | GTCTC | 7 cut(s) | 283, 342, 1232, 1759, 1988, 2066, 2622 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 539, 692, 836, 1386, 1856, 1906, 2063, 2951 |
| BstNI | CCWGG | 7 cut(s) | 1272, 1503, 2090, 2123, 2195, 2516, 2592 |
| BstNSI | RCATGY | 1 cut(s) | 2735 |
| BstPI | GGTNACC | 1 cut(s) | 2189 |
| BstSFI | CTRYAG | 4 cut(s) | 463, 1121, 1476, 2274 |
| BstV1I | GCAGC | 7 cut(s) | 112, 574, 2004, 2078, 2552, 2910, 2938 |
| BstV2I | GAAGAC | 3 cut(s) | 410, 900, 2481 |
| BstX2I | RGATCY | 7 cut(s) | 799, 1076, 1574, 1975, 2095, 2197, 2209 |
| BstYI | RGATCY | 7 cut(s) | 799, 1076, 1574, 1975, 2095, 2197, 2209 |
| BstZ17I | GTATAC | 1 cut(s) | 1638 |
| BsuI | GTATCC | 1 cut(s) | 1269 |
| BtgI | CCRYGG | 2 cut(s) | 25, 2253 |
| BtrI | CACGTC | 1 cut(s) | 1870 |
| BtsI | GCAGTG | 1 cut(s) | 681 |
| BtsIMutI | CAGTG | 6 cut(s) | 542, 584, 681, 900, 1321, 2909 |
| BveI | ACCTGC | 2 cut(s) | 576, 1060 |
| Cac8I | GCNNGC | 8 cut(s) | 208, 363, 646, 697, 2346, 2777, 2818, 2925 |
| CaiI | CAGNNNCTG | 2 cut(s) | 802, 2099 |
| CciI | TCATGA | 1 cut(s) | 2260 |
| CfoI | GCGC | 3 cut(s) | 1041, 1663, 1852 |
| Cfr10I | RCCGGY | 1 cut(s) | 2923 |
| Cfr13I | GGNCC | 5 cut(s) | 38, 185, 1026, 2362, 2510 |
| Cfr9I | CCCGGG | 1 cut(s) | 251 |
| CseI | GACGC | 1 cut(s) | 2327 |
| Csp6I | GTAC | 5 cut(s) | 843, 1669, 2310, 2634, 2917 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 7, 42 |
| CviQI | GTAC | 5 cut(s) | 843, 1669, 2310, 2634, 2917 |
| DraI | TTTAAA | 3 cut(s) | 1203, 1399, 2494 |
| EaeI | YGGCCR | 2 cut(s) | 646, 2943 |
| Eam1104I | CTCTTC | 7 cut(s) | 65, 263, 309, 614, 815, 2535, 2854 |
| EarI | CTCTTC | 7 cut(s) | 65, 263, 309, 614, 815, 2535, 2854 |
| Ecl136II | GAGCTC | 1 cut(s) | 1558 |
| Eco130I | CCWWGG | 3 cut(s) | 352, 486, 1243 |
| Eco147I | AGGCCT | 1 cut(s) | 970 |
| Eco24I | GRGCYC | 2 cut(s) | 1560, 1774 |
| Eco31I | GGTCTC | 3 cut(s) | 342, 1232, 1988 |
| Eco32I | GATATC | 3 cut(s) | 244, 1731, 2746 |
| Eco47I | GGWCC | 2 cut(s) | 38, 2510 |
| Eco53kI | GAGCTC | 1 cut(s) | 1558 |
| Eco57I | CTGAAG | 4 cut(s) | 860, 1065, 1098, 3015 |
| Eco72I | CACGTG | 1 cut(s) | 1548 |
| Eco88I | CYCGRG | 2 cut(s) | 251, 2625 |
| Eco91I | GGTNACC | 1 cut(s) | 2189 |
| EcoICRI | GAGCTC | 1 cut(s) | 1558 |
| EcoO65I | GGTNACC | 1 cut(s) | 2189 |
| EcoRI | GAATTC | 2 cut(s) | 139, 1321 |
| EcoRII | CCWGG | 7 cut(s) | 1270, 1501, 2088, 2121, 2193, 2514, 2590 |
| EcoRV | GATATC | 3 cut(s) | 244, 1731, 2746 |
| EcoT14I | CCWWGG | 3 cut(s) | 352, 486, 1243 |
| EcoT22I | ATGCAT | 4 cut(s) | 525, 1511, 2662, 2851 |
| EcoT38I | GRGCYC | 2 cut(s) | 1560, 1774 |
| ErhI | CCWWGG | 3 cut(s) | 352, 486, 1243 |
| Esp3I | CGTCTC | 1 cut(s) | 283 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2273, 2305 |
| FaqI | GGGAC | 4 cut(s) | 234, 439, 1261, 2496 |
| FauNDI | CATATG | 2 cut(s) | 1213, 2650 |
| FbaI | TGATCA | 1 cut(s) | 781 |
| FblI | GTMKAC | 2 cut(s) | 1120, 1637 |
| Fnu4HI | GCNGC | 9 cut(s) | 126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952 |
| FriOI | GRGCYC | 2 cut(s) | 1560, 1774 |
| Fsp4HI | GCNGC | 9 cut(s) | 126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952 |
| GlaI | GCGC | 3 cut(s) | 1040, 1662, 1851 |
| GluI | GCNGC | 9 cut(s) | 126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952 |
| GsaI | CCCAGC | 1 cut(s) | 186 |
| GsuI | CTGGAG | 1 cut(s) | 1639 |
| HaeII | RGCGCY | 1 cut(s) | 1042 |
| HapII | CCGG | 8 cut(s) | 41, 179, 188, 252, 2322, 2751, 2924, 3022 |
| HgaI | GACGC | 1 cut(s) | 2327 |
| HhaI | GCGC | 3 cut(s) | 1041, 1663, 1852 |
| Hin1I | GRCGYC | 1 cut(s) | 2319 |
| Hin6I | GCGC | 3 cut(s) | 1039, 1661, 1850 |
| HinP1I | GCGC | 3 cut(s) | 1039, 1661, 1850 |
| HincII | GTYRAC | 3 cut(s) | 575, 2317, 2523 |
| HindII | GTYRAC | 3 cut(s) | 575, 2317, 2523 |
| HindIII | AAGCTT | 4 cut(s) | 363, 1857, 2294, 2610 |
| HinfI | GANTC | 9 cut(s) | 1220, 1286, 1328, 1367, 1375, 1923, 1959, 2444, 2524 |
| HpaII | CCGG | 8 cut(s) | 41, 179, 188, 252, 2322, 2751, 2924, 3022 |
| HphI | GGTGA | 5 cut(s) | 125, 803, 1103, 1338, 2183 |
| Hpy166II | GTNNAC | 6 cut(s) | 575, 1121, 1638, 2317, 2523, 2917 |
| Hpy8I | GTNNAC | 6 cut(s) | 575, 1121, 1638, 2317, 2523, 2917 |
| Hpy99I | CGWCG | 1 cut(s) | 52 |
| HpyCH4IV | ACGT | 4 cut(s) | 1547, 1869, 2463, 2565 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 539, 692, 836, 1386, 1856, 1906, 2063, 2951 |
| HpySE526I | ACGT | 4 cut(s) | 1547, 1869, 2463, 2565 |
| Hsp92I | GRCGYC | 1 cut(s) | 2319 |
| HspAI | GCGC | 3 cut(s) | 1039, 1661, 1850 |
| KroI | GCCGGC | 1 cut(s) | 2923 |
| KroNI | GCCGGC | 1 cut(s) | 2925 |
| Ksp22I | TGATCA | 1 cut(s) | 781 |
| LguI | GCTCTTC | 1 cut(s) | 815 |
| LmnI | GCTCC | 5 cut(s) | 14, 704, 1162, 1555, 3028 |
| Lsp1109I | GCAGC | 7 cut(s) | 112, 574, 2004, 2078, 2552, 2910, 2938 |
| MaeII | ACGT | 4 cut(s) | 1547, 1869, 2463, 2565 |
| MaeIII | GTNAC | 8 cut(s) | 1171, 1185, 1258, 1344, 1818, 1945, 2189, 2907 |
| MfeI | CAATTG | 1 cut(s) | 1746 |
| MflI | RGATCY | 7 cut(s) | 799, 1076, 1574, 1975, 2095, 2197, 2209 |
| MhlI | GDGCHC | 6 cut(s) | 1159, 1560, 1774, 1831, 2565, 2990 |
| MlsI | TGGCCA | 2 cut(s) | 648, 2945 |
| MluNI | TGGCCA | 2 cut(s) | 648, 2945 |
| MlyI | GAGTC | 2 cut(s) | 1322, 2518 |
| MmeI | TCCRAC | 3 cut(s) | 972, 1184, 2028 |
| Mox20I | TGGCCA | 2 cut(s) | 648, 2945 |
| Mph1103I | ATGCAT | 4 cut(s) | 525, 1511, 2662, 2851 |
| MroNI | GCCGGC | 1 cut(s) | 2923 |
| MroXI | GAANNNNTTC | 2 cut(s) | 196, 1078 |
| MscI | TGGCCA | 2 cut(s) | 648, 2945 |
| Msp20I | TGGCCA | 2 cut(s) | 648, 2945 |
| MspA1I | CMGCKG | 2 cut(s) | 565, 2069 |
| MspI | CCGG | 8 cut(s) | 41, 179, 188, 252, 2322, 2751, 2924, 3022 |
| MunI | CAATTG | 1 cut(s) | 1746 |
| Mva1269I | GAATGC | 1 cut(s) | 523 |
| MvaI | CCWGG | 7 cut(s) | 1272, 1503, 2090, 2123, 2195, 2516, 2592 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 539, 692, 836, 1386, 1856, 1906, 2063, 2951 |
| NaeI | GCCGGC | 1 cut(s) | 2925 |
| NciI | CCSGG | 5 cut(s) | 179, 189, 252, 253, 2751 |
| NdeI | CATATG | 2 cut(s) | 1213, 2650 |
| NgoMIV | GCCGGC | 1 cut(s) | 2923 |
| NheI | GCTAGC | 1 cut(s) | 2816 |
| NlaIV | GGNNCC | 7 cut(s) | 16, 235, 700, 1017, 1576, 2199, 2512 |
| NmuCI | GTSAC | 4 cut(s) | 1258, 1344, 2189, 2907 |
| NsiI | ATGCAT | 4 cut(s) | 525, 1511, 2662, 2851 |
| NspI | RCATGY | 1 cut(s) | 2735 |
| NspV | TTCGAA | 1 cut(s) | 2383 |
| PaeR7I | CTCGAG | 1 cut(s) | 2625 |
| PagI | TCATGA | 1 cut(s) | 2260 |
| PasI | CCCWGGG | 1 cut(s) | 2515 |
| PceI | AGGCCT | 1 cut(s) | 970 |
| PciSI | GCTCTTC | 1 cut(s) | 815 |
| PctI | GAATGC | 1 cut(s) | 523 |
| PdiI | GCCGGC | 1 cut(s) | 2925 |
| PdmI | GAANNNNTTC | 2 cut(s) | 196, 1078 |
| PfeI | GAWTC | 7 cut(s) | 1220, 1286, 1367, 1375, 1923, 1959, 2444 |
| PflFI | GACNNNGTC | 1 cut(s) | 2187 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2128 |
| PfoI | TCCNGGA | 1 cut(s) | 2590 |
| PkrI | GCNGC | 9 cut(s) | 127, 564, 1603, 1994, 2068, 2542, 2675, 2900, 2953 |
| PleI | GAGTC | 2 cut(s) | 1322, 2518 |
| PmaCI | CACGTG | 1 cut(s) | 1548 |
| PmlI | CACGTG | 1 cut(s) | 1548 |
| PpsI | GAGTC | 2 cut(s) | 1322, 2518 |
| Ppu21I | YACGTR | 2 cut(s) | 1548, 2566 |
| PshBI | ATTAAT | 2 cut(s) | 734, 2852 |
| Psp124BI | GAGCTC | 1 cut(s) | 1560 |
| Psp6I | CCWGG | 7 cut(s) | 1270, 1501, 2088, 2121, 2193, 2514, 2590 |
| PspCI | CACGTG | 1 cut(s) | 1548 |
| PspEI | GGTNACC | 1 cut(s) | 2189 |
| PspFI | CCCAGC | 1 cut(s) | 182 |
| PspGI | CCWGG | 7 cut(s) | 1270, 1501, 2088, 2121, 2193, 2514, 2590 |
| PspN4I | GGNNCC | 7 cut(s) | 16, 235, 700, 1017, 1576, 2199, 2512 |
| PspPI | GGNCC | 5 cut(s) | 38, 185, 1026, 2362, 2510 |
| PstNI | CAGNNNCTG | 2 cut(s) | 802, 2099 |
| PsuI | RGATCY | 7 cut(s) | 799, 1076, 1574, 1975, 2095, 2197, 2209 |
| PsyI | GACNNNGTC | 1 cut(s) | 2187 |
| PvuII | CAGCTG | 1 cut(s) | 2069 |
| RsaI | GTAC | 5 cut(s) | 844, 1670, 2311, 2635, 2918 |
| RsaNI | GTAC | 5 cut(s) | 843, 1669, 2310, 2634, 2917 |
| SacI | GAGCTC | 1 cut(s) | 1560 |
| SapI | GCTCTTC | 1 cut(s) | 815 |
| SatI | GCNGC | 9 cut(s) | 126, 563, 1602, 1993, 2067, 2541, 2674, 2899, 2952 |
| Sau96I | GGNCC | 5 cut(s) | 38, 185, 1026, 2362, 2510 |
| ScaI | AGTACT | 1 cut(s) | 2311 |
| SchI | GAGTC | 2 cut(s) | 1322, 2518 |
| SduI | GDGCHC | 6 cut(s) | 1159, 1560, 1774, 1831, 2565, 2990 |
| SfcI | CTRYAG | 4 cut(s) | 463, 1121, 1476, 2274 |
| Sfr274I | CTCGAG | 1 cut(s) | 2625 |
| SfuI | TTCGAA | 1 cut(s) | 2383 |
| SinI | GGWCC | 2 cut(s) | 38, 2510 |
| SlaI | CTCGAG | 1 cut(s) | 2625 |
| SmaI | CCCGGG | 1 cut(s) | 253 |
| SmiI | ATTTAAAT | 1 cut(s) | 1203 |
| SmlI | CTYRAG | 6 cut(s) | 885, 985, 1190, 2625, 2720, 3046 |
| SmoI | CTYRAG | 6 cut(s) | 885, 985, 1190, 2625, 2720, 3046 |
| SseBI | AGGCCT | 1 cut(s) | 970 |
| SsiI | CCGC | 4 cut(s) | 565, 1387, 1602, 2674 |
| SspI | AATATT | 1 cut(s) | 2106 |
| SstI | GAGCTC | 1 cut(s) | 1560 |
| StuI | AGGCCT | 1 cut(s) | 970 |
| StyI | CCWWGG | 3 cut(s) | 352, 486, 1243 |
| SwaI | ATTTAAAT | 1 cut(s) | 1203 |
| TaiI | ACGT | 4 cut(s) | 1550, 1872, 2466, 2568 |
| TaqI | TCGA | 3 cut(s) | 1455, 2383, 2626 |
| TatI | WGTACW | 4 cut(s) | 1668, 2309, 2633, 2916 |
| TauI | GCSGC | 2 cut(s) | 1604, 2676 |
| TfiI | GAWTC | 7 cut(s) | 1220, 1286, 1367, 1375, 1923, 1959, 2444 |
| TscAI | CASTG | 6 cut(s) | 549, 584, 688, 907, 1321, 2916 |
| TseFI | GTSAC | 4 cut(s) | 1258, 1344, 2189, 2907 |
| TseI | GCWGC | 7 cut(s) | 125, 562, 1992, 2066, 2540, 2898, 2951 |
| Tsp45I | GTSAC | 4 cut(s) | 1258, 1344, 2189, 2907 |
| TspGWI | ACGGA | 4 cut(s) | 65, 1520, 2242, 2326 |
| TspMI | CCCGGG | 1 cut(s) | 251 |
| TspRI | CASTG | 6 cut(s) | 549, 584, 688, 907, 1321, 2916 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2187 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2128 |
| VpaK11BI | GGWCC | 2 cut(s) | 38, 2510 |
| VspI | ATTAAT | 2 cut(s) | 734, 2852 |
| XapI | RAATTY | 2 cut(s) | 139, 1321 |
| XbaI | TCTAGA | 2 cut(s) | 1534, 1831 |
| XceI | RCATGY | 1 cut(s) | 2735 |
| XhoI | CTCGAG | 1 cut(s) | 2625 |
| XmaI | CCCGGG | 1 cut(s) | 251 |
| XmaJI | CCTAGG | 1 cut(s) | 1243 |
| XmiI | GTMKAC | 2 cut(s) | 1120, 1637 |
| XmnI | GAANNNNTTC | 2 cut(s) | 196, 1078 |
| ZrmI | AGTACT | 1 cut(s) | 2311 |
| Zsp2I | ATGCAT | 4 cut(s) | 525, 1511, 2662, 2851 |