Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001572

Physical Location & Seq

Genomic Coordinates Reverse (-)

55343522 .. 55350675

Gene Structure 7154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG294200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

ATGGAGGCTTTTGGAGGCAAGCCTCGGAATTTGTATGGTCCGGTGGTGCCGGATTTGAAGGCGGTTGGGAAGAAGAGTTTGGAGTGGGATTTGAATGATTGGAAATGGGACGGCCATGTTTTTACTGCCACTCCTTTGAATCCTGTGCCCTCTGATTGTAGGAGTAGGCAGTTGTTTCCGACTGGGCCGGAAACTCCATCCAATGCTGGTTGGTCCAACAGTAGTTCTTCTGGTTCGGATGATATCAGTCCGGGGAATGAGAAAGGTAAAAGAGAATTGGAGAAAAGGAGAAGGGCTGCTGTTGTAGAAAATGAAGAAATAAATGATGAAGCTGGGTCTCTTAATCTCAAGCTTGGTGGGCAGGTTTACCCAATTTTGGAAGAAGATGGAAAGACCGGGAAGAAGACGAAGATTGTTGGGACTACTTCCAACCGCGCGGTTTGTCAGGTGGAGGACTGCAAGGCTGATCTTAGCCATGCCAAGGATTACCACCGACGGCATAAGGTCTGTGATATGCATTCCAAGGCAACCACAGCTATGGTGGGTAATAATTTGCAGCGGTTTTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGACGTTTGGCTGGCCATAATAGGAGGAGAAGAAAAACACATCCTGACACTGTTGTTAATGGAGGCTCCATGAATGATGAAAGAGGAAGCAGTTATATATTGATTACTTTGCTAAGAATACTCTCCAATATGCACTCTAATAGTTCTGATCAAACAAAGGATCAGGATCTGCTTTCTCATCTGTTGAAGAACATAGCCAATAATATTGGTACTGTTGATGGAAGGAACATATCTGCATTGCTGCAGGGATCTCAAGGTTTACTTAATGGTGGGTCTTCCGTTCAGACTGCACAGAAGGTGCCAGATATTGGTTTCAATGGCAAGGAACCCAGTAGGCCTTCTGTTTCAACCTCTAAGATGGACGATTGTAGTAATCTTAATGGTCATTTAAGGCCTACAGGACAGTGTCCGACAGGACCTGCATCAGATAAGTTACTGAACAGAATATCTTCAGTTGGTGGTGATCTTGGAAGTCAAGCTCTTTCTGGTGTGCGGGCTACCAAGTCACTTTCCTCAAGAGACAGTCTTCCGCCCAAATCAGTTGCACCGGAATATGGGAGGATCCAGTTAAATGAGATCGATTTAAATAATACATATGACGATTCACAGGAGTATTTAGAGAACCTAGGGAATTCTCATGTTCCTGTAAATCCAGGGACCGAGTCTCATGGAGGTCCCTTTTGGATACAGCGTGATTCTCAAAAGTCAAGCCCACCTCAGACAAGTGGGAATTCAGACTCAGCTGCTACTCGGTCACCATCAAGTTCTAGTGGAGAAGCTCAGAGTCGCACGGATCGGATTGTCTTCAAACTATTCGGTAAAGACCCGAGTGATCTTCCATTTGGTCTGCGATCACAGGTCCTCGGCTGGTTATCCAGCACTCCTACAGACATTGAAAGCTACATAAGGCCAGGCTGTATAATTTTGACAATTTACCTCCGTCTAGAAAAATCCACATGGGAGGAGCTTTGCTGTCATCTGGGATCCAGTTTGGCAAAACTTCTAGATGCTTCCAATGATCCTTTTTGGAGAACAGGATGGGTGTATACTAGGGTGCAACATTTTGTAGCATTTGTGTACAATGGTCAGGTTGTCTTAGACACACCCTTACCTCTTAGAAGCCACAAAACATGCAGGATCTCATGCATCAAACCAATTGCTGTCTCTTTATCTGAGAGAGCTGAATTTGTAGTGAAAGGTTTTAATCTTTCTAGTTCCACTACAAGGTTACTCTGTGCTCTAGAAGGGAAGTATTTGGCCCAAGAAACTTGTCATGATTTGATGGAAGCTACTGATACAACTAGTGAGCATGATGGGCTACAGTGCCTCAGATTCTCTTGCTCTATCCCAGATGCTACTGGCCGAGGATTCATTGAGGTTGAAGATCATGGTCTCAGTAGCAGCTTCTTTCCATTCATAGTTGCAGAGCAGGAAGTATGTTCAGAGATTTGCATCCTGGAGGATGCAATTGAGGCTGCCGAGGCTGCCAATGACATGCAGAGAGATCCTGAAATAATGGAAGCCAAGAACCAAGCCATGGACTTCATACATGAATTGGGTTGGCTCCTTCATAAAAGTCAAGTCAAGTTAAGAATTGGTCACACAGATCCCAAACTAGATCTGTTTCCTTTTCAACGGTTTAGATTACTTATGGAGTTCTCCATGGAGCATGATTGGTGTGCTGTAGTGAATAAACTCTTAGGCATTCTGTATGAAGGTACTGTTGACGCTGGAGAGCATCTTTCCATTGAGCTTGCGTTATTGGATATGGGCCTCCTCCACAGAGCTGTGCAAAGAAATTGCAAACCTATGGTGGAATTCTTGTTAAGATTTGTCCCAGATAAAGGTTTAGACAAAGCAGAGTTGGAGGAGAAGCAACAAGTTGACAGGAACAGCAACAGGTTCTTATTTAGACCTGATGTTGTCGGTCCCATGGGGTTGACTCCTCTTCATGTTGCAGCTAGTACAGATGGCTGTGAGTATGTTTTGGATGCCTTAACTAATGATCCTGGAAAGGCGGGAATTAAAGCTTGGAAAAATGCCCGAGACAGTTTAGGATTGACACCATATGATTATGCATGCCTGCGAGGCCGTTACACATATATCCATATTGTCCAGAGGAAAATCAGCAAAACAGAAAGCGGTCATGTGGTGCTTGATATCCCTGGCACGATTTTAGACAAGAACAGCAAGCAGAAACAAATAGACGGGCATAAATCATCAAAAGTAGCCAGCTTCAACACTGAAAAGATTGCAATGACAGCAATACACGGAGACTGCAAGTTATGTAACCAGAAACTAGCATATGGCAGCACAAGGTCACTGGTGTACAGACCGGCAATGCTGTCAATGGTGACCGTTGCTGCTGTCTGTGTTTGTGTGGCCTTGCTATTTAAGAGCTCACCCGAAGTTGTTTTCGTGTTCCGGCCTTTCAGGTGGGAACTCTTGAAGTATGGTCCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

1030

Amino Acids

113.93

Weight (kDa)

7.15

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	148 - 221	8.2e-30	SBP domain
Ig_SPL7	PF26102	583 - 693	9.4e-45	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47070 AT2G47070 AT3G60030
fragaria_vesca	FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420 FvH4_4g21420
malus_domestica	MD13G1141300.v1.1 MD13G1141400.v1.1 MD16G1137600.v1.1 MD16G1137700.v1.1
prunus_persica	Prupe.1G106500_v2.0.a1 Prupe.1G106500_v2.0.a1 Prupe.1G106600_v2.0.a1
pyrus_communis	pycom13g12280 pycom13g12290 pycom16g12140 pycom16g12150 pycom16g12160
rosa_chinensis	RchiOBHm_Chr4g0427341 RchiOBHm_Chr4g0427351
rosa_laevigata	RLG00000007250 RLG00000007251
rosa_multiflora	Rmu_sc0003813.1_g000017 Rmu_sc0003813.1_g000018
rosa_roxburghii	Rroxscaffold_5G00369020 Rroxscaffold_5G00369030
rosa_rugosa	Rorug04G0216800
rosa_samantha	Rh4AG273100 Rh4AG273300 Rh4BG278800 Rh4BG278900 Rh4CG294100 Rh4CG294200 Rh4DG276200 Rh4DG276300
rosa_wichuraiana	Rw4G023700 Rw4G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	352, 570, 1054
AccB1I	GGYRCC	2 cut(s)	46, 925
AccB7I	CCANNNNNTGG	2 cut(s)	935, 2164
AccI	GTMKAC	2 cut(s)	628, 1673
AccII	CGCG	2 cut(s)	435, 437
AciI	CCGC	8 cut(s)	62, 433, 437, 559, 1120, 1157, 2645, 2769
AcoI	YGGCCR	3 cut(s)	112, 640, 1987
AcsI	RAATTY	5 cut(s)	28, 1258, 1357, 1811, 2444
AcuI	CTGAAG	1 cut(s)	1062
AfaI	GTAC	5 cut(s)	838, 1706, 2347, 2593, 2957
AfiI	CCNNNNNNNGG	7 cut(s)	376, 481, 935, 1181, 1851, 2164, 2471
AhlI	ACTAGT	1 cut(s)	1928
AjnI	CCWGG	5 cut(s)	1279, 1537, 2082, 2635, 2791
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 2641, 2673
Alw21I	GWGCWC	2 cut(s)	1867, 3029
Alw26I	GTCTC	7 cut(s)	342, 1140, 1296, 1795, 2024, 2667, 2895
AlwNI	CAGNNNCTG	2 cut(s)	796, 1046
Ama87I	CYCGRG	2 cut(s)	1453, 2670
ApoI	RAATTY	5 cut(s)	28, 1258, 1357, 1811, 2444
Asp700I	GAANNNNTTC	1 cut(s)	1075
AspA2I	CCTAGG	1 cut(s)	1252
AspLEI	GCGC	1 cut(s)	437
AsuC2I	CCSGG	2 cut(s)	252, 397
AsuHPI	GGTGA	4 cut(s)	1100, 1374, 2992, 3021
AvaI	CYCGRG	2 cut(s)	1453, 2670
AvaII	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2555, 3083
AvrII	CCTAGG	1 cut(s)	1252
BaeGI	GKGCMC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	642
BamHI	GGATCC	2 cut(s)	1188, 1610
BanI	GGYRCC	2 cut(s)	46, 925
BanII	GRGCYC	1 cut(s)	3029
BbsI	GAAGAC	4 cut(s)	410, 894, 1145, 1423
Bbv12I	GWGCWC	2 cut(s)	1867, 3029
BccI	CCATC	9 cut(s)	205, 380, 839, 979, 1393, 1659, 1903, 1934, 2591
BceAI	ACGGC	3 cut(s)	127, 512, 2703
BciT130I	CCWGG	5 cut(s)	1281, 1539, 2084, 2637, 2793
BciVI	GTATCC	1 cut(s)	1305
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	2 cut(s)	252, 397
BcoDI	GTCTC	7 cut(s)	342, 1140, 1296, 1795, 2024, 2667, 2895
BcuI	ACTAGT	1 cut(s)	1928
BfmI	CTRYAG	5 cut(s)	869, 1023, 1512, 1946, 2310
BfuAI	ACCTGC	3 cut(s)	352, 570, 1054
BfuI	GTATCC	1 cut(s)	1305
BglI	GCCNNNNNGGC	1 cut(s)	2715
BglII	AGATCT	1 cut(s)	2245
BlnI	CCTAGG	1 cut(s)	1252
Bme1390I	CCNGG	7 cut(s)	252, 397, 1281, 1539, 2084, 2637, 2793
Bme18I	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2555, 3083
BmeT110I	CYCGRG	2 cut(s)	1453, 2670
BmrFI	CCNGG	7 cut(s)	252, 397, 1281, 1539, 2084, 2637, 2793
BmrI	ACTGGG	2 cut(s)	192, 951
BmsI	GCATC	8 cut(s)	1058, 1624, 1782, 1969, 2080, 2088, 2374, 2608
BmuI	ACTGGG	2 cut(s)	192, 951
BpiI	GAAGAC	4 cut(s)	410, 894, 1145, 1423
BpmI	CTGGAG	2 cut(s)	2105, 2379
BpuEI	CTTGAG	3 cut(s)	332, 864, 1126
BpuMI	CCSGG	2 cut(s)	252, 397
Bsa29I	ATCGAT	1 cut(s)	1206
BsaBI	GATNNNNATC	2 cut(s)	792, 2078
BsaI	GGTCTC	2 cut(s)	342, 2024
BsaWI	WCCGGW	2 cut(s)	40, 1174
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	7 cut(s)	376, 481, 935, 1181, 1851, 2164, 2471
Bse118I	RCCGGY	1 cut(s)	2962
Bse1I	ACTGG	6 cut(s)	187, 957, 1192, 1614, 1990, 2955
Bse3DI	GCAATG	3 cut(s)	863, 2889, 2973
Bse8I	GATNNNNATC	2 cut(s)	792, 2078
BseBI	CCWGG	5 cut(s)	1281, 1539, 2084, 2637, 2793
BseCI	ATCGAT	1 cut(s)	1206
BseGI	GGATG	7 cut(s)	197, 244, 667, 1670, 2079, 2095, 2623
BseJI	GATNNNNATC	2 cut(s)	792, 2078
BseLI	CCNNNNNNNGG	7 cut(s)	376, 481, 935, 1181, 1851, 2164, 2471
BseMI	GCAATG	3 cut(s)	863, 2889, 2973
BseMII	CTCAG	6 cut(s)	1358, 1380, 1421, 1791, 1969, 2035
BseNI	ACTGG	6 cut(s)	187, 957, 1192, 1614, 1990, 2955
BseRI	GAGGAG	5 cut(s)	667, 1604, 2393, 2510, 2562
BseSI	GKGCMC	1 cut(s)	150
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	900
Bsh1236I	CGCG	2 cut(s)	435, 437
BshNI	GGYRCC	2 cut(s)	46, 925
BshVI	ATCGAT	1 cut(s)	1206
BsiHKAI	GWGCWC	2 cut(s)	1867, 3029
BsiHKCI	CYCGRG	2 cut(s)	1453, 2670
BsiSI	CCGG	8 cut(s)	41, 50, 188, 251, 396, 1175, 2963, 3052
BslFI	GGGAC	6 cut(s)	122, 433, 1287, 1297, 2447, 2541
BslI	CCNNNNNNNGG	7 cut(s)	376, 481, 935, 1181, 1851, 2164, 2471
BsmAI	GTCTC	7 cut(s)	342, 1140, 1296, 1795, 2024, 2667, 2895
BsmFI	GGGAC	6 cut(s)	122, 433, 1287, 1297, 2447, 2541
BsmI	GAATGC	2 cut(s)	517, 2331
Bso31I	GGTCTC	2 cut(s)	342, 2024
BsoBI	CYCGRG	2 cut(s)	1453, 2670
Bsp1286I	GDGCHC	3 cut(s)	150, 1867, 3029
Bsp1407I	TGTACA	2 cut(s)	1704, 2955
Bsp19I	CCATGG	3 cut(s)	2163, 2289, 2559
BspACI	CCGC	8 cut(s)	62, 433, 437, 559, 1120, 1157, 2645, 2769
BspCNI	CTCAG	6 cut(s)	1357, 1379, 1420, 1792, 1968, 2034
BspDI	ATCGAT	1 cut(s)	1206
BspFNI	CGCG	2 cut(s)	435, 437
BspHI	TCATGA	1 cut(s)	1900
BspMAI	CTGCAG	1 cut(s)	873
BspMI	ACCTGC	3 cut(s)	352, 570, 1054
BspT107I	GGYRCC	2 cut(s)	46, 925
BspTNI	GGTCTC	2 cut(s)	342, 2024
BsrDI	GCAATG	3 cut(s)	863, 2889, 2973
BsrFI	RCCGGY	1 cut(s)	2962
BsrGI	TGTACA	2 cut(s)	1704, 2955
BsrI	ACTGG	6 cut(s)	187, 957, 1192, 1614, 1990, 2955
BssAI	RCCGGY	1 cut(s)	2962
BssNAI	GTATAC	1 cut(s)	1674
BssT1I	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
Bst1107I	GTATAC	1 cut(s)	1674
Bst2UI	CCWGG	5 cut(s)	1281, 1539, 2084, 2637, 2793
Bst6I	CTCTTC	3 cut(s)	68, 608, 2580
BstAUI	TGTACA	2 cut(s)	1704, 2955
BstC8I	GCNNGC	8 cut(s)	20, 640, 1122, 2382, 2707, 2711, 2819, 2860
BstDSI	CCRYGG	3 cut(s)	2163, 2289, 2559
BstEII	GGTNACC	2 cut(s)	1380, 2980
BstF5I	GGATG	7 cut(s)	197, 244, 667, 1670, 2079, 2095, 2623
BstFNI	CGCG	2 cut(s)	435, 437
BstHHI	GCGC	1 cut(s)	437
BstMAI	GTCTC	7 cut(s)	342, 1140, 1296, 1795, 2024, 2667, 2895
BstMWI	GCNNNNNNNGC	8 cut(s)	358, 533, 1942, 2099, 2108, 2111, 2715, 2888
BstNI	CCWGG	5 cut(s)	1281, 1539, 2084, 2637, 2793
BstNSI	RCATGY	3 cut(s)	1761, 2125, 2709
BstPI	GGTNACC	2 cut(s)	1380, 2980
BstSCI	CCNGG	7 cut(s)	250, 395, 1279, 1537, 2082, 2635, 2791
BstSFI	CTRYAG	5 cut(s)	869, 1023, 1512, 1946, 2310
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	2 cut(s)	435, 437
BstV2I	GAAGAC	4 cut(s)	410, 894, 1145, 1423
BstX2I	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2131, 2233, 2245
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstYI	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2131, 2233, 2245
BstZ17I	GTATAC	1 cut(s)	1674
Bsu15I	ATCGAT	1 cut(s)	1206
BsuI	GTATCC	1 cut(s)	1305
BsuTUI	ATCGAT	1 cut(s)	1206
BtgI	CCRYGG	3 cut(s)	2163, 2289, 2559
BtsCI	GGATG	7 cut(s)	197, 244, 667, 1670, 2079, 2095, 2623
BtsIMutI	CAGTG	6 cut(s)	578, 675, 1037, 1955, 2868, 2948
BveI	ACCTGC	3 cut(s)	352, 570, 1054
Cac8I	GCNNGC	8 cut(s)	20, 640, 1122, 2382, 2707, 2711, 2819, 2860
CaiI	CAGNNNCTG	2 cut(s)	796, 1046
CciI	TCATGA	1 cut(s)	1900
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	1 cut(s)	2962
ClaI	ATCGAT	1 cut(s)	1206
CseI	GACGC	1 cut(s)	2363
Csp6I	GTAC	5 cut(s)	837, 1705, 2346, 2592, 2956
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviQI	GTAC	5 cut(s)	837, 1705, 2346, 2592, 2956
DraI	TTTAAA	1 cut(s)	1212
EaeI	YGGCCR	3 cut(s)	112, 640, 1987
Eam1104I	CTCTTC	3 cut(s)	68, 608, 2580
EarI	CTCTTC	3 cut(s)	68, 608, 2580
EciI	GGCGGA	1 cut(s)	1146
Ecl136II	GAGCTC	1 cut(s)	3027
Eco130I	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
Eco147I	AGGCCT	2 cut(s)	964, 1021
Eco24I	GRGCYC	1 cut(s)	3029
Eco31I	GGTCTC	2 cut(s)	342, 2024
Eco32I	GATATC	2 cut(s)	244, 2788
Eco47I	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2555, 3083
Eco53kI	GAGCTC	1 cut(s)	3027
Eco57I	CTGAAG	1 cut(s)	1062
Eco88I	CYCGRG	2 cut(s)	1453, 2670
Eco91I	GGTNACC	2 cut(s)	1380, 2980
EcoICRI	GAGCTC	1 cut(s)	3027
EcoO109I	RGGNCCY	3 cut(s)	1043, 1301, 1486
EcoO65I	GGTNACC	2 cut(s)	1380, 2980
EcoRI	GAATTC	3 cut(s)	1258, 1357, 2444
EcoRII	CCWGG	5 cut(s)	1279, 1537, 2082, 2635, 2791
EcoRV	GATATC	2 cut(s)	244, 2788
EcoT14I	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
EcoT22I	ATGCAT	3 cut(s)	519, 1775, 2707
EcoT38I	GRGCYC	1 cut(s)	3029
ErhI	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	6 cut(s)	122, 433, 1287, 1297, 2447, 2541
FauI	CCCGC	2 cut(s)	1113, 2638
FauNDI	CATATG	3 cut(s)	1222, 2695, 2932
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	2 cut(s)	628, 1673
FokI	GGATG	7 cut(s)	184, 251, 654, 1677, 2066, 2102, 2630
FriOI	GRGCYC	1 cut(s)	3029
GlaI	GCGC	1 cut(s)	436
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	2 cut(s)	2105, 2379
HapII	CCGG	8 cut(s)	41, 50, 188, 251, 396, 1175, 2963, 3052
HgaI	GACGC	1 cut(s)	2363
HhaI	GCGC	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	4 cut(s)	569, 2353, 2512, 2568
HindII	GTYRAC	4 cut(s)	569, 2353, 2512, 2568
HindIII	AAGCTT	2 cut(s)	350, 2655
HinfI	GANTC	9 cut(s)	139, 1229, 1289, 1322, 1364, 1411, 1959, 1995, 2569
HpaII	CCGG	8 cut(s)	41, 50, 188, 251, 396, 1175, 2963, 3052
HphI	GGTGA	4 cut(s)	1100, 1374, 2992, 3021
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	9 cut(s)	52, 285, 602, 843, 916, 975, 1865, 2204, 2336
HpyCH4IV	ACGT	1 cut(s)	631
HpyF10VI	GCNNNNNNNGC	8 cut(s)	358, 533, 1942, 2099, 2108, 2111, 2715, 2888
HpySE526I	ACGT	1 cut(s)	631
HspAI	GCGC	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	775
LmnI	GCTCC	4 cut(s)	698, 1591, 2196, 2293
LweI	GCATC	8 cut(s)	1058, 1624, 1782, 1969, 2080, 2088, 2374, 2608
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	9 cut(s)	1059, 1131, 1380, 1854, 2225, 2720, 2915, 2946, 2980
MfeI	CAATTG	2 cut(s)	1782, 2094
MflI	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2131, 2233, 2245
MhlI	GDGCHC	3 cut(s)	150, 1867, 3029
MlsI	TGGCCA	1 cut(s)	642
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	4 cut(s)	1298, 1358, 1420, 2563
MmeI	TCCRAC	5 cut(s)	203, 240, 453, 1061, 2472
Mox20I	TGGCCA	1 cut(s)	642
Mph1103I	ATGCAT	3 cut(s)	519, 1775, 2707
MroXI	GAANNNNTTC	1 cut(s)	1075
MscI	TGGCCA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	2 cut(s)	559, 1370
MspI	CCGG	8 cut(s)	41, 50, 188, 251, 396, 1175, 2963, 3052
MspR9I	CCNGG	7 cut(s)	252, 397, 1281, 1539, 2084, 2637, 2793
MunI	CAATTG	2 cut(s)	1782, 2094
Mva1269I	GAATGC	2 cut(s)	517, 2331
MvaI	CCWGG	5 cut(s)	1281, 1539, 2084, 2637, 2793
MvnI	CGCG	2 cut(s)	435, 437
MwoI	GCNNNNNNNGC	8 cut(s)	358, 533, 1942, 2099, 2108, 2111, 2715, 2888
NciI	CCSGG	2 cut(s)	252, 397
NcoI	CCATGG	3 cut(s)	2163, 2289, 2559
NdeI	CATATG	3 cut(s)	1222, 2695, 2932
NmeAIII	GCCGAG	3 cut(s)	1470, 2015, 2131
NmuCI	GTSAC	5 cut(s)	1131, 1380, 2225, 2946, 2980
NsiI	ATGCAT	3 cut(s)	519, 1775, 2707
NspI	RCATGY	3 cut(s)	1761, 2125, 2709
PaeI	GCATGC	1 cut(s)	2709
PagI	TCATGA	1 cut(s)	1900
PceI	AGGCCT	2 cut(s)	964, 1021
PctI	GAATGC	2 cut(s)	517, 2331
PdmI	GAANNNNTTC	1 cut(s)	1075
PfeI	GAWTC	5 cut(s)	139, 1229, 1322, 1959, 1995
PflFI	GACNNNGTC	2 cut(s)	1032, 1288
PflMI	CCANNNNNTGG	2 cut(s)	935, 2164
PfoI	TCCNGGA	2 cut(s)	2082, 2635
PleI	GAGTC	4 cut(s)	1297, 1358, 1419, 2563
PpsI	GAGTC	4 cut(s)	1297, 1358, 1419, 2563
PpuMI	RGGWCCY	3 cut(s)	1043, 1301, 1486
Psp124BI	GAGCTC	1 cut(s)	3029
Psp5II	RGGWCCY	3 cut(s)	1043, 1301, 1486
Psp6I	CCWGG	5 cut(s)	1279, 1537, 2082, 2635, 2791
PspEI	GGTNACC	2 cut(s)	1380, 2980
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	5 cut(s)	1279, 1537, 2082, 2635, 2791
PspPPI	RGGWCCY	3 cut(s)	1043, 1301, 1486
PstI	CTGCAG	1 cut(s)	873
PstNI	CAGNNNCTG	2 cut(s)	796, 1046
PsuI	RGATCY	8 cut(s)	793, 875, 1188, 1610, 1764, 2131, 2233, 2245
PsyI	GACNNNGTC	2 cut(s)	1032, 1288
PvuII	CAGCTG	1 cut(s)	1370
RsaI	GTAC	5 cut(s)	838, 1706, 2347, 2593, 2957
RsaNI	GTAC	5 cut(s)	837, 1705, 2346, 2592, 2956
RseI	CAYNNNNRTG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	3029
SchI	GAGTC	4 cut(s)	1298, 1358, 1420, 2563
ScrFI	CCNGG	7 cut(s)	252, 397, 1281, 1539, 2084, 2637, 2793
SduI	GDGCHC	3 cut(s)	150, 1867, 3029
SfaNI	GCATC	8 cut(s)	1058, 1624, 1782, 1969, 2080, 2088, 2374, 2608
SfcI	CTRYAG	5 cut(s)	869, 1023, 1512, 1946, 2310
SinI	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2555, 3083
SmiI	ATTTAAAT	1 cut(s)	1212
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	3 cut(s)	347, 879, 1141
SmoI	CTYRAG	3 cut(s)	347, 879, 1141
SpeI	ACTAGT	1 cut(s)	1928
SphI	GCATGC	1 cut(s)	2709
SseBI	AGGCCT	2 cut(s)	964, 1021
SsiI	CCGC	8 cut(s)	62, 433, 437, 559, 1120, 1157, 2645, 2769
SspI	AATATT	1 cut(s)	832
SstI	GAGCTC	1 cut(s)	3029
StuI	AGGCCT	2 cut(s)	964, 1021
StyD4I	CCNGG	7 cut(s)	250, 395, 1279, 1537, 2082, 2635, 2791
StyI	CCWWGG	6 cut(s)	480, 522, 1252, 2163, 2289, 2559
SwaI	ATTTAAAT	1 cut(s)	1212
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	1 cut(s)	1206
TaqII	GACCGA	3 cut(s)	1301, 1368, 2543
TatI	WGTACW	3 cut(s)	1704, 2591, 2955
TfiI	GAWTC	5 cut(s)	139, 1229, 1322, 1959, 1995
TscAI	CASTG	6 cut(s)	578, 682, 1037, 1955, 2875, 2955
TseFI	GTSAC	5 cut(s)	1131, 1380, 2225, 2946, 2980
Tsp45I	GTSAC	5 cut(s)	1131, 1380, 2225, 2946, 2980
TspGWI	ACGGA	4 cut(s)	895, 1433, 1556, 2913
TspRI	CASTG	6 cut(s)	578, 682, 1037, 1955, 2875, 2955
Tth111I	GACNNNGTC	2 cut(s)	1032, 1288
Van91I	CCANNNNNTGG	2 cut(s)	935, 2164
VpaK11BI	GGWCC	8 cut(s)	38, 213, 1043, 1284, 1301, 1486, 2555, 3083
XapI	RAATTY	5 cut(s)	28, 1258, 1357, 1811, 2444
XbaI	TCTAGA	3 cut(s)	1570, 1630, 1867
XceI	RCATGY	3 cut(s)	1761, 2125, 2709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmaJI	CCTAGG	1 cut(s)	1252
XmiI	GTMKAC	2 cut(s)	628, 1673
XmnI	GAANNNNTTC	1 cut(s)	1075
Zsp2I	ATGCAT	3 cut(s)	519, 1775, 2707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.