Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Forward (+)

18532163 .. 18538598

Gene Structure 6436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTGGGGGCTCGAACCCATTACCACAAGAGATACAGTTATGGCCTTGAGAACAGTGACGAGGAAGTTAGGGAGTAAACTATCACACAGGTTTTCTCCTGCTGCTCTATTGCATTCACATGCTACAAGCTTTGGATTTAAAGAAGTAAGGGAAGAGGAAAAAAGTCGAATGGTTGGTAATGTCTTCAGCAATGTTGCCTCAAACTATGATTTAATGAATGATGTGATGAGTGCAGGATTACACAGATTATGGAAGGATAGATTAGTTTCCAAACTGAATCCTTTCCCTGGAATGAAGCATCTTGATGTGGCTGGTGGGACAGGTGATGTTGCCTTCAGAATACTAGACTCAGTAAACAGCATCAGACGTAGAGCTATGCAAGATGTTCTCGAAGATGATTTACAGGAAGAAACTAAGATTTATGTATGTGACATAAACCCTAACATGTTGAATGTTGGTAAAAAGCGGGCGTTGGAGAGAGGTATTGGAGAAGACAAATCCCTTCTATGGGCGGAGGGAGATGCAGAAGCCTTGTCTTTTGGAGATAATACAATGGATGGTTACACAATTGCATTTGGAATTAGGAATGTTACACACATAGAGAAAGTGCTGTCTGAAGCCTATCGAGTGCTAAAGCGTGGAGGAAGGTTCCTGTGCCTTGAACTGAGCCATGTAGACATTCCTGTATTCAAAGAATTCTATGATTTTTACTCATTCTCAGTCATTCCAGCCCTGGGAGAGCTCGTTGCAGGGGATAGAAAATCTTACCAGTACTTGGTGGAGAGTATTCGTCGTTTCCCCCCGCAGGAGAAGTTTGCTTCGATGATTGCGGATGCAGGATTCCAGCAGGTTGAATATGAGAACCTTGTTGGAGGTGTAGTTGCTATTCATTCGGGGTTGAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

303

Amino Acids

33.93

Weight (kDa)

6.47

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	53 - 301	3.1e-84	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	96 - 223	5e-07	Methyltransferase domain
Methyltransf_12	PF08242	101 - 217	5.5e-07	Methyltransferase domain
Methyltransf_25	PF13649	137 - 215	1.4e-10	Methyltransferase domain
Methyltransf_11	PF08241	138 - 219	1.7e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	838
AccB7I	CCANNNNNTGG	1 cut(s)	775
AccI	GTMKAC	1 cut(s)	675
AciI	CCGC	4 cut(s)	466, 512, 803, 830
AcsI	RAATTY	1 cut(s)	695
AcuI	CTGAAG	3 cut(s)	169, 319, 636
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	6 cut(s)	287, 507, 508, 734, 775, 805
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	5 cut(s)	451, 662, 691, 854, 901
AjnI	CCWGG	2 cut(s)	286, 732
AluBI	AGCT	3 cut(s)	129, 374, 742
AluI	AGCT	3 cut(s)	129, 374, 742
Alw21I	GWGCWC	1 cut(s)	744
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	695
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	12, 744
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BbsI	GAAGAC	2 cut(s)	175, 498
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	551
BciT130I	CCWGG	2 cut(s)	288, 734
BfaI	CTAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	838
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmcAI	AGTACT	1 cut(s)	773
Bme1390I	CCNGG	2 cut(s)	288, 734
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	2 cut(s)	288, 734
BmsI	GCATC	4 cut(s)	307, 369, 511, 823
BpiI	GAAGAC	2 cut(s)	175, 498
BpuEI	CTTGAG	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	286, 732, 733
BsaXI	ACNNNNNCTCC	4 cut(s)	729, 759, 864, 894
Bsc4I	CCNNNNNNNGG	6 cut(s)	287, 507, 508, 734, 775, 805
Bse1I	ACTGG	1 cut(s)	769
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	288, 734
BseDI	CCNNGG	3 cut(s)	286, 732, 733
BseGI	GGATG	2 cut(s)	562, 838
BseLI	CCNNNNNNNGG	6 cut(s)	287, 507, 508, 734, 775, 805
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	3 cut(s)	363, 656, 732
BseNI	ACTGG	1 cut(s)	769
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	6 cut(s)	287, 507, 508, 734, 775, 805
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	12, 744
BspACI	CCGC	4 cut(s)	466, 512, 803, 830
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	3 cut(s)	362, 657, 731
BspLI	GGNNCC	1 cut(s)	650
BspMI	ACCTGC	1 cut(s)	838
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	769
BssECI	CCNNGG	3 cut(s)	286, 732, 733
Bst2UI	CCWGG	2 cut(s)	288, 734
Bst4CI	ACNGT	2 cut(s)	37, 55
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	4 cut(s)	349, 414, 665, 718
BstF5I	GGATG	2 cut(s)	562, 838
BstNI	CCWGG	2 cut(s)	288, 734
BstNSI	RCATGY	2 cut(s)	122, 448
BstSCI	CCNGG	2 cut(s)	286, 732
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	2 cut(s)	175, 498
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	562, 838
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	772
CviAII	CATG	3 cut(s)	119, 445, 671
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	4 cut(s)	349, 414, 665, 718
DraI	TTTAAA	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	527
Ecl136II	GAGCTC	1 cut(s)	742
Eco24I	GRGCYC	2 cut(s)	12, 744
Eco53kI	GAGCTC	1 cut(s)	742
Eco57I	CTGAAG	3 cut(s)	169, 319, 636
EcoICRI	GAGCTC	1 cut(s)	742
EcoRI	GAATTC	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	286, 732
EcoT38I	GRGCYC	2 cut(s)	12, 744
FaeI	CATG	3 cut(s)	122, 448, 674
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	3 cut(s)	118, 444, 670
FauI	CCCGC	2 cut(s)	459, 810
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	2 cut(s)	569, 845
FriOI	GRGCYC	2 cut(s)	12, 744
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	122, 448, 674
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	3 cut(s)	277, 347, 840
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	3 cut(s)	77, 355, 676
Hpy188I	TCNGA	3 cut(s)	338, 365, 616
Hpy188III	TCNNGA	2 cut(s)	302, 389
Hpy8I	GTNNAC	3 cut(s)	77, 355, 676
Hpy99I	CGWCG	1 cut(s)	795
HpyAV	CCTTC	4 cut(s)	247, 343, 512, 639
HpyCH4III	ACNGT	2 cut(s)	37, 55
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	7 cut(s)	112, 233, 379, 524, 572, 749, 836
HpyF3I	CTNAG	4 cut(s)	349, 414, 665, 718
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	3 cut(s)	122, 448, 674
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	4 cut(s)	307, 369, 511, 823
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	4 cut(s)	55, 428, 560, 589
MboII	GAAGA	5 cut(s)	164, 175, 404, 419, 503
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	2 cut(s)	12, 744
MluCI	AATT	3 cut(s)	567, 579, 695
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	2 cut(s)	453, 850
MnlI	CCTC	7 cut(s)	54, 148, 208, 473, 508, 635, 866
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	2 cut(s)	138, 212
MslI	CAYNNNNRTG	2 cut(s)	117, 303
MspR9I	CCNGG	2 cut(s)	288, 734
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	288, 734
NlaIII	CATG	3 cut(s)	122, 448, 674
NlaIV	GGNNCC	1 cut(s)	650
NmuCI	GTSAC	2 cut(s)	55, 428
NspI	RCATGY	2 cut(s)	122, 448
PasI	CCCWGGG	1 cut(s)	733
PciI	ACATGT	1 cut(s)	444
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	277, 840
PflMI	CCANNNNNTGG	1 cut(s)	775
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PscI	ACATGT	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	744
Psp6I	CCWGG	2 cut(s)	286, 732
PspGI	CCWGG	2 cut(s)	286, 732
PspN4I	GGNNCC	1 cut(s)	650
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
RseI	CAYNNNNRTG	2 cut(s)	117, 303
SacI	GAGCTC	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	138, 212
SatI	GCNGC	1 cut(s)	102
ScaI	AGTACT	1 cut(s)	773
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	288, 734
SduI	GDGCHC	2 cut(s)	12, 744
SfaNI	GCATC	4 cut(s)	307, 369, 511, 823
SmiMI	CAYNNNNRTG	2 cut(s)	117, 303
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	3 cut(s)	567, 579, 695
SsiI	CCGC	4 cut(s)	466, 512, 803, 830
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	744
StyD4I	CCNGG	2 cut(s)	286, 732
TaaI	ACNGT	2 cut(s)	37, 55
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	5 cut(s)	12, 166, 390, 625, 821
TasI	AATT	3 cut(s)	567, 579, 695
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	2 cut(s)	277, 840
Tru1I	TTAA	2 cut(s)	138, 212
Tru9I	TTAA	2 cut(s)	138, 212
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	2 cut(s)	55, 428
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	2 cut(s)	55, 428
TspDTI	ATGAA	3 cut(s)	230, 308, 878
TspRI	CASTG	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	775
XapI	RAATTY	1 cut(s)	695
XceI	RCATGY	2 cut(s)	122, 448
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.