Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Reverse (-)

25792938 .. 25795209

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGTATCTCACGTGACTCGATGCACAAGCGCCGTGCCACTGGAGGCAAGAAGAAGGCATGGAGGAAGAAGAGAAAGTATGAGCTCGGACGTCAGCCTGCTAATACAAAGCTCTCAAGCAACAAGACTGTAAGGAGAATCCGTGTTCGAGGAGGCAATGTGAAGTGGAGAGCTCTCAGGTTGGATACTGGAAACTTCTCGTGGGGCAGCGAAGCCATTACTCGTAAAACCCGTCTCCTGGATGTTGTATACAATGCCTCAAACAATGAACTTGTTAGAACACAAACTCTGGTGAAAAGCGCCATTGTCCAGGTGGATGCCGCTCCATTTAAGCAGTGGTATCTTCAGCATTATGGGGTTGAAATTGGCAGAAAGAAGAAGTCTGGTGCTGCTAAGAAGGATACCCCAGACGAAGGAGAAGGAACTACCGAGGAAGCAAGGAAGAGTAATCATGTTACCAGGAAGCTTGAGAAGCGTCAGGAAGGTCGCACTCTAGACCCCCATATAGAAGAGCAGTTTGGAGGTGGGAGATTGCTCGCTTGCATATCTTCGCGTCCAGGCCAATGTGGCAGATGTGATGGGTACGTCTTGGAAGGTAAGGAACTTGAGTTTTACATGAAGAAGCTCCAGAGGAAGAAGGGAAAGGGTGCTGGTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

222

Amino Acids

24.93

Weight (kDa)

10.4

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	5 - 197	2.3e-53	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	553
AciI	CCGC	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	329
AcvI	CACGTG	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	2 cut(s)	238, 413
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	4 cut(s)	237, 309, 458, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	5 cut(s)	85, 112, 173, 466, 625
AluI	AGCT	5 cut(s)	85, 112, 173, 466, 625
Alw21I	GWGCWC	2 cut(s)	87, 175
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	4 cut(s)	207, 389, 656, 659
AspLEI	GCGC	2 cut(s)	33, 302
AsuHPI	GGTGA	1 cut(s)	304
BanII	GRGCYC	2 cut(s)	87, 175
BauI	CACGAG	1 cut(s)	199
BbrPI	CACGTG	1 cut(s)	14
Bbv12I	GWGCWC	2 cut(s)	87, 175
BbvI	GCAGC	4 cut(s)	219, 376, 643, 646
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	1 cut(s)	18
BciT130I	CCWGG	4 cut(s)	239, 311, 460, 558
BciVI	GTATCC	2 cut(s)	178, 394
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	494
BfoI	RGCGCY	2 cut(s)	34, 303
BfuI	GTATCC	2 cut(s)	178, 394
BglI	GCCNNNNNGGC	1 cut(s)	567
BisI	GCNGC	5 cut(s)	208, 321, 390, 657, 660
BlsI	GCNGC	5 cut(s)	209, 322, 391, 658, 661
Bme1390I	CCNGG	4 cut(s)	239, 311, 460, 558
BmrFI	CCNGG	4 cut(s)	239, 311, 460, 558
BmsI	GCATC	2 cut(s)	12, 307
BpmI	CTGGAG	2 cut(s)	63, 611
BpuEI	CTTGAG	3 cut(s)	100, 488, 626
BsaAI	YACGTR	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	429
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 144, 157, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 413
Bse1I	ACTGG	2 cut(s)	46, 193
Bse3DI	GCAATG	1 cut(s)	163
BseBI	CCWGG	4 cut(s)	239, 311, 460, 558
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	247, 322
BseLI	CCNNNNNNNGG	2 cut(s)	238, 413
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	46, 193
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	4 cut(s)	219, 376, 643, 646
Bsh1236I	CGCG	1 cut(s)	553
BshFI	GGCC	1 cut(s)	561
BsiHKAI	GWGCWC	2 cut(s)	87, 175
BslI	CCNNNNNNNGG	2 cut(s)	238, 413
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	87, 175
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	553
BspQI	GCTCTTC	1 cut(s)	504
BsrBI	CCGCTC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	46, 193
BssECI	CCNNGG	1 cut(s)	429
BssNAI	GTATAC	1 cut(s)	250
BssNI	GRCGYC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	199
Bst1107I	GTATAC	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	199
Bst2UI	CCWGG	4 cut(s)	239, 311, 460, 558
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	65, 437, 504
BstACI	GRCGYC	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	99, 537, 541
BstDEI	CTNAG	2 cut(s)	176, 393
BstF5I	GGATG	2 cut(s)	247, 322
BstFNI	CGCG	1 cut(s)	553
BstH2I	RGCGCY	2 cut(s)	34, 303
BstHHI	GCGC	2 cut(s)	33, 302
BstMAI	GTCTC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	3 cut(s)	472, 567, 656
BstNI	CCWGG	4 cut(s)	239, 311, 460, 558
BstSCI	CCNGG	4 cut(s)	237, 309, 458, 556
BstUI	CGCG	1 cut(s)	553
BstV1I	GCAGC	4 cut(s)	219, 376, 643, 646
BstZ17I	GTATAC	1 cut(s)	250
BsuI	GTATCC	2 cut(s)	178, 394
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	247, 322
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	2 cut(s)	39, 341
Cac8I	GCNNGC	3 cut(s)	99, 537, 541
CfoI	GCGC	2 cut(s)	33, 302
CseI	GACGC	2 cut(s)	464, 542
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	3 cut(s)	60, 452, 616
CviJI	RGCY	8 cut(s)	85, 97, 112, 173, 215, 466, 561, 625
CviKI_1	RGCY	8 cut(s)	85, 97, 112, 173, 215, 466, 561, 625
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	2 cut(s)	176, 393
Eam1104I	CTCTTC	3 cut(s)	65, 437, 504
EarI	CTCTTC	3 cut(s)	65, 437, 504
Ecl136II	GAGCTC	2 cut(s)	85, 173
Eco24I	GRGCYC	2 cut(s)	87, 175
Eco53kI	GAGCTC	2 cut(s)	85, 173
Eco57I	CTGAAG	1 cut(s)	329
Eco72I	CACGTG	1 cut(s)	14
EcoICRI	GAGCTC	2 cut(s)	85, 173
EcoRII	CCWGG	4 cut(s)	237, 309, 458, 556
EcoT38I	GRGCYC	2 cut(s)	87, 175
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	3 cut(s)	63, 455, 619
FatI	CATG	3 cut(s)	59, 451, 615
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	5 cut(s)	208, 321, 390, 657, 660
FokI	GGATG	2 cut(s)	254, 329
FriOI	GRGCYC	2 cut(s)	87, 175
Fsp4HI	GCNGC	5 cut(s)	208, 321, 390, 657, 660
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	2 cut(s)	32, 301
GluI	GCNGC	5 cut(s)	208, 321, 390, 657, 660
GsuI	CTGGAG	2 cut(s)	63, 611
HaeII	RGCGCY	2 cut(s)	34, 303
HaeIII	GGCC	1 cut(s)	561
HgaI	GACGC	2 cut(s)	464, 542
HhaI	GCGC	2 cut(s)	33, 302
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	63, 455, 619
Hin6I	GCGC	2 cut(s)	31, 300
HinP1I	GCGC	2 cut(s)	31, 300
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	2 cut(s)	17, 138
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	3 cut(s)	479, 494, 628
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	7 cut(s)	49, 391, 407, 413, 476, 587, 631
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	3 cut(s)	13, 91, 585
HpyCH4V	TGCA	3 cut(s)	25, 543, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	472, 567, 656
HpyF3I	CTNAG	2 cut(s)	176, 393
HpySE526I	ACGT	3 cut(s)	13, 91, 585
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	63, 455, 619
HspAI	GCGC	2 cut(s)	31, 300
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	2 cut(s)	328, 630
Lsp1109I	GCAGC	4 cut(s)	219, 376, 643, 646
LweI	GCATC	2 cut(s)	12, 307
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	3 cut(s)	13, 91, 585
MaeIII	GTNAC	2 cut(s)	14, 454
MbiI	CCGCTC	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	87, 175
MluCI	AATT	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	8 cut(s)	38, 57, 143, 146, 268, 424, 515, 624
MseI	TTAA	1 cut(s)	330
MspR9I	CCNGG	4 cut(s)	239, 311, 460, 558
MvaI	CCWGG	4 cut(s)	239, 311, 460, 558
MvnI	CGCG	1 cut(s)	553
MwoI	GCNNNNNNNGC	3 cut(s)	472, 567, 656
NlaIII	CATG	3 cut(s)	63, 455, 619
NmuCI	GTSAC	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	5 cut(s)	209, 322, 391, 658, 661
PleI	GAGTC	1 cut(s)	11
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	14
Psp124BI	GAGCTC	2 cut(s)	87, 175
Psp6I	CCWGG	4 cut(s)	237, 309, 458, 556
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	4 cut(s)	237, 309, 458, 556
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SacI	GAGCTC	2 cut(s)	87, 175
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	5 cut(s)	208, 321, 390, 657, 660
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	4 cut(s)	239, 311, 460, 558
SduI	GDGCHC	2 cut(s)	87, 175
SfaNI	GCATC	2 cut(s)	12, 307
SmlI	CTYRAG	3 cut(s)	115, 467, 605
SmoI	CTYRAG	3 cut(s)	115, 467, 605
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	1 cut(s)	494
SstI	GAGCTC	2 cut(s)	87, 175
StyD4I	CCNGG	4 cut(s)	237, 309, 458, 556
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	3 cut(s)	16, 94, 588
TaqI	TCGA	2 cut(s)	20, 148
TasI	AATT	1 cut(s)	363
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	2 cut(s)	46, 341
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	4 cut(s)	207, 389, 656, 659
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	282, 632
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	46, 341
XbaI	TCTAGA	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 333
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	494
ZraI	GACGTC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.