Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Forward (+)

26038180 .. 26046768

Gene Structure 8589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGTTGAGGGGAAGAGAAAGCTTGATCCGATTGGTGGGCAAACGCCGGCGCTTCCTTCCCCACCGTCAATCACTCCTCTCCTCCCCTACACAGAGCTCTGTGAATCTGTGCACTGATGAAAATGGTAAAATCACTGGAAACATTGAGAGTGTTGTGGGTGGAGGGGTTGCAGATGATGAGAGAGTTACTTGCCCTGTTTGCGGCCAACAAGTCAGTGGCCAAAACAACATCATCAATTCTCATCTCGATGTATGTCTATCAAGGGGAACCAAGCGGAAGATGACCCAGCGCACACTTCTAGAGTTGAACTTTTGCCCAGATTCAAAAGTTCAAGCTCGTTCCCGTGACTTGGAAGAGTTAGGAAATGAGTTATTTCATGCAGTCCATGACGACGGTAGTGTACAGAGTGTTCATGGTTTTTCTGATGACAGCCTCTGTGGTTCATTATTGAATACAATGTCTGATATGCAAAATCAGGTTAATAGTCCATCTAGAAAACCAATCAGTAAGGATAGGGTAAATGCTGCTTTTGATGCTCGCTCACTGGCCCCAAAGAATGAGGTGATGGATTGTGACATGACAATCACAGAGGATGACATATGTAGGGTCATTCTTGAGACTTTTATTGTTGGCCGTAGATTTAGTGATGAAAATGAATTATATCTTGGTGCAAACATTTCTCTTTTAAGAGACCCTGACAATGTTAAAGATCCCAATGCCATTAAGGTTATCTCTTCTGATTCAGGATGCCCTAAAGTGCTTGGTTTTCTCCCTCGCAAGCTGGCTCAGTATTTGTCTCCTCTGATGGAGAGGTACTGCCTACAGTTTGAGGGACGCGTGATCTCTGTTCCAAAGCATGCTATTGATGTTGTTCCTATAGAGATCATGTCCCAGAAGACTGAACCATGTAGTGCCAAGGAATATTATAATGATGAGGCTTTCGTATTTTTGTGGAAAAATGCCCAGCAAGTAATTGAATCTACAAAGTCCTGTCCACCTAGTGCCATAAAGTATCAGGAAAACTTTCGTGTTTTCATGCATGAGGTTTTGAGAAACAATTCTCACCTCTTGATAGATGATGAAAAGAATTTCATGGAGTTGTATACTTCATTGACGGATGATGGTCAGAGGCTATTTGTACGGCTCTATATGCGGAAAGGGCCATGGTTTCGGCTATCTTCTATTTCATACCCAGAAGTAACGGAACCTGAACAAGCAGTTAAAGAGCTATCTGCTACAGGCTATACATCTTGCTTTGGCATTACAAATGAACGCTGTGATGATGAAATAAAAGAGATTCTGCATTTGCTCACTGTATCTGAACTCCGGGAAATGTTATGCATGCTTAGGCAGAATGGCAATCGTGGCATGAGAAAGCAGGATCTTATTGCATCTCTTCTTTCTTTGTACATAGATGAGTCATGCACTTTACTGCCTAATATGGTGTTGGATCGAACAGGTGTTTGTGTTAGGATATCGTCAAAAGCGGAGGCCCTCATCTGGCGTGCTGAGAGACTTTTCTTCCTGAATGGAGAACAGGATTTGTCAGCATTTCTACTAGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCACAGTATCACAACAAATTTTCTCAGGTCGAGATGGCTTGCTTGCTTATGAAGAGGCCATTGAAGTGGCACAGATAATTGATCAAGCTCTTGATGGAAGCAACAATGGAATGGTGTTGAAATGCATAAAGATAGCTGATGCTCGTATGTCTAGTGAAGTAACTCAATTCTTAACTTCTGAATCAATGGCTCCATTTCTGTCCTGCTTCTCTGCTCCGCATGTCTACTCAAAAGTGGTTTTACTAGGAATCTCCTTTCTAGAGCGTGAGCATAGGTATAGTGATGCAATATATTTACTGAAGCGGCTGCTAAAGTGCTTCACTTGTGATGGTCGAAGGGGATACTGGACACTAAGGTTATCAATTGACTTAGAGCACATGGGCTATCTGAATGAGAGCCTTTCAGTTGCCGAAAATGGGTTACTAGATCAATGGGTACGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTAGGAAAACCACCAAGGCGATGGAAAACACCTAGTTTTGCAGAGTCTGTCAAGCGGAAGATTGTGGAGTTAGGTTCATGTACAAGGGAGACCTCTAAATTCCGTGATTGGTATGAAGAGCAGGTTTTATGGAGAAGATGGAGAGCAATGTGGGGTAGAGCGGCTAGCGTTGCAGCATTATGCTGGGGAGGGATGGCAGGGTGTTCATTCAGAGAGTGGCATTTGGTTGACTATTTTTGGGCTTCTTATGTGGGATATTATATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

782

Amino Acids

88.88

Weight (kDa)

6.89

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	205 - 286	3.2e-13	HIRAN domain
FAN1_HTH	PF21315	338 - 415	4.6e-17	FAN1, HTH domain
FAN1_TPR	PF21170	548 - 693	1.5e-13	Fanconi-associated nuclease 1, TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	927
Acc36I	ACCTGC	1 cut(s)	2188
AccBSI	CCGCTC	1 cut(s)	2237
AccI	GTMKAC	2 cut(s)	1103, 1821
AccII	CGCG	1 cut(s)	837
AciI	CCGC	8 cut(s)	201, 274, 1153, 1487, 1814, 1900, 2131, 2237
AclWI	GGATC	4 cut(s)	19, 704, 1389, 1458
AcoI	YGGCCR	3 cut(s)	202, 217, 631
AcsI	RAATTY	3 cut(s)	1087, 1614, 2174
AcuI	CTGAAG	1 cut(s)	1916
AdeI	CACNNNGTG	1 cut(s)	1001
AfaI	GTAC	6 cut(s)	402, 815, 1140, 1409, 2034, 2158
AfiI	CCNNNNNNNGG	5 cut(s)	34, 200, 349, 1500, 2013
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	9 cut(s)	307, 324, 332, 451, 977, 1661, 1717, 2046, 2060
AhlI	ACTAGT	1 cut(s)	1558
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	7 cut(s)	21, 96, 335, 781, 1228, 1685, 1733
AluI	AGCT	7 cut(s)	21, 96, 335, 781, 1228, 1685, 1733
Alw21I	GWGCWC	4 cut(s)	98, 113, 1601, 1974
Alw26I	GTCTC	5 cut(s)	611, 684, 801, 1507, 2159
Alw44I	GTGCAC	2 cut(s)	109, 1597
AlwI	GGATC	4 cut(s)	19, 704, 1389, 1458
AlwNI	CAGNNNCTG	2 cut(s)	435, 2123
AoxI	GGCC	7 cut(s)	202, 217, 546, 631, 1160, 1491, 1653
ApaLI	GTGCAC	2 cut(s)	109, 1597
ApeKI	GCWGC	3 cut(s)	524, 1903, 2249
ApoI	RAATTY	3 cut(s)	1087, 1614, 2174
Asp700I	GAANNNNTTC	2 cut(s)	1023, 1057
AspLEI	GCGC	2 cut(s)	51, 291
AspS9I	GGNCC	3 cut(s)	547, 1160, 1492
AsuC2I	CCSGG	1 cut(s)	1328
AsuHPI	GGTGA	2 cut(s)	574, 1055
AsuNHI	GCTAGC	1 cut(s)	2240
BaeGI	GKGCMC	2 cut(s)	113, 1601
BalI	TGGCCA	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	902
Bbv12I	GWGCWC	4 cut(s)	98, 113, 1601, 1974
BbvI	GCAGC	3 cut(s)	511, 1890, 2261
BceAI	ACGGC	2 cut(s)	618, 1157
BciVI	GTATCC	2 cut(s)	1593, 1931
BclI	TGATCA	1 cut(s)	1678
BcnI	CCSGG	1 cut(s)	1328
BcoDI	GTCTC	5 cut(s)	611, 684, 801, 1507, 2159
BcuI	ACTAGT	1 cut(s)	1558
BfmI	CTRYAG	3 cut(s)	821, 876, 1236
BfoI	RGCGCY	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	2188
BfuI	GTATCC	2 cut(s)	1593, 1931
BisI	GCNGC	6 cut(s)	202, 525, 1901, 1904, 2238, 2250
BlsI	GCNGC	6 cut(s)	203, 526, 1902, 1905, 2239, 2251
Bme1390I	CCNGG	1 cut(s)	1328
BmgT120I	GGNCC	3 cut(s)	547, 1160, 1492
BmiI	GGNNCC	4 cut(s)	268, 549, 1206, 1788
BmrFI	CCNGG	1 cut(s)	1328
BmsI	GCATC	5 cut(s)	523, 737, 1400, 1726, 1870
BmtI	GCTAGC	1 cut(s)	2244
BpiI	GAAGAC	1 cut(s)	902
Bpu10I	CCTNAGC	2 cut(s)	1346, 2077
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	1328
BsaAI	YACGTR	1 cut(s)	2036
BsaI	GGTCTC	2 cut(s)	684, 2159
BsaJI	CCNNGG	3 cut(s)	915, 1163, 2090
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 200, 349, 1500, 2013
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	3 cut(s)	139, 549, 1946
Bse3DI	GCAATG	1 cut(s)	2229
BseDI	CCNNGG	3 cut(s)	915, 1163, 2090
BseGI	GGATG	4 cut(s)	598, 752, 1123, 2274
BseLI	CCNNNNNNNGG	5 cut(s)	34, 200, 349, 1500, 2013
BseMI	GCAATG	1 cut(s)	2229
BseMII	CTCAG	3 cut(s)	800, 1500, 1635
BseNI	ACTGG	3 cut(s)	139, 549, 1946
BseRI	GAGGAG	3 cut(s)	65, 70, 789
BseSI	GKGCMC	2 cut(s)	113, 1601
BseXI	GCAGC	3 cut(s)	511, 1890, 2261
BseYI	CCCAGC	3 cut(s)	285, 963, 2259
Bsh1236I	CGCG	1 cut(s)	837
BshFI	GGCC	7 cut(s)	204, 219, 548, 633, 1162, 1493, 1655
BsiHKAI	GWGCWC	4 cut(s)	98, 113, 1601, 1974
BsiSI	CCGG	2 cut(s)	46, 1327
BslFI	GGGAC	2 cut(s)	846, 874
BslI	CCNNNNNNNGG	5 cut(s)	34, 200, 349, 1500, 2013
BsmAI	GTCTC	5 cut(s)	611, 684, 801, 1507, 2159
BsmFI	GGGAC	2 cut(s)	846, 874
BsnI	GGCC	7 cut(s)	204, 219, 548, 633, 1162, 1493, 1655
Bso31I	GGTCTC	2 cut(s)	684, 2159
Bsp1286I	GDGCHC	4 cut(s)	98, 113, 1601, 1974
Bsp1407I	TGTACA	3 cut(s)	400, 1407, 2156
Bsp143I	GATC	8 cut(s)	24, 709, 840, 882, 1381, 1450, 1678, 2023
Bsp19I	CCATGG	1 cut(s)	1163
BspACI	CCGC	8 cut(s)	201, 274, 1153, 1487, 1814, 1900, 2131, 2237
BspANI	GGCC	7 cut(s)	204, 219, 548, 633, 1162, 1493, 1655
BspCNI	CTCAG	3 cut(s)	799, 1501, 1634
BspFNI	CGCG	1 cut(s)	837
BspLI	GGNNCC	4 cut(s)	268, 549, 1206, 1788
BspMI	ACCTGC	1 cut(s)	2188
BspOI	GCTAGC	1 cut(s)	2244
BspPI	GGATC	4 cut(s)	19, 704, 1389, 1458
BspQI	GCTCTTC	1 cut(s)	2187
BspTNI	GGTCTC	2 cut(s)	684, 2159
BsrBI	CCGCTC	1 cut(s)	2237
BsrDI	GCAATG	1 cut(s)	2229
BsrFI	RCCGGY	1 cut(s)	45
BsrGI	TGTACA	3 cut(s)	400, 1407, 2156
BsrI	ACTGG	3 cut(s)	139, 549, 1946
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	3 cut(s)	915, 1163, 2090
BssMI	GATC	8 cut(s)	24, 709, 840, 882, 1381, 1450, 1678, 2023
BssNAI	GTATAC	1 cut(s)	1104
BssT1I	CCWWGG	3 cut(s)	915, 1163, 2090
Bst1107I	GTATAC	1 cut(s)	1104
Bst4CI	ACNGT	5 cut(s)	65, 395, 825, 1315, 1603
Bst6I	CTCTTC	6 cut(s)	7, 348, 739, 1401, 1644, 2187
BstAUI	TGTACA	3 cut(s)	400, 1407, 2156
BstBAI	YACGTR	1 cut(s)	2036
BstDEI	CTNAG	7 cut(s)	786, 1346, 1509, 1621, 1949, 1966, 2077
BstDSI	CCRYGG	1 cut(s)	1163
BstF5I	GGATG	4 cut(s)	598, 752, 1123, 2274
BstFNI	CGCG	1 cut(s)	837
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 291
BstKTI	GATC	8 cut(s)	27, 712, 843, 885, 1384, 1453, 1681, 2026
BstMAI	GTCTC	5 cut(s)	611, 684, 801, 1507, 2159
BstMBI	GATC	8 cut(s)	24, 709, 840, 882, 1381, 1450, 1678, 2023
BstMWI	GCNNNNNNNGC	6 cut(s)	198, 533, 1150, 1159, 1365, 2246
BstNSI	RCATGY	3 cut(s)	860, 1345, 1820
BstSCI	CCNGG	1 cut(s)	1326
BstSFI	CTRYAG	3 cut(s)	821, 876, 1236
BstSLI	GKGCMC	2 cut(s)	113, 1601
BstUI	CGCG	1 cut(s)	837
BstV1I	GCAGC	3 cut(s)	511, 1890, 2261
BstV2I	GAAGAC	1 cut(s)	902
BstX2I	RGATCY	2 cut(s)	709, 1381
BstXI	CCANNNNNNTGG	2 cut(s)	1663, 2097
BstYI	RGATCY	2 cut(s)	709, 1381
BstZ17I	GTATAC	1 cut(s)	1104
BsuI	GTATCC	2 cut(s)	1593, 1931
BsuRI	GGCC	7 cut(s)	204, 219, 548, 633, 1162, 1493, 1655
BtgI	CCRYGG	1 cut(s)	1163
BtgZI	GCGATG	1 cut(s)	2110
BtsCI	GGATG	4 cut(s)	598, 752, 1123, 2274
BtsIMutI	CAGTG	5 cut(s)	111, 132, 220, 542, 1311
BveI	ACCTGC	1 cut(s)	2188
CaiI	CAGNNNCTG	2 cut(s)	435, 2123
CfoI	GCGC	2 cut(s)	51, 291
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	3 cut(s)	547, 1160, 1492
CseI	GACGC	1 cut(s)	843
Csp6I	GTAC	6 cut(s)	401, 814, 1139, 1408, 2033, 2157
CviQI	GTAC	6 cut(s)	401, 814, 1139, 1408, 2033, 2157
DdeI	CTNAG	7 cut(s)	786, 1346, 1509, 1621, 1949, 1966, 2077
DpnI	GATC	8 cut(s)	26, 711, 842, 884, 1383, 1452, 1680, 2025
DpnII	GATC	8 cut(s)	24, 709, 840, 882, 1381, 1450, 1678, 2023
DraIII	CACNNNGTG	1 cut(s)	1001
EaeI	YGGCCR	3 cut(s)	202, 217, 631
Eam1104I	CTCTTC	6 cut(s)	7, 348, 739, 1401, 1644, 2187
EarI	CTCTTC	6 cut(s)	7, 348, 739, 1401, 1644, 2187
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	3 cut(s)	915, 1163, 2090
Eco24I	GRGCYC	1 cut(s)	98
Eco31I	GGTCTC	2 cut(s)	684, 2159
Eco32I	GATATC	1 cut(s)	1476
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	1916
EcoICRI	GAGCTC	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	1492
EcoRV	GATATC	1 cut(s)	1476
EcoT14I	CCWWGG	3 cut(s)	915, 1163, 2090
EcoT22I	ATGCAT	3 cut(s)	1041, 1343, 1724
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	3 cut(s)	915, 1163, 2090
FaqI	GGGAC	2 cut(s)	846, 874
FauNDI	CATATG	1 cut(s)	599
FbaI	TGATCA	1 cut(s)	1678
FblI	GTMKAC	2 cut(s)	1103, 1821
Fnu4HI	GCNGC	6 cut(s)	202, 525, 1901, 1904, 2238, 2250
FokI	GGATG	4 cut(s)	605, 759, 1130, 2281
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	6 cut(s)	202, 525, 1901, 1904, 2238, 2250
GlaI	GCGC	2 cut(s)	50, 290
GluI	GCNGC	6 cut(s)	202, 525, 1901, 1904, 2238, 2250
GsaI	CCCAGC	3 cut(s)	289, 967, 2263
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	7 cut(s)	204, 219, 548, 633, 1162, 1493, 1655
HapII	CCGG	2 cut(s)	46, 1327
HgaI	GACGC	1 cut(s)	843
HhaI	GCGC	2 cut(s)	51, 291
Hin6I	GCGC	2 cut(s)	49, 289
HinP1I	GCGC	2 cut(s)	49, 289
HincII	GTYRAC	1 cut(s)	2305
HindII	GTYRAC	1 cut(s)	2305
HindIII	AAGCTT	1 cut(s)	19
HpaII	CCGG	2 cut(s)	46, 1327
HphI	GGTGA	2 cut(s)	574, 1055
Hpy166II	GTNNAC	7 cut(s)	111, 401, 995, 1104, 1599, 1822, 2305
Hpy8I	GTNNAC	7 cut(s)	111, 401, 995, 1104, 1599, 1822, 2305
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	65, 1926, 2081
HpyCH4III	ACNGT	5 cut(s)	65, 395, 825, 1315, 1603
HpyCH4IV	ACGT	1 cut(s)	2035
HpyF10VI	GCNNNNNNNGC	6 cut(s)	198, 533, 1150, 1159, 1365, 2246
HpyF3I	CTNAG	7 cut(s)	786, 1346, 1509, 1621, 1949, 1966, 2077
HpySE526I	ACGT	1 cut(s)	2035
HspAI	GCGC	2 cut(s)	49, 289
KroI	GCCGGC	1 cut(s)	45
KroNI	GCCGGC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	1678
Kzo9I	GATC	8 cut(s)	24, 709, 840, 882, 1381, 1450, 1678, 2023
LguI	GCTCTTC	1 cut(s)	2187
LmnI	GCTCC	2 cut(s)	1792, 1816
Lsp1109I	GCAGC	3 cut(s)	511, 1890, 2261
LweI	GCATC	5 cut(s)	523, 737, 1400, 1726, 1870
MaeII	ACGT	1 cut(s)	2035
MaeIII	GTNAC	6 cut(s)	184, 344, 572, 1198, 1756, 2016
MalI	GATC	8 cut(s)	26, 711, 842, 884, 1383, 1452, 1680, 2025
MbiI	CCGCTC	1 cut(s)	2237
MboI	GATC	8 cut(s)	24, 709, 840, 882, 1381, 1450, 1678, 2023
MfeI	CAATTG	1 cut(s)	1959
MflI	RGATCY	2 cut(s)	709, 1381
MhlI	GDGCHC	4 cut(s)	98, 113, 1601, 1974
MlsI	TGGCCA	1 cut(s)	219
MluI	ACGCGT	1 cut(s)	835
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	1427, 2076, 2129
MmeI	TCCRAC	2 cut(s)	1428, 1610
Mox20I	TGGCCA	1 cut(s)	219
Mph1103I	ATGCAT	3 cut(s)	1041, 1343, 1724
MreI	CGCCGGCG	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	45
MroXI	GAANNNNTTC	2 cut(s)	1023, 1057
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	6 cut(s)	480, 686, 705, 723, 1221, 1769
MslI	CAYNNNNRTG	2 cut(s)	246, 1661
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	2 cut(s)	46, 1327
MspR9I	CCNGG	1 cut(s)	1328
MunI	CAATTG	1 cut(s)	1959
MvnI	CGCG	1 cut(s)	837
MwoI	GCNNNNNNNGC	6 cut(s)	198, 533, 1150, 1159, 1365, 2246
NaeI	GCCGGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	1328
NcoI	CCATGG	1 cut(s)	1163
NdeI	CATATG	1 cut(s)	599
NdeII	GATC	8 cut(s)	24, 709, 840, 882, 1381, 1450, 1678, 2023
NgoMIV	GCCGGC	1 cut(s)	45
NheI	GCTAGC	1 cut(s)	2240
NlaIV	GGNNCC	4 cut(s)	268, 549, 1206, 1788
NmuCI	GTSAC	2 cut(s)	344, 572
NsiI	ATGCAT	3 cut(s)	1041, 1343, 1724
NspI	RCATGY	3 cut(s)	860, 1345, 1820
PaeI	GCATGC	2 cut(s)	860, 1345
PciSI	GCTCTTC	1 cut(s)	2187
PdiI	GCCGGC	1 cut(s)	47
PdmI	GAANNNNTTC	2 cut(s)	1023, 1057
PfeI	GAWTC	7 cut(s)	103, 320, 740, 977, 1297, 1778, 1845
PfoI	TCCNGGA	1 cut(s)	1326
PkrI	GCNGC	6 cut(s)	203, 526, 1902, 1905, 2239, 2251
PleI	GAGTC	3 cut(s)	1426, 2075, 2128
PpsI	GAGTC	3 cut(s)	1426, 2075, 2128
Ppu21I	YACGTR	1 cut(s)	2036
PsiI	TTATAA	1 cut(s)	927
Psp124BI	GAGCTC	1 cut(s)	98
PspFI	CCCAGC	3 cut(s)	285, 963, 2259
PspN4I	GGNNCC	4 cut(s)	268, 549, 1206, 1788
PspPI	GGNCC	3 cut(s)	547, 1160, 1492
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
PstNI	CAGNNNCTG	2 cut(s)	435, 2123
PsuI	RGATCY	2 cut(s)	709, 1381
RsaI	GTAC	6 cut(s)	402, 815, 1140, 1409, 2034, 2158
RsaNI	GTAC	6 cut(s)	401, 814, 1139, 1408, 2033, 2157
RseI	CAYNNNNRTG	2 cut(s)	246, 1661
SacI	GAGCTC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	2187
SaqAI	TTAA	6 cut(s)	480, 686, 705, 723, 1221, 1769
SatI	GCNGC	6 cut(s)	202, 525, 1901, 1904, 2238, 2250
Sau3AI	GATC	8 cut(s)	24, 709, 840, 882, 1381, 1450, 1678, 2023
Sau96I	GGNCC	3 cut(s)	547, 1160, 1492
SchI	GAGTC	3 cut(s)	1427, 2076, 2129
ScrFI	CCNGG	1 cut(s)	1328
SduI	GDGCHC	4 cut(s)	98, 113, 1601, 1974
SfaNI	GCATC	5 cut(s)	523, 737, 1400, 1726, 1870
SfcI	CTRYAG	3 cut(s)	821, 876, 1236
SgrAI	CRCCGGYG	1 cut(s)	45
SmiMI	CAYNNNNRTG	2 cut(s)	246, 1661
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SpeI	ACTAGT	1 cut(s)	1558
SphI	GCATGC	2 cut(s)	860, 1345
SsiI	CCGC	8 cut(s)	201, 274, 1153, 1487, 1814, 1900, 2131, 2237
SspI	AATATT	1 cut(s)	923
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	1326
StyI	CCWWGG	3 cut(s)	915, 1163, 2090
TaaI	ACNGT	5 cut(s)	65, 395, 825, 1315, 1603
TaiI	ACGT	1 cut(s)	2038
TaqI	TCGA	4 cut(s)	246, 1453, 1627, 1930
TatI	WGTACW	3 cut(s)	400, 1407, 2156
TauI	GCSGC	3 cut(s)	204, 1903, 2240
TfiI	GAWTC	7 cut(s)	103, 320, 740, 977, 1297, 1778, 1845
Tru1I	TTAA	6 cut(s)	480, 686, 705, 723, 1221, 1769
Tru9I	TTAA	6 cut(s)	480, 686, 705, 723, 1221, 1769
TscAI	CASTG	5 cut(s)	118, 139, 220, 549, 1318
TseFI	GTSAC	2 cut(s)	344, 572
TseI	GCWGC	3 cut(s)	524, 1903, 2249
Tsp45I	GTSAC	2 cut(s)	344, 572
TspGWI	ACGGA	3 cut(s)	1130, 1217, 2168
TspRI	CASTG	5 cut(s)	118, 139, 220, 549, 1318
VneI	GTGCAC	2 cut(s)	109, 1597
XapI	RAATTY	3 cut(s)	1087, 1614, 2174
XbaI	TCTAGA	3 cut(s)	298, 491, 1855
XceI	RCATGY	3 cut(s)	860, 1345, 1820
XcmI	CCANNNNNNNNNTGG	2 cut(s)	212, 2094
XmiI	GTMKAC	2 cut(s)	1103, 1821
XmnI	GAANNNNTTC	2 cut(s)	1023, 1057
Zsp2I	ATGCAT	3 cut(s)	1041, 1343, 1724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.