Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

3491234 .. 3493238

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTACATCGACGTATCCACCACCACCCCCATATTATAGGCTCTACAAAGATTACTTGCAAGACCCTAAATCAGCTCCGGAGCCACCCCCTCCGATTGAAGGCCCATTCATTTGCTATGGTGCCAATCACACTATTGATGAGATACTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAATTGTATCCAAAAGGCCCAAATATTGACTTTAAGAAGGAACTAAGGTCACTTAACAGAGAATTGCAGCTGCACATTTTGGAGCTGGCTGATATTCTTGTAGAGAGACCATCACAATATGCAAGGAGAGTGGAAGAGATATCTCTTATCTTCAAGAACTTGCATCATCTTCTCAACTCATTGCGGCCTCATCAGGCTAGAGCAACGCTAATTCACATTCTAGAACTTCAGATACAACGTCGTAAACAAGCTGTGGAGGATATAAAGAGGAGGAGAGAAGAAGCACGGAGACTTCTCAAGGAGTCTATTGGAACGTTGGAGGACAATGGTACATCTTTTGCTCTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

176

Amino Acids

20.38

Weight (kDa)

8.63

Isoelectric Point (pI)

82.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	3 - 158	3.3e-44	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	1 cut(s)	361
AclI	AACGTT	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	101, 331
AluBI	AGCT	5 cut(s)	77, 156, 247, 262, 428
AluI	AGCT	5 cut(s)	77, 156, 247, 262, 428
Alw26I	GTCTC	2 cut(s)	277, 460
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	3 cut(s)	103, 193, 362
ApeKI	GCWGC	2 cut(s)	244, 247
AspS9I	GGNCC	2 cut(s)	104, 194
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	234, 256
BccI	CCATC	1 cut(s)	295
BciVI	GTATCC	2 cut(s)	27, 195
BcoDI	GTCTC	2 cut(s)	277, 460
BfaI	CTAG	2 cut(s)	375, 398
BfuI	GTATCC	2 cut(s)	27, 195
BisI	GCNGC	3 cut(s)	245, 248, 362
BlsI	GCNGC	3 cut(s)	246, 249, 363
BmgT120I	GGNCC	2 cut(s)	104, 194
BmiI	GGNNCC	2 cut(s)	84, 124
BmsI	GCATC	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	460, 463
BseXI	GCAGC	2 cut(s)	234, 256
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	105, 195, 364
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	2 cut(s)	277, 460
BsnI	GGCC	3 cut(s)	105, 195, 364
Bso31I	GGTCTC	1 cut(s)	277
Bsp13I	TCCGGA	1 cut(s)	79
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	3 cut(s)	105, 195, 364
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	84, 124
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	221
BstMAI	GTCTC	2 cut(s)	277, 460
BstV1I	GCAGC	2 cut(s)	234, 256
BsuI	GTATCC	2 cut(s)	27, 195
BsuRI	GGCC	3 cut(s)	105, 195, 364
Cac8I	GCNNGC	1 cut(s)	264
Cfr13I	GGNCC	2 cut(s)	104, 194
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	507
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	389
EcoRV	GATATC	1 cut(s)	318
FaiI	YATR	5 cut(s)	34, 39, 120, 297, 440
Fnu4HI	GCNGC	3 cut(s)	245, 248, 362
Fsp4HI	GCNGC	3 cut(s)	245, 248, 362
FspBI	CTAG	2 cut(s)	375, 398
GluI	GCNGC	3 cut(s)	245, 248, 362
HaeIII	GGCC	3 cut(s)	105, 195, 364
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	96, 408
Hpy188III	TCNNGA	3 cut(s)	80, 331, 398
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	2 cut(s)	16, 420
HpyAV	CCTTC	2 cut(s)	95, 208
HpyCH4IV	ACGT	3 cut(s)	14, 415, 491
HpyCH4V	TGCA	5 cut(s)	61, 244, 250, 299, 340
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	3 cut(s)	14, 415, 491
Kpn2I	TCCGGA	1 cut(s)	79
LmnI	GCTCC	3 cut(s)	82, 82, 259
LpnPI	CCDG	4 cut(s)	93, 152, 248, 356
Lsp1109I	GCAGC	2 cut(s)	234, 256
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	375, 398
MaeII	ACGT	3 cut(s)	14, 415, 491
MaeIII	GTNAC	1 cut(s)	225
MboII	GAAGA	5 cut(s)	173, 319, 323, 338, 467
MfeI	CAATTG	1 cut(s)	179
MluCI	AATT	3 cut(s)	179, 239, 387
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	6 cut(s)	102, 375, 427, 438, 441, 490
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	2 cut(s)	210, 231
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	84, 124
NmuCI	GTSAC	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	246, 249, 363
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp1406I	AACGTT	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	84, 124
PspPI	GGNCC	2 cut(s)	104, 194
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	210, 231
SatI	GCNGC	3 cut(s)	245, 248, 362
Sau96I	GGNCC	2 cut(s)	104, 194
SchI	GAGTC	1 cut(s)	488
SetI	ASST	9 cut(s)	17, 79, 158, 227, 249, 264, 418, 430, 494
SfaNI	GCATC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	179, 239, 387
SsiI	CCGC	1 cut(s)	361
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	2 cut(s)	375, 398
TaiI	ACGT	3 cut(s)	17, 418, 494
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	179, 239, 387
TauI	GCSGC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	210, 231
Tru9I	TTAA	2 cut(s)	210, 231
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	2 cut(s)	244, 247
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	478
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	2 cut(s)	375, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.