pycom15g02580

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002011
Physical Location & Seq
Reverse (-)
1588253 .. 1589762
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
ATGAAATTTGAGTTAAAGAGATGGAGTTCCATTTCCCCGCTTCAATTGAAAACCAAATCAGCGGGACGTTTTTGTATATTTCCCAAATCAAAGTCCGATAACGCTGAATCAGGAAAAGCACCAGTTTATCTCAATGTATATGATTTGACTCCCATGAATGGCTATGTCTATTGGGCAGGCTTTGGAATTTTTCACTCTGGTGTTGAAGTTCATGGTGTAGAATATGCATTCGGAGCACATGACTACCCTACAAGTGGCGTTTTTGAGGTTGAACCTCGCCAATGCCCAGGGTTCAAGTTCAGGAAGTCTATTTTAATCGGAACAACATGCTTGGACCCTACTCAGGTTCGAGAGTTTATGGAGCGCCAGTCTTTGAGCTATAACGGTGATACATATCACCTGATTGTCAAGAACTGCAACCATTTCTGCAGGGATATTTGTCGCAAGCTCACTGGAAAATCAATTCCTAAATGGGTGAATCGACTGGCAAGAATAGGTTCAGTATGCAACTGCGTACTTCCGGAATCTCTGAAGATTTCCGCTGTACAACACGACCCAAACTGCCAACCATACGACAGCGAGAAGAGGAGCTTGAGAAGCACCTTCAGTTGCCTGTCTTCCATCTCGATGAGGCAGAAGCAATTATCATCATCTTCGTTATTTCTGCAGTCGCCCCTGAAAGGCTGCTTACCGCCATGGGAATTGCGAAGGTCGTTGAATGGTTCGTTGAAAGAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

247

Amino Acids

27.89

Weight (kDa)

9.38

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 41 - 176 8.7e-51 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 4 cut(s) 38, 62, 540, 692
AcsI RAATTY 2 cut(s) 5, 186
AcuI CTGAAG 2 cut(s) 551, 589
AfaI GTAC 2 cut(s) 516, 546
AfiI CCNNNNNNNGG 4 cut(s) 158, 254, 343, 680
AgsI TTSAA 7 cut(s) 44, 49, 206, 272, 295, 718, 730
AjnI CCWGG 1 cut(s) 286
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 3 cut(s) 378, 448, 591
AluI AGCT 3 cut(s) 378, 448, 591
Alw21I GWGCWC 1 cut(s) 238
Aor13HI TCCGGA 1 cut(s) 520
ApeKI GCWGC 1 cut(s) 684
ApoI RAATTY 2 cut(s) 5, 186
Asp700I GAANNNNTTC 1 cut(s) 496
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 389, 398, 487
AvaII GGWCC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 671
BccI CCATC 2 cut(s) 15, 629
BciT130I CCWGG 1 cut(s) 288
BfmI CTRYAG 2 cut(s) 427, 665
BfoI RGCGCY 1 cut(s) 367
BisI GCNGC 1 cut(s) 685
BlsI GCNGC 1 cut(s) 686
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 613
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 286, 287, 695
BsaWI WCCGGW 1 cut(s) 520
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 254, 343, 680
Bse1I ACTGG 4 cut(s) 122, 367, 457, 489
Bse8I GATNNNNATC 1 cut(s) 393
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 286, 287, 695
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 4 cut(s) 158, 254, 343, 680
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 4 cut(s) 122, 367, 457, 489
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 1 cut(s) 671
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 521
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 4 cut(s) 158, 254, 343, 680
BsmFI GGGAC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 238
Bsp13I TCCGGA 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 544
Bsp19I CCATGG 1 cut(s) 695
BspACI CCGC 4 cut(s) 38, 62, 540, 692
BspCNI CTCAG 1 cut(s) 355
BspEI TCCGGA 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 2 cut(s) 431, 669
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 4 cut(s) 122, 367, 457, 489
BssECI CCNNGG 3 cut(s) 286, 287, 695
BssT1I CCWWGG 1 cut(s) 695
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 578
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 2 cut(s) 178, 446
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 695
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 1 cut(s) 366
BstMWI GCNNNNNNNGC 2 cut(s) 233, 597
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 2 cut(s) 427, 665
BstV1I GCAGC 1 cut(s) 671
BstV2I GAAGAC 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 695
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 178, 446
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 515, 545
CviAII CATG 5 cut(s) 154, 212, 239, 327, 696
CviJI RGCY 6 cut(s) 162, 180, 378, 448, 591, 684
CviKI_1 RGCY 6 cut(s) 162, 180, 378, 448, 591, 684
CviQI GTAC 2 cut(s) 515, 545
DdeI CTNAG 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 695
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 2 cut(s) 551, 589
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 695
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 695
FaeI CATG 5 cut(s) 157, 215, 242, 330, 699
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 1 cut(s) 78
FatI CATG 5 cut(s) 153, 211, 238, 326, 695
FauI CCCGC 2 cut(s) 45, 55
Fnu4HI GCNGC 1 cut(s) 685
Fsp4HI GCNGC 1 cut(s) 685
GlaI GCGC 1 cut(s) 365
GluI GCNGC 1 cut(s) 685
HaeII RGCGCY 1 cut(s) 367
HapII CCGG 1 cut(s) 521
HhaI GCGC 1 cut(s) 366
Hin1II CATG 5 cut(s) 157, 215, 242, 330, 699
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 4 cut(s) 107, 148, 478, 524
HpaII CCGG 1 cut(s) 521
HphI GGTGA 3 cut(s) 389, 398, 487
Hpy188I TCNGA 4 cut(s) 97, 233, 320, 531
Hpy188III TCNNGA 6 cut(s) 111, 301, 350, 409, 521, 625
HpyAV CCTTC 2 cut(s) 613, 702
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 5 cut(s) 227, 417, 429, 507, 667
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 597
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 5 cut(s) 157, 215, 242, 330, 699
HspAI GCGC 1 cut(s) 364
Kpn2I TCCGGA 1 cut(s) 520
LmnI GCTCC 3 cut(s) 233, 361, 588
Lsp1109I GCAGC 1 cut(s) 671
MaeII ACGT 1 cut(s) 67
MboII GAAGA 4 cut(s) 544, 595, 609, 645
MfeI CAATTG 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 6 cut(s) 5, 44, 186, 462, 641, 701
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 4 cut(s) 259, 285, 579, 624
Mph1103I ATGCAT 1 cut(s) 229
MroI TCCGGA 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 2 cut(s) 14, 314
MslI CAYNNNNRTG 2 cut(s) 198, 626
MspA1I CMGCKG 2 cut(s) 62, 542
MspI CCGG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 288
MunI CAATTG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 233, 597
NcoI CCATGG 1 cut(s) 695
NlaIII CATG 5 cut(s) 157, 215, 242, 330, 699
NlaIV GGNNCC 1 cut(s) 336
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 1 cut(s) 330
OliI CACNNNNGTG 1 cut(s) 198
PasI CCCWGGG 1 cut(s) 287
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 3 cut(s) 107, 478, 524
PkrI GCNGC 1 cut(s) 686
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 334
PstI CTGCAG 2 cut(s) 431, 669
RsaI GTAC 2 cut(s) 516, 546
RsaNI GTAC 2 cut(s) 515, 545
RseI CAYNNNNRTG 2 cut(s) 198, 626
SaqAI TTAA 2 cut(s) 14, 314
SatI GCNGC 1 cut(s) 685
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 238
SfcI CTRYAG 2 cut(s) 427, 665
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 2 cut(s) 198, 626
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 6 cut(s) 5, 44, 186, 462, 641, 701
SsiI CCGC 4 cut(s) 38, 62, 540, 692
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 695
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 1 cut(s) 70
TaqI TCGA 3 cut(s) 349, 481, 626
TasI AATT 6 cut(s) 5, 44, 186, 462, 641, 701
TatI WGTACW 1 cut(s) 544
TfiI GAWTC 3 cut(s) 107, 478, 524
Tru1I TTAA 2 cut(s) 14, 314
Tru9I TTAA 2 cut(s) 14, 314
TscAI CASTG 1 cut(s) 457
TseI GCWGC 1 cut(s) 684
TspDTI ATGAA 3 cut(s) 17, 170, 200
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 2 cut(s) 5, 186
XceI RCATGY 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 496
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.