Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Forward (+)

4518011 .. 4521014

Gene Structure 3004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGGCTCAGATTCAAGTTCAGCAGCAGCCTCCCGCGAGCGGCCCAAACAGCGCGGCGGCGAACGCCGGCGGTGCCCCCCCGCAGTTCGTGTCGACGTCGCTGTACGTTGGGGATCTTGACCAGAATGTTACCGACTCGCAGCTGTACGATCTGTTCAACCAGGTCGGTCAGGTCGTGTCGGTGAGGGTCTGCAGGGACTTGAGCACTGGCCGATCTCTCGGCTATGGTTACGTCAACTATAGCGGTCCTCAGGATGCTGCGAGGGCACTGGAAGTTCTGAACTTCACTCCACTGAATAACAAATCAATCAGGATTATGTATTCGCACCGGGACCCTAGTATTAGAAAGAGTGGAACCGGAAACATATTTATCAAGAATCTGGACAAGGCAATTGACCATAAAGCATTGCATGAGACATTTTCTTCGTTTGGAAATATTCTTTCTTGCAAGATAGCCACTGATGCCACTGGCCAGTCAAAGGGCTATGGTTTTGTGCAATTTGATAGTGAGGAAGCTGCTCAGAGTGCAATAGATAAGTTAAATGGGATGCTGCTTAATGATAAGCCAGTGTTTGTAGGACACTTTCTCCGCAAGCAGGAGAGAGACGGAAATTGGAATAAGACAAAATTTAACAATGTCTACATCAAGAATATATCTGAATCTACAACAGAGGATGAGTTGAGGAAGATTTTTGGCGAACATGGACAAATTACCAGTGTTGTAGTGATGAGGGATGGGGAAGGCAAATCAAGGTGTTTTGGTTTTGTTAACTTTGAGGATCCGGAACCTGCTGGTACAGCTGTTGAAGCTTTGAATGGAAAGAAGATCGATGAGAAGGAGTGGTATGTTGGGAAAGCTCAGAAGAAGTACGAGAGAGAGCTTGAACTGAAGGAGAGATTTGAGCAGAGCATGAAGGAAGCCAGCGATAAGTTTCAGGGTGTCAATTTGTATATCAAGAACTTGGATGACAGCATCAGTGATGAAAAACTCAAGGAATTATTCTCGGAGTATGGTACAGTTAGTTCATGCAAGGTTATGCGTGATCCTGATGGAAACAGCAGAGGTTCTGGTTTCGTTGCCTTCTCAACTGCTGAAGAAGCTTCTCGAGCTCTTGCTGAGATGAACGGCAAAATGGTTGTTAGTAAGCCTCTGTATGTTGCACTTGCGCAAAGGAAAGAAGAAAGAAGAGCTAGGTTACAGGCTCAGTTTTCGCAAATGAGGCCAGTTGCTATGGCACCTTCAGTGGCTCCACGTGGTATGCCAATGTACCCTCCTGGTGCTCCAGGTCTAGGGCAACAATTTATGTACGGGCAAGCACCTCCAGCTATAATTCCTCCACAAGCTGGATTTGGTTACCAACAGCAGCTTGTGCCTGGATTAAGGCCTGGTGGTGGACCAATGCCAAACTTCTTTGTTCCAATGGTCCAGCAGGGTCAGCAGGGCCAACGCCCAGGAGGTCGACGTGGTGCAGGTCCAGTGCAGCCAAACCAACAGCCTCTGCCAATGATGCAGCAGCATATGCTGCCTAGGGGACGTGTGTACCGCTATCCACCTGGTCGCAACATGCAGGAAGTTCCATTTTCTGGAGTCGGAAGTGGTATGCTTCCAGTCCCATATGACATGGGTGCCATTCCTATGCGTGATGCTGCAGGTGGGCAGGGTGTTCCGGCTTTGGCCACTGCCCTTGCAAATGCCTCAACTGAACAGCAAAGGACGATGCTTGGTGAAGCCTTGTATCCCCTCGTTGACCAGCTGGAGCATGAGTCGGCAGCTAAGGTGACAGGCATGCTTTTGGAGATGGACCAGACCGAAGTTTTGCATTTGCTTGAGTCACCAGAGGCTCTAAAGGCGAAGGTCGCAGAGGCCATGGATGTTCTGAGGAATGTTGCCCAACAGCAGGCTAACAGCAGCGCCGACCAACTGTCTTCATTGTCTCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

648

Amino Acids

70.76

Weight (kDa)

6.51

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	34 - 104	7e-19	RNA recognition motif
RRM_1	PF00076	122 - 189	8.1e-22	RNA recognition motif
RRM_1	PF00076	213 - 281	2.7e-21	RNA recognition motif
RRM_1	PF00076	316 - 384	2e-20	RNA recognition motif
MLLE	PF00658	561 - 626	3.5e-28	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1640
AatII	GACGTC	1 cut(s)	98
Acc16I	TGCGCA	1 cut(s)	1167
Acc36I	ACCTGC	3 cut(s)	796, 1460, 1640
AccB1I	GGYRCC	3 cut(s)	71, 1234, 1625
AccB7I	CCANNNNNTGG	2 cut(s)	1343, 1583
AccBSI	CCGCTC	1 cut(s)	39
AccI	GTMKAC	3 cut(s)	92, 639, 1459
AccII	CGCG	2 cut(s)	35, 53
AccIII	TCCGGA	1 cut(s)	781
AciI	CCGC	9 cut(s)	33, 39, 53, 56, 69, 80, 243, 589, 1543
AclWI	GGATC	4 cut(s)	120, 773, 786, 1037
AcoI	YGGCCR	3 cut(s)	208, 469, 1674
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	3 cut(s)	908, 1113, 1224
AcvI	CACGTG	1 cut(s)	1253
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	8 cut(s)	104, 146, 796, 869, 1015, 1268, 1307, 1541
AfiI	CCNNNNNNNGG	8 cut(s)	38, 478, 595, 1289, 1343, 1391, 1583, 1897
AflIII	ACRYGT	1 cut(s)	1534
AgsI	TTSAA	6 cut(s)	14, 157, 806, 814, 884, 1940
AhdI	GACNNNNNGTC	1 cut(s)	1921
AjiI	CACGTC	2 cut(s)	1463, 1535
AjnI	CCWGG	7 cut(s)	159, 1273, 1282, 1372, 1384, 1450, 1552
Alw21I	GWGCWC	3 cut(s)	206, 1111, 1282
Alw26I	GTCTC	3 cut(s)	407, 597, 1938
AlwI	GGATC	4 cut(s)	120, 773, 786, 1037
AlwNI	CAGNNNCTG	1 cut(s)	1498
Ama87I	CYCGRG	1 cut(s)	1104
Aor13HI	TCCGGA	1 cut(s)	781
AoxI	GGCC	8 cut(s)	40, 208, 469, 1220, 1382, 1441, 1674, 1863
ApoI	RAATTY	1 cut(s)	626
ArsI	GACNNNNNNTTYG	4 cut(s)	406, 438, 1798, 1830
AspA2I	CCTAGG	1 cut(s)	1526
AspLEI	GCGC	3 cut(s)	53, 1168, 1913
AspS9I	GGNCC	8 cut(s)	41, 245, 331, 1394, 1423, 1441, 1472, 1801
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	4 cut(s)	193, 1736, 1789, 1824
AvaI	CYCGRG	1 cut(s)	1104
AvaII	GGWCC	6 cut(s)	245, 331, 1394, 1423, 1472, 1801
AvrII	CCTAGG	1 cut(s)	1526
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	2 cut(s)	76, 268
BaeI	ACNNNNGTAYC	4 cut(s)	786, 819, 1523, 1556
BalI	TGGCCA	2 cut(s)	471, 1676
BamHI	GGATCC	1 cut(s)	778
BanI	GGYRCC	3 cut(s)	71, 1234, 1625
BanII	GRGCYC	1 cut(s)	1111
BbrPI	CACGTG	1 cut(s)	1253
BbsI	GAAGAC	1 cut(s)	1917
Bbv12I	GWGCWC	3 cut(s)	206, 1111, 1282
BccI	CCATC	3 cut(s)	728, 1043, 1792
BceAI	ACGGC	1 cut(s)	1141
BciT130I	CCWGG	7 cut(s)	161, 1275, 1284, 1374, 1386, 1452, 1554
BciVI	GTATCC	1 cut(s)	1746
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	3 cut(s)	407, 597, 1938
BfaI	CTAG	4 cut(s)	336, 1191, 1289, 1527
BfmI	CTRYAG	3 cut(s)	190, 238, 1647
BfoI	RGCGCY	1 cut(s)	1914
BfuAI	ACCTGC	3 cut(s)	796, 1460, 1640
BfuI	GTATCC	1 cut(s)	1746
BlnI	CCTAGG	1 cut(s)	1526
Bme1390I	CCNGG	8 cut(s)	161, 329, 1275, 1284, 1374, 1386, 1452, 1554
Bme18I	GGWCC	6 cut(s)	245, 331, 1394, 1423, 1472, 1801
BmeRI	GACNNNNNGTC	1 cut(s)	1921
BmeT110I	CYCGRG	1 cut(s)	1104
BmgBI	CACGTC	2 cut(s)	1463, 1535
BmgT120I	GGNCC	8 cut(s)	41, 245, 331, 1394, 1423, 1441, 1472, 1801
BmiI	GGNNCC	9 cut(s)	73, 332, 333, 355, 780, 786, 1236, 1248, 1627
BmrFI	CCNGG	8 cut(s)	161, 329, 1275, 1284, 1374, 1386, 1452, 1554
BmsI	GCATC	7 cut(s)	244, 451, 537, 981, 1497, 1633, 1707
BpiI	GAAGAC	1 cut(s)	1917
BpmI	CTGGAG	4 cut(s)	1266, 1305, 1605, 1775
Bpu10I	CCTNAGC	1 cut(s)	1773
BpuEI	CTTGAG	3 cut(s)	220, 974, 1847
BpuMI	CCSGG	1 cut(s)	329
Bsa29I	ATCGAT	1 cut(s)	828
BsaAI	YACGTR	1 cut(s)	1253
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	1450, 1526, 1866
BsaWI	WCCGGW	2 cut(s)	356, 781
BsaXI	ACNNNNNCTCC	4 cut(s)	570, 600, 1748, 1778
Bsc4I	CCNNNNNNNGG	8 cut(s)	38, 478, 595, 1289, 1343, 1391, 1583, 1897
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	9 cut(s)	211, 273, 472, 472, 566, 714, 1223, 1475, 1607
Bse21I	CCTNAGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	404
BseAI	TCCGGA	1 cut(s)	781
BseBI	CCWGG	7 cut(s)	161, 1275, 1284, 1374, 1386, 1452, 1554
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	1450, 1526, 1866
BseGI	GGATG	6 cut(s)	259, 552, 679, 739, 970, 1876
BseLI	CCNNNNNNNGG	8 cut(s)	38, 478, 595, 1289, 1343, 1391, 1583, 1897
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	7 cut(s)	20, 263, 533, 872, 1107, 1217, 1868
BseNI	ACTGG	9 cut(s)	211, 273, 472, 472, 566, 714, 1223, 1475, 1607
BseSI	GKGCMC	2 cut(s)	76, 268
BsgI	GTGCAG	2 cut(s)	1488, 1499
Bsh1236I	CGCG	2 cut(s)	35, 53
BshFI	GGCC	8 cut(s)	42, 210, 471, 1222, 1384, 1443, 1676, 1865
BshNI	GGYRCC	3 cut(s)	71, 1234, 1625
BshVI	ATCGAT	1 cut(s)	828
BsiHKAI	GWGCWC	3 cut(s)	206, 1111, 1282
BsiHKCI	CYCGRG	1 cut(s)	1104
BsiSI	CCGG	5 cut(s)	66, 328, 357, 782, 1667
BslFI	GGGAC	4 cut(s)	209, 344, 1545, 1595
BslI	CCNNNNNNNGG	8 cut(s)	38, 478, 595, 1289, 1343, 1391, 1583, 1897
BsmAI	GTCTC	3 cut(s)	407, 597, 1938
BsmBI	CGTCTC	1 cut(s)	597
BsmFI	GGGAC	4 cut(s)	209, 344, 1545, 1595
BsnI	GGCC	8 cut(s)	42, 210, 471, 1222, 1384, 1443, 1676, 1865
BsoBI	CYCGRG	1 cut(s)	1104
Bsp1286I	GDGCHC	5 cut(s)	76, 206, 268, 1111, 1282
Bsp13I	TCCGGA	1 cut(s)	781
Bsp143I	GATC	6 cut(s)	112, 148, 212, 778, 825, 1042
Bsp19I	CCATGG	1 cut(s)	1866
BspACI	CCGC	9 cut(s)	33, 39, 53, 56, 69, 80, 243, 589, 1543
BspANI	GGCC	8 cut(s)	42, 210, 471, 1222, 1384, 1443, 1676, 1865
BspCNI	CTCAG	7 cut(s)	19, 262, 532, 871, 1108, 1216, 1869
BspDI	ATCGAT	1 cut(s)	828
BspEI	TCCGGA	1 cut(s)	781
BspFNI	CGCG	2 cut(s)	35, 53
BspLI	GGNNCC	9 cut(s)	73, 332, 333, 355, 780, 786, 1236, 1248, 1627
BspMAI	CTGCAG	2 cut(s)	194, 1651
BspMI	ACCTGC	3 cut(s)	796, 1460, 1640
BspPI	GGATC	4 cut(s)	120, 773, 786, 1037
BspQI	GCTCTTC	1 cut(s)	1180
BspT107I	GGYRCC	3 cut(s)	71, 1234, 1625
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	9 cut(s)	211, 273, 472, 472, 566, 714, 1223, 1475, 1607
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	1450, 1526, 1866
BssMI	GATC	6 cut(s)	112, 148, 212, 778, 825, 1042
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	2 cut(s)	1526, 1866
Bst2UI	CCWGG	7 cut(s)	161, 1275, 1284, 1374, 1386, 1452, 1554
Bst4CI	ACNGT	2 cut(s)	1018, 1923
Bst6I	CTCTTC	1 cut(s)	1180
BstACI	GRCGYC	1 cut(s)	95
BstAPI	GCANNNNNTGC	3 cut(s)	1369, 1519, 1522
BstBAI	YACGTR	1 cut(s)	1253
BstC8I	GCNNGC	7 cut(s)	37, 67, 593, 922, 1314, 1787, 1899
BstDEI	CTNAG	8 cut(s)	6, 249, 519, 858, 1116, 1203, 1773, 1877
BstDSI	CCRYGG	1 cut(s)	1866
BstEII	GGTNACC	1 cut(s)	1352
BstF5I	GGATG	6 cut(s)	259, 552, 679, 739, 970, 1876
BstFNI	CGCG	2 cut(s)	35, 53
BstH2I	RGCGCY	1 cut(s)	1914
BstHHI	GCGC	3 cut(s)	53, 1168, 1913
BstKTI	GATC	6 cut(s)	115, 151, 215, 781, 828, 1045
BstMAI	GTCTC	3 cut(s)	407, 597, 1938
BstMBI	GATC	6 cut(s)	112, 148, 212, 778, 825, 1042
BstNI	CCWGG	7 cut(s)	161, 1275, 1284, 1374, 1386, 1452, 1554
BstNSI	RCATGY	2 cut(s)	1567, 1789
BstPI	GGTNACC	1 cut(s)	1352
BstSCI	CCNGG	8 cut(s)	159, 327, 1273, 1282, 1372, 1384, 1450, 1552
BstSFI	CTRYAG	3 cut(s)	190, 238, 1647
BstSLI	GKGCMC	2 cut(s)	76, 268
BstUI	CGCG	2 cut(s)	35, 53
BstV2I	GAAGAC	1 cut(s)	1917
BstX2I	RGATCY	2 cut(s)	112, 778
BstYI	RGATCY	2 cut(s)	112, 778
Bsu15I	ATCGAT	1 cut(s)	828
Bsu36I	CCTNAGG	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	1746
BsuRI	GGCC	8 cut(s)	42, 210, 471, 1222, 1384, 1443, 1676, 1865
BsuTUI	ATCGAT	1 cut(s)	828
BtgI	CCRYGG	1 cut(s)	1866
BtrI	CACGTC	2 cut(s)	1463, 1535
BtsCI	GGATG	6 cut(s)	259, 552, 679, 739, 970, 1876
BtsI	GCAGTG	1 cut(s)	1677
BveI	ACCTGC	3 cut(s)	796, 1460, 1640
Cac8I	GCNNGC	7 cut(s)	37, 67, 593, 922, 1314, 1787, 1899
CaiI	CAGNNNCTG	1 cut(s)	1498
CfoI	GCGC	3 cut(s)	53, 1168, 1913
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	8 cut(s)	41, 245, 331, 1394, 1423, 1441, 1472, 1801
ClaI	ATCGAT	1 cut(s)	828
CsiI	ACCWGGT	2 cut(s)	159, 1552
Csp6I	GTAC	8 cut(s)	103, 145, 795, 868, 1014, 1267, 1306, 1540
CspCI	CAANNNNNGTGG	2 cut(s)	1666, 1701
CviAII	CATG	9 cut(s)	410, 701, 910, 1026, 1564, 1621, 1760, 1786, 1867
CviQI	GTAC	8 cut(s)	103, 145, 795, 868, 1014, 1267, 1306, 1540
DdeI	CTNAG	8 cut(s)	6, 249, 519, 858, 1116, 1203, 1773, 1877
DpnI	GATC	6 cut(s)	114, 150, 214, 780, 827, 1044
DpnII	GATC	6 cut(s)	112, 148, 212, 778, 825, 1042
DriI	GACNNNNNGTC	1 cut(s)	1921
EaeI	YGGCCR	3 cut(s)	208, 469, 1674
Eam1104I	CTCTTC	1 cut(s)	1180
Eam1105I	GACNNNNNGTC	1 cut(s)	1921
EarI	CTCTTC	1 cut(s)	1180
Ecl136II	GAGCTC	1 cut(s)	1109
Eco130I	CCWWGG	2 cut(s)	1526, 1866
Eco147I	AGGCCT	1 cut(s)	1384
Eco24I	GRGCYC	1 cut(s)	1111
Eco47I	GGWCC	6 cut(s)	245, 331, 1394, 1423, 1472, 1801
Eco53kI	GAGCTC	1 cut(s)	1109
Eco57I	CTGAAG	3 cut(s)	908, 1113, 1224
Eco72I	CACGTG	1 cut(s)	1253
Eco81I	CCTNAGG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	1104
Eco91I	GGTNACC	1 cut(s)	1352
EcoICRI	GAGCTC	1 cut(s)	1109
EcoO109I	RGGNCCY	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	1352
EcoRII	CCWGG	7 cut(s)	159, 1273, 1282, 1372, 1384, 1450, 1552
EcoT14I	CCWWGG	2 cut(s)	1526, 1866
EcoT38I	GRGCYC	1 cut(s)	1111
ErhI	CCWWGG	2 cut(s)	1526, 1866
Esp3I	CGTCTC	1 cut(s)	597
FaeI	CATG	9 cut(s)	413, 704, 913, 1029, 1567, 1624, 1763, 1789, 1870
FaqI	GGGAC	4 cut(s)	209, 344, 1545, 1595
FatI	CATG	9 cut(s)	409, 700, 909, 1025, 1563, 1620, 1759, 1785, 1866
FauI	CCCGC	2 cut(s)	40, 87
FauNDI	CATATG	2 cut(s)	1518, 1615
FblI	GTMKAC	3 cut(s)	92, 639, 1459
FokI	GGATG	6 cut(s)	266, 559, 686, 746, 977, 1883
FriOI	GRGCYC	1 cut(s)	1111
FspBI	CTAG	4 cut(s)	336, 1191, 1289, 1527
FspI	TGCGCA	1 cut(s)	1167
GlaI	GCGC	3 cut(s)	52, 1167, 1912
GsuI	CTGGAG	4 cut(s)	1266, 1305, 1605, 1775
HaeII	RGCGCY	1 cut(s)	1914
HaeIII	GGCC	8 cut(s)	42, 210, 471, 1222, 1384, 1443, 1676, 1865
HapII	CCGG	5 cut(s)	66, 328, 357, 782, 1667
HhaI	GCGC	3 cut(s)	53, 1168, 1913
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	9 cut(s)	413, 704, 913, 1029, 1567, 1624, 1763, 1789, 1870
Hin6I	GCGC	3 cut(s)	51, 1166, 1911
HinP1I	GCGC	3 cut(s)	51, 1166, 1911
HincII	GTYRAC	5 cut(s)	93, 235, 769, 1460, 1747
HindII	GTYRAC	5 cut(s)	93, 235, 769, 1460, 1747
HindIII	AAGCTT	2 cut(s)	807, 1098
HinfI	GANTC	7 cut(s)	10, 134, 376, 659, 1587, 1763, 1829
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	5 cut(s)	66, 328, 357, 782, 1667
HphI	GGTGA	4 cut(s)	193, 1736, 1789, 1824
Hpy166II	GTNNAC	8 cut(s)	93, 235, 640, 769, 1394, 1460, 1540, 1747
Hpy188I	TCNGA	8 cut(s)	9, 279, 522, 658, 861, 1006, 1592, 1878
Hpy8I	GTNNAC	8 cut(s)	93, 235, 640, 769, 1394, 1460, 1540, 1747
Hpy99I	CGWCG	3 cut(s)	97, 100, 1464
HpyAV	CCTTC	7 cut(s)	734, 829, 883, 907, 1090, 1248, 1846
HpyCH4III	ACNGT	2 cut(s)	1018, 1923
HpyCH4IV	ACGT	6 cut(s)	95, 105, 231, 1252, 1462, 1534
HpyF3I	CTNAG	8 cut(s)	6, 249, 519, 858, 1116, 1203, 1773, 1877
HpySE526I	ACGT	6 cut(s)	95, 105, 231, 1252, 1462, 1534
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	9 cut(s)	413, 704, 913, 1029, 1567, 1624, 1763, 1789, 1870
HspAI	GCGC	3 cut(s)	51, 1166, 1911
KflI	GGGWCCC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	781
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	6 cut(s)	112, 148, 212, 778, 825, 1042
LguI	GCTCTTC	1 cut(s)	1180
LmnI	GCTCC	3 cut(s)	1252, 1285, 1756
LweI	GCATC	7 cut(s)	244, 451, 537, 981, 1497, 1633, 1707
MabI	ACCWGGT	2 cut(s)	159, 1552
MaeI	CTAG	4 cut(s)	336, 1191, 1289, 1527
MaeII	ACGT	6 cut(s)	95, 105, 231, 1252, 1462, 1534
MaeIII	GTNAC	6 cut(s)	127, 227, 1194, 1352, 1777, 1830
MalI	GATC	6 cut(s)	114, 150, 214, 780, 827, 1044
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	6 cut(s)	112, 148, 212, 778, 825, 1042
MboII	GAAGA	8 cut(s)	414, 697, 835, 874, 1106, 1190, 1197, 1917
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	2 cut(s)	112, 778
MhlI	GDGCHC	5 cut(s)	76, 206, 268, 1111, 1282
MlsI	TGGCCA	2 cut(s)	471, 1676
MluCI	AATT	9 cut(s)	390, 497, 610, 626, 708, 943, 995, 1298, 1329
MluNI	TGGCCA	2 cut(s)	471, 1676
MlyI	GAGTC	4 cut(s)	128, 1596, 1772, 1838
MmeI	TCCRAC	1 cut(s)	1570
Mox20I	TGGCCA	2 cut(s)	471, 1676
MreI	CGCCGGCG	1 cut(s)	65
MroI	TCCGGA	1 cut(s)	781
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	2 cut(s)	471, 1676
MseI	TTAA	5 cut(s)	539, 555, 630, 768, 1379
MslI	CAYNNNNRTG	1 cut(s)	1634
Msp20I	TGGCCA	2 cut(s)	471, 1676
MspA1I	CMGCKG	3 cut(s)	142, 800, 1753
MspI	CCGG	5 cut(s)	66, 328, 357, 782, 1667
MspR9I	CCNGG	8 cut(s)	161, 329, 1275, 1284, 1374, 1386, 1452, 1554
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	7 cut(s)	161, 1275, 1284, 1374, 1386, 1452, 1554
MvnI	CGCG	2 cut(s)	35, 53
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	1866
NdeI	CATATG	2 cut(s)	1518, 1615
NdeII	GATC	6 cut(s)	112, 148, 212, 778, 825, 1042
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	9 cut(s)	413, 704, 913, 1029, 1567, 1624, 1763, 1789, 1870
NlaIV	GGNNCC	9 cut(s)	73, 332, 333, 355, 780, 786, 1236, 1248, 1627
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	2 cut(s)	1777, 1830
NsbI	TGCGCA	1 cut(s)	1167
NspI	RCATGY	2 cut(s)	1567, 1789
PaeI	GCATGC	1 cut(s)	1789
PaeR7I	CTCGAG	1 cut(s)	1104
PaqCI	CACCTGC	1 cut(s)	1640
PceI	AGGCCT	1 cut(s)	1384
PciSI	GCTCTTC	1 cut(s)	1180
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	10, 376, 659
PflMI	CCANNNNNTGG	2 cut(s)	1343, 1583
PleI	GAGTC	4 cut(s)	128, 1595, 1771, 1837
PmaCI	CACGTG	1 cut(s)	1253
PmlI	CACGTG	1 cut(s)	1253
PpsI	GAGTC	4 cut(s)	128, 1595, 1771, 1837
Ppu21I	YACGTR	1 cut(s)	1253
PpuMI	RGGWCCY	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	1111
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	7 cut(s)	159, 1273, 1282, 1372, 1384, 1450, 1552
PspCI	CACGTG	1 cut(s)	1253
PspEI	GGTNACC	1 cut(s)	1352
PspGI	CCWGG	7 cut(s)	159, 1273, 1282, 1372, 1384, 1450, 1552
PspN4I	GGNNCC	9 cut(s)	73, 332, 333, 355, 780, 786, 1236, 1248, 1627
PspPI	GGNCC	8 cut(s)	41, 245, 331, 1394, 1423, 1441, 1472, 1801
PspPPI	RGGWCCY	1 cut(s)	331
PsrI	GAACNNNNNNTAC	4 cut(s)	137, 169, 1006, 1038
PstI	CTGCAG	2 cut(s)	194, 1651
PstNI	CAGNNNCTG	1 cut(s)	1498
PsuI	RGATCY	2 cut(s)	112, 778
PvuII	CAGCTG	3 cut(s)	142, 800, 1753
RsaI	GTAC	8 cut(s)	104, 146, 796, 869, 1015, 1268, 1307, 1541
RsaNI	GTAC	8 cut(s)	103, 145, 795, 868, 1014, 1267, 1306, 1540
RseI	CAYNNNNRTG	1 cut(s)	1634
SacI	GAGCTC	1 cut(s)	1111
SalI	GTCGAC	2 cut(s)	91, 1458
SapI	GCTCTTC	1 cut(s)	1180
SaqAI	TTAA	5 cut(s)	539, 555, 630, 768, 1379
Sau3AI	GATC	6 cut(s)	112, 148, 212, 778, 825, 1042
Sau96I	GGNCC	8 cut(s)	41, 245, 331, 1394, 1423, 1441, 1472, 1801
SchI	GAGTC	4 cut(s)	128, 1596, 1772, 1838
ScrFI	CCNGG	8 cut(s)	161, 329, 1275, 1284, 1374, 1386, 1452, 1554
SduI	GDGCHC	5 cut(s)	76, 206, 268, 1111, 1282
SexAI	ACCWGGT	2 cut(s)	159, 1552
SfaNI	GCATC	7 cut(s)	244, 451, 537, 981, 1497, 1633, 1707
SfcI	CTRYAG	3 cut(s)	190, 238, 1647
Sfr274I	CTCGAG	1 cut(s)	1104
SgrAI	CRCCGGYG	1 cut(s)	65
SinI	GGWCC	6 cut(s)	245, 331, 1394, 1423, 1472, 1801
SlaI	CTCGAG	1 cut(s)	1104
SmiMI	CAYNNNNRTG	1 cut(s)	1634
SmlI	CTYRAG	4 cut(s)	199, 989, 1104, 1826
SmoI	CTYRAG	4 cut(s)	199, 989, 1104, 1826
SphI	GCATGC	1 cut(s)	1789
Sse9I	AATT	9 cut(s)	390, 497, 610, 626, 708, 943, 995, 1298, 1329
SseBI	AGGCCT	1 cut(s)	1384
SsiI	CCGC	9 cut(s)	33, 39, 53, 56, 69, 80, 243, 589, 1543
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	4 cut(s)	336, 1191, 1289, 1527
SstI	GAGCTC	1 cut(s)	1111
StuI	AGGCCT	1 cut(s)	1384
StyD4I	CCNGG	8 cut(s)	159, 327, 1273, 1282, 1372, 1384, 1450, 1552
StyI	CCWWGG	2 cut(s)	1526, 1866
TaaI	ACNGT	2 cut(s)	1018, 1923
TaiI	ACGT	6 cut(s)	98, 108, 234, 1255, 1465, 1537
TaqI	TCGA	4 cut(s)	92, 828, 1105, 1459
TaqII	GACCGA	2 cut(s)	155, 1823
TasI	AATT	9 cut(s)	390, 497, 610, 626, 708, 943, 995, 1298, 1329
TauI	GCSGC	3 cut(s)	42, 56, 59
TfiI	GAWTC	3 cut(s)	10, 376, 659
Tru1I	TTAA	5 cut(s)	539, 555, 630, 768, 1379
Tru9I	TTAA	5 cut(s)	539, 555, 630, 768, 1379
TseFI	GTSAC	2 cut(s)	1777, 1830
Tsp45I	GTSAC	2 cut(s)	1777, 1830
TspDTI	ATGAA	5 cut(s)	926, 996, 1014, 1136, 1917
TspGWI	ACGGA	1 cut(s)	621
Van91I	CCANNNNNTGG	2 cut(s)	1343, 1583
VpaK11BI	GGWCC	6 cut(s)	245, 331, 1394, 1423, 1472, 1801
XapI	RAATTY	1 cut(s)	626
XceI	RCATGY	2 cut(s)	1567, 1789
XhoI	CTCGAG	1 cut(s)	1104
XmaJI	CCTAGG	1 cut(s)	1526
XmiI	GTMKAC	3 cut(s)	92, 639, 1459
XspI	CTAG	4 cut(s)	336, 1191, 1289, 1527
ZraI	GACGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.