Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001493

Physical Location & Seq

Genomic Coordinates Reverse (-)

9255907 .. 9257879

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGTTCTTATTTGGCTGTTGCCGCAGCCTCAACAAATCCCCCGCATTTTATTCACCTGATTTACAAACCCCCTGGGGGACCTGCTAAGGTCAAATTAGGGTTGGTTGGTAAAGGTCTGACCTTTGACAGCGGTGGCTACAACATCAAGACAGGGCCTGGCTGTTCAATTGAACAAATGAAATTTGATATGGGAGGTTCAGCAGCCGTATTAGGTGCAGCAAAAGCCATTGCTCAAATCAAACCACCTGGTGTAGAGGTTCATTTCATTGTTGCAGCTTGCGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGACATTGTGACAGCATCAAATGGAAAGACAATCGAGGTCAATAACACTGATGCTGAAGGTAGACTTACTCTGGCCGATGCATTGGTATATGCTTGTAACCAAGGTGTTGATAAGATTGTTGACCTGGCAACCTTAACCGGTGCTTGCAGAGTTGCTCTTGGACCCTCAATAGCAGGTGTCTTCACACCGAGTGATGACCTGGCGAAGGAGGTTTTTGCAGCTTCAGAAATCAGTGGGGAGAAATTTTGGAGGTTGCCAATGGAGGAGAGTTATTGGGAGTCAATGAAATCCGGAATAGCTGATATGCTCAACACCGGTGCTCGTCAAGGTGGTTCAATAACTGCTGCTCTCTTCTTGAAGCAGTTCGTTGATGAAAAAGTTCAGTGGCTGCATATTGACATGGCCGGGCCTGTTTGGAGTGACAAGAAACGCACTGCTACAGGGTTCGGTGTTTCCACTCTGGTGGAGTGGGTTCAGAACAACTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

270

Amino Acids

28.26

Weight (kDa)

5.83

Isoelectric Point (pI)

24.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	1 - 261	2.9e-105	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24200 AT2G24200 AT2G24200 AT4G30910 AT4G30910 AT4G30920
fragaria_vesca	FvH4_1g00930
malus_domestica	MD00G1071000.v1.1 MD00G1071100.v1.1 MD02G1007600.v1.1 MD13G1251700.v1.1 MD15G1066200.v1.1
prunus_persica	Prupe.7G262900_v2.0.a1
pyrus_communis	pycom02g00650 pycom15g13640
rosa_chinensis	RchiOBHm_Chr2g0085631 RchiOBHm_Chr2g0085651 RchiOBHm_Chr3g0465161 RchiOBHm_Chr5g0033791 RchiOBHm_Chr7g0195001 RchiOBHm_Chr7g0217071
rosa_laevigata	RLG00000015707 RLG00000015708 RLG00000022963
rosa_multiflora	Rmu_sc0006261.1_g000002 Rmu_sc0008218.1_g000007 Rmu_sc0015049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155160 Rroxscaffold_2G00155170
rosa_rugosa	Rorug01G0461600 Rorug01G0461700 Rorug01G0461800 Rorug01G0461900.1 Rorug01G0462000 Rorug05G0426900
rosa_samantha	Rh1DG130200 Rh2AG011000 Rh2AG011200 Rh2BG011500 Rh2CG012300 Rh2DG013500 Rh3BG139600 Rh3CG141400 Rh3CG149800 Rh3DG140900 Rh5AG233200 Rh5AG401600 Rh6AG126400 Rh7DG148600
rosa_wichuraiana	Rw2G000980 Rw2G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	2 cut(s)	91, 482
AccI	GTMKAC	1 cut(s)	379
AccIII	TCCGGA	1 cut(s)	608
AciI	CCGC	3 cut(s)	24, 44, 132
AcoI	YGGCCR	2 cut(s)	390, 720
AcsI	RAATTY	2 cut(s)	182, 560
AcuI	CTGAAG	2 cut(s)	393, 525
AdeI	CACNNNGTG	2 cut(s)	251, 509
AfiI	CCNNNNNNNGG	2 cut(s)	77, 523
AgeI	ACCGGT	2 cut(s)	455, 632
AgsI	TTSAA	4 cut(s)	168, 173, 654, 676
AjnI	CCWGG	6 cut(s)	73, 157, 247, 313, 441, 516
AleI	CACNNNNGTG	1 cut(s)	779
AloI	GAACNNNNNNTCC	1 cut(s)	788
AluBI	AGCT	3 cut(s)	278, 539, 617
AluI	AGCT	3 cut(s)	278, 539, 617
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	1 cut(s)	312
AlwNI	CAGNNNCTG	2 cut(s)	158, 706
Aor13HI	TCCGGA	1 cut(s)	608
AoxI	GGCC	5 cut(s)	155, 311, 390, 720, 725
ApeKI	GCWGC	7 cut(s)	26, 203, 218, 275, 536, 662, 706
ApoI	RAATTY	2 cut(s)	182, 560
AsiGI	ACCGGT	2 cut(s)	455, 632
Asp700I	GAANNNNTTC	2 cut(s)	680, 696
AspS9I	GGNCC	4 cut(s)	80, 155, 479, 725
AsuC2I	CCSGG	1 cut(s)	724
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	80, 479
BbsI	GAAGAC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	7 cut(s)	38, 215, 230, 287, 548, 649, 693
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	6 cut(s)	75, 159, 249, 315, 443, 518
BcnI	CCSGG	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	756
BfuAI	ACCTGC	2 cut(s)	91, 482
BisI	GCNGC	8 cut(s)	24, 27, 204, 219, 276, 537, 663, 707
BlsI	GCNGC	8 cut(s)	25, 28, 205, 220, 277, 538, 664, 708
Bme1390I	CCNGG	7 cut(s)	75, 159, 249, 315, 443, 518, 724
Bme18I	GGWCC	2 cut(s)	80, 479
BmgT120I	GGNCC	4 cut(s)	80, 155, 479, 725
BmiI	GGNNCC	2 cut(s)	81, 481
BmrFI	CCNGG	7 cut(s)	75, 159, 249, 315, 443, 518, 724
BmsI	GCATC	3 cut(s)	341, 358, 385
BpiI	GAAGAC	1 cut(s)	490
BpmI	CTGGAG	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	724
BsaJI	CCNNGG	3 cut(s)	73, 74, 418
BsaWI	WCCGGW	3 cut(s)	455, 608, 632
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 523
Bse118I	RCCGGY	2 cut(s)	455, 632
Bse3DI	GCAATG	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	608
BseBI	CCWGG	6 cut(s)	75, 159, 249, 315, 443, 518
BseDI	CCNNGG	3 cut(s)	73, 74, 418
BseLI	CCNNNNNNNGG	2 cut(s)	77, 523
BseMI	GCAATG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	7 cut(s)	38, 215, 230, 287, 548, 649, 693
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	5 cut(s)	157, 313, 392, 722, 727
BshTI	ACCGGT	2 cut(s)	455, 632
BsiHKAI	GWGCWC	1 cut(s)	640
BsiSI	CCGG	4 cut(s)	456, 609, 633, 723
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	77, 523
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	5 cut(s)	157, 313, 392, 722, 727
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp13I	TCCGGA	1 cut(s)	608
BspACI	CCGC	3 cut(s)	24, 44, 132
BspANI	GGCC	5 cut(s)	157, 313, 392, 722, 727
BspEI	TCCGGA	1 cut(s)	608
BspLI	GGNNCC	2 cut(s)	81, 481
BspMI	ACCTGC	2 cut(s)	91, 482
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	2 cut(s)	455, 632
BssAI	RCCGGY	2 cut(s)	455, 632
BssECI	CCNNGG	3 cut(s)	73, 74, 418
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	6 cut(s)	75, 159, 249, 315, 443, 518
Bst6I	CTCTTC	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	280, 463
BstDEI	CTNAG	1 cut(s)	87
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstMAI	GTCTC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 224
BstNI	CCWGG	6 cut(s)	75, 159, 249, 315, 443, 518
BstSCI	CCNGG	7 cut(s)	73, 157, 247, 313, 441, 516, 722
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	7 cut(s)	38, 215, 230, 287, 548, 649, 693
BstV2I	GAAGAC	1 cut(s)	490
BstXI	CCANNNNNNTGG	1 cut(s)	781
BsuRI	GGCC	5 cut(s)	157, 313, 392, 722, 727
BtsI	GCAGTG	1 cut(s)	750
BtsIMutI	CAGTG	4 cut(s)	363, 556, 707, 750
BveI	ACCTGC	2 cut(s)	91, 482
Cac8I	GCNNGC	2 cut(s)	280, 463
CaiI	CAGNNNCTG	2 cut(s)	158, 706
Cfr10I	RCCGGY	2 cut(s)	455, 632
Cfr13I	GGNCC	4 cut(s)	80, 155, 479, 725
CsiI	ACCWGGT	1 cut(s)	247
CspAI	ACCGGT	2 cut(s)	455, 632
CviAII	CATG	1 cut(s)	718
DdeI	CTNAG	1 cut(s)	87
DraIII	CACNNNGTG	2 cut(s)	251, 509
EaeI	YGGCCR	2 cut(s)	390, 720
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	418
Eco147I	AGGCCT	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	80, 479
Eco57I	CTGAAG	2 cut(s)	393, 525
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO109I	RGGNCCY	2 cut(s)	80, 155
EcoRII	CCWGG	6 cut(s)	73, 157, 247, 313, 441, 516
EcoT14I	CCWWGG	1 cut(s)	418
EcoT22I	ATGCAT	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	1 cut(s)	721
FaiI	YATR	8 cut(s)	191, 290, 308, 406, 408, 623, 711, 719
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	717
FauI	CCCGC	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	8 cut(s)	24, 27, 204, 219, 276, 537, 663, 707
Fsp4HI	GCNGC	8 cut(s)	24, 27, 204, 219, 276, 537, 663, 707
GluI	GCNGC	8 cut(s)	24, 27, 204, 219, 276, 537, 663, 707
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	5 cut(s)	157, 313, 392, 722, 727
HapII	CCGG	4 cut(s)	456, 609, 633, 723
Hin1II	CATG	1 cut(s)	721
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	1 cut(s)	596
HpaII	CCGG	4 cut(s)	456, 609, 633, 723
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	380, 439
Hpy188I	TCNGA	3 cut(s)	120, 544, 795
Hpy188III	TCNNGA	3 cut(s)	148, 609, 673
Hpy8I	GTNNAC	2 cut(s)	380, 439
HpyAV	CCTTC	2 cut(s)	368, 517
HpyCH4V	TGCA	6 cut(s)	218, 275, 398, 465, 536, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 224
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	721
Kpn2I	TCCGGA	1 cut(s)	608
Lsp1109I	GCAGC	7 cut(s)	38, 215, 230, 287, 548, 649, 693
LweI	GCATC	3 cut(s)	341, 358, 385
MabI	ACCWGGT	1 cut(s)	247
MaeIII	GTNAC	3 cut(s)	325, 413, 737
MboII	GAAGA	3 cut(s)	490, 661, 795
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	4 cut(s)	95, 168, 182, 560
MlyI	GAGTC	1 cut(s)	605
MnlI	CCTC	9 cut(s)	40, 188, 250, 303, 346, 493, 520, 561, 574
Mph1103I	ATGCAT	1 cut(s)	400
MroI	TCCGGA	1 cut(s)	608
MroXI	GAANNNNTTC	2 cut(s)	680, 696
MseI	TTAA	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	779
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	4 cut(s)	456, 609, 633, 723
MspR9I	CCNGG	7 cut(s)	75, 159, 249, 315, 443, 518, 724
MunI	CAATTG	1 cut(s)	168
MvaI	CCWGG	6 cut(s)	75, 159, 249, 315, 443, 518
MwoI	GCNNNNNNNGC	2 cut(s)	23, 224
NciI	CCSGG	1 cut(s)	724
NlaIII	CATG	1 cut(s)	721
NlaIV	GGNNCC	2 cut(s)	81, 481
NmuCI	GTSAC	2 cut(s)	325, 737
NsiI	ATGCAT	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	779
PaqCI	CACCTGC	1 cut(s)	482
PasI	CCCWGGG	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	313
PdmI	GAANNNNTTC	2 cut(s)	680, 696
PinAI	ACCGGT	2 cut(s)	455, 632
PkrI	GCNGC	8 cut(s)	25, 28, 205, 220, 277, 538, 664, 708
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
PpuMI	RGGWCCY	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	80
Psp6I	CCWGG	6 cut(s)	73, 157, 247, 313, 441, 516
PspGI	CCWGG	6 cut(s)	73, 157, 247, 313, 441, 516
PspN4I	GGNNCC	2 cut(s)	81, 481
PspPI	GGNCC	4 cut(s)	80, 155, 479, 725
PspPPI	RGGWCCY	1 cut(s)	80
PstNI	CAGNNNCTG	2 cut(s)	158, 706
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	8 cut(s)	24, 27, 204, 219, 276, 537, 663, 707
Sau96I	GGNCC	4 cut(s)	80, 155, 479, 725
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	7 cut(s)	75, 159, 249, 315, 443, 518, 724
SduI	GDGCHC	1 cut(s)	640
SexAI	ACCWGGT	1 cut(s)	247
SfaNI	GCATC	3 cut(s)	341, 358, 385
SfcI	CTRYAG	1 cut(s)	756
SgrAI	CRCCGGYG	1 cut(s)	632
SinI	GGWCC	2 cut(s)	80, 479
SmiMI	CAYNNNNRTG	1 cut(s)	779
Sse9I	AATT	4 cut(s)	95, 168, 182, 560
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	3 cut(s)	24, 44, 132
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	7 cut(s)	73, 157, 247, 313, 441, 516, 722
StyI	CCWWGG	1 cut(s)	418
TaqI	TCGA	1 cut(s)	351
TasI	AATT	4 cut(s)	95, 168, 182, 560
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	4 cut(s)	370, 556, 707, 757
TseFI	GTSAC	2 cut(s)	325, 737
TseI	GCWGC	7 cut(s)	26, 203, 218, 275, 536, 662, 706
Tsp45I	GTSAC	2 cut(s)	325, 737
TspDTI	ATGAA	5 cut(s)	194, 251, 256, 617, 705
TspRI	CASTG	4 cut(s)	370, 556, 707, 757
VpaK11BI	GGWCC	2 cut(s)	80, 479
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	2 cut(s)	182, 560
XmiI	GTMKAC	1 cut(s)	379
XmnI	GAANNNNTTC	2 cut(s)	680, 696
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.