pycom15g20620

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002366
Physical Location & Seq
Reverse (-)
14769439 .. 14771031
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
ATGGCCGGCCCCGGAAAGTGCTTGCTGGTGACCGGACCTCCTGGTGTGGGCAAAAGCACTTTAGTAATGAGAGTGTTTGAAACCCTAAAAGCATCATATCCAAACTTAAAAATTCAGGGTTTCTACACTAGTGAGGTTAGAGAAGGAAGTGAGAGAGTGGGGTTCCAGGTGGTCACGTTGGACGGCCGTACAGCTCCCCTCTCCTCCTCCACCATTTCCAGCCCAGCGTCTTTGAGATGGCCTACTGTGGGGAAGTACAAAGTCGATGTTGCATCGTTTGAGTCACTGGCACTGCCTGAATTGCAGGTAAGAGAAGATACTGATCTATTCATCGTTGATGAAGTTGGGAGGATGGAGTTATTCAGTTCATCGTTCTTCCCTTGTGTTTTAAGGATTCTGGAGTCCAATGTCCCTTTTTTGGCCACGGTCCCAATTCCAAAATTCGGTCGTGATATACCTGCAGTTGCAAGGTTGAAGAATCATCCGGGGGCAACAATGTTTACGCTGAGCAAAAGTAACAGGGATGCTGTTAAAGAAGAGATATACTCCCAGTTAGTAGCTTTGTTGAGTAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

193

Amino Acids

20.98

Weight (kDa)

8.9

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 8 - 181 6.2e-46 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 295, 466
AcoI YGGCCR 3 cut(s) 3, 184, 420
AcsI RAATTY 2 cut(s) 111, 440
AfaI GTAC 2 cut(s) 190, 257
AfiI CCNNNNNNNGG 4 cut(s) 47, 248, 418, 443
AgsI TTSAA 2 cut(s) 80, 475
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 2 cut(s) 40, 165
AluBI AGCT 2 cut(s) 194, 560
AluI AGCT 2 cut(s) 194, 560
AoxI GGCC 5 cut(s) 3, 7, 184, 239, 420
ApoI RAATTY 2 cut(s) 111, 440
AspS9I GGNCC 3 cut(s) 8, 35, 427
AsuC2I CCSGG 2 cut(s) 12, 486
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 2 cut(s) 35, 427
BalI TGGCCA 1 cut(s) 422
BccI CCATC 2 cut(s) 231, 346
BceAI ACGGC 2 cut(s) 171, 199
BciT130I CCWGG 2 cut(s) 42, 167
BcnI CCSGG 2 cut(s) 12, 486
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 459
BfuAI ACCTGC 2 cut(s) 295, 466
BlpI GCTNAGC 1 cut(s) 506
Bme1390I CCNGG 4 cut(s) 12, 42, 167, 486
Bme18I GGWCC 2 cut(s) 35, 427
BmgT120I GGNCC 3 cut(s) 8, 35, 427
BmiI GGNNCC 3 cut(s) 10, 164, 429
BmrFI CCNGG 4 cut(s) 12, 42, 167, 486
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 3 cut(s) 101, 281, 514
BmuI ACTGGG 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BpmI CTGGAG 1 cut(s) 419
Bpu1102I GCTNAGC 1 cut(s) 506
BpuMI CCSGG 2 cut(s) 12, 486
BsaBI GATNNNNATC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 10, 423, 485
BsaWI WCCGGW 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 248, 418, 443
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 291, 550
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 2 cut(s) 42, 167
BseDI CCNNGG 3 cut(s) 10, 423, 485
BseGI GGATG 3 cut(s) 357, 481, 529
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 4 cut(s) 47, 248, 418, 443
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 2 cut(s) 291, 550
BseRI GAGGAG 2 cut(s) 193, 196
BseX3I CGGCCG 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 223
Bsh1285I CGRYCG 2 cut(s) 187, 448
BshFI GGCC 5 cut(s) 5, 9, 186, 241, 422
BsiEI CGRYCG 2 cut(s) 187, 448
BsiSI CCGG 4 cut(s) 6, 12, 33, 485
BslFI GGGAC 2 cut(s) 395, 413
BslI CCNNNNNNNGG 4 cut(s) 47, 248, 418, 443
BsmFI GGGAC 2 cut(s) 395, 413
BsnI GGCC 5 cut(s) 5, 9, 186, 241, 422
Bsp143I GATC 1 cut(s) 322
Bsp1720I GCTNAGC 1 cut(s) 506
BspANI GGCC 5 cut(s) 5, 9, 186, 241, 422
BspCNI CTCAG 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 10, 164, 429
BspMAI CTGCAG 1 cut(s) 463
BspMI ACCTGC 2 cut(s) 295, 466
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 2 cut(s) 291, 550
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 3 cut(s) 10, 423, 485
BssMI GATC 1 cut(s) 322
Bst2UI CCWGG 2 cut(s) 42, 167
Bst4CI ACNGT 2 cut(s) 247, 427
Bst6I CTCTTC 1 cut(s) 531
BstC8I GCNNGC 2 cut(s) 7, 23
BstDEI CTNAG 1 cut(s) 506
BstDSI CCRYGG 1 cut(s) 423
BstEII GGTNACC 1 cut(s) 28
BstF5I GGATG 3 cut(s) 357, 481, 529
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstMCI CGRYCG 2 cut(s) 187, 448
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNI CCWGG 2 cut(s) 42, 167
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 4 cut(s) 10, 40, 165, 484
BstSFI CTRYAG 1 cut(s) 459
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 5 cut(s) 5, 9, 186, 241, 422
BtgI CCRYGG 1 cut(s) 423
BtsCI GGATG 3 cut(s) 357, 481, 529
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 2 cut(s) 284, 290
BveI ACCTGC 2 cut(s) 295, 466
Cac8I GCNNGC 2 cut(s) 7, 23
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 3 cut(s) 8, 35, 427
CseI GACGC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 189, 256
CviJI RGCY 8 cut(s) 5, 9, 186, 194, 222, 241, 422, 560
CviKI_1 RGCY 8 cut(s) 5, 9, 186, 194, 222, 241, 422, 560
CviQI GTAC 2 cut(s) 189, 256
DdeI CTNAG 1 cut(s) 506
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
EaeI YGGCCR 3 cut(s) 3, 184, 420
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
EclXI CGGCCG 1 cut(s) 184
Eco47I GGWCC 2 cut(s) 35, 427
Eco52I CGGCCG 1 cut(s) 184
Eco91I GGTNACC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 40, 165
FaiI YATR 3 cut(s) 97, 455, 544
FaqI GGGAC 2 cut(s) 395, 413
FokI GGATG 3 cut(s) 364, 468, 536
FseI GGCCGGCC 1 cut(s) 9
FspBI CTAG 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 5 cut(s) 5, 9, 186, 241, 422
HapII CCGG 4 cut(s) 6, 12, 33, 485
HgaI GACGC 1 cut(s) 216
HinfI GANTC 4 cut(s) 281, 394, 401, 478
HpaII CCGG 4 cut(s) 6, 12, 33, 485
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 501, 572
Hpy188III TCNNGA 2 cut(s) 398, 449
Hpy8I GTNNAC 2 cut(s) 501, 572
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 247, 427
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 272, 304, 461, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 1 cut(s) 506
HpySE526I ACGT 1 cut(s) 176
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 199
LweI GCATC 3 cut(s) 101, 281, 514
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 4 cut(s) 28, 172, 282, 515
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 4 cut(s) 326, 367, 487, 548
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 4 cut(s) 111, 299, 432, 440
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 2 cut(s) 290, 410
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 48, 127, 209, 214, 217, 342
Mox20I TGGCCA 1 cut(s) 422
MroNI GCCGGC 1 cut(s) 5
MscI TGGCCA 1 cut(s) 422
MseI TTAA 3 cut(s) 107, 389, 531
Msp20I TGGCCA 1 cut(s) 422
MspI CCGG 4 cut(s) 6, 12, 33, 485
MspR9I CCNGG 4 cut(s) 12, 42, 167, 486
MvaI CCWGG 2 cut(s) 42, 167
MwoI GCNNNNNNNGC 1 cut(s) 301
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 2 cut(s) 12, 486
NdeII GATC 1 cut(s) 322
NgoMIV GCCGGC 1 cut(s) 5
NlaIV GGNNCC 3 cut(s) 10, 164, 429
NmuCI GTSAC 3 cut(s) 28, 172, 282
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 2 cut(s) 394, 478
PleI GAGTC 2 cut(s) 289, 409
PpsI GAGTC 2 cut(s) 289, 409
Psp6I CCWGG 2 cut(s) 40, 165
PspEI GGTNACC 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 40, 165
PspN4I GGNNCC 3 cut(s) 10, 164, 429
PspPI GGNCC 3 cut(s) 8, 35, 427
PstI CTGCAG 1 cut(s) 463
RigI GGCCGGCC 1 cut(s) 9
RsaI GTAC 2 cut(s) 190, 257
RsaNI GTAC 2 cut(s) 189, 256
SaqAI TTAA 3 cut(s) 107, 389, 531
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 3 cut(s) 8, 35, 427
SchI GAGTC 2 cut(s) 290, 410
ScrFI CCNGG 4 cut(s) 12, 42, 167, 486
SetI ASST 9 cut(s) 40, 138, 171, 179, 196, 309, 460, 473, 562
SfaNI GCATC 3 cut(s) 101, 281, 514
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 2 cut(s) 35, 427
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 4 cut(s) 111, 299, 432, 440
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 4 cut(s) 10, 40, 165, 484
TaaI ACNGT 2 cut(s) 247, 427
TaiI ACGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 264
TaqII GACCGA 1 cut(s) 434
TasI AATT 4 cut(s) 111, 299, 432, 440
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 2 cut(s) 394, 478
Tru1I TTAA 3 cut(s) 107, 389, 531
Tru9I TTAA 3 cut(s) 107, 389, 531
TscAI CASTG 2 cut(s) 291, 297
TseFI GTSAC 3 cut(s) 28, 172, 282
Tsp45I GTSAC 3 cut(s) 28, 172, 282
TspDTI ATGAA 3 cut(s) 319, 354, 357
TspRI CASTG 2 cut(s) 291, 297
VpaK11BI GGWCC 2 cut(s) 35, 427
XapI RAATTY 2 cut(s) 111, 440
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.