Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Forward (+)

20778889 .. 20783925

Gene Structure 5037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTAGCTCTCTGCAGCGCATGTCAAACCACGCTCGTCTTCTCCGAGCCTCTGTTGCCTCAGGGTCCAGGCCGTTCTCGGCGGACGCTCTGGTCGAGTACATGCCCGGTGAGATCGGAAAGGTCGCTGGCATTCCCGATGAACATCTCCGCCGGAGGGTTATAATATACTCACCTGCAAGAACTGCGTCTCAGCAAGGATCAGGGAAACTTGGGAAGTGGAAGATCAACTTTGTGTCAACACAGAAGTGGGAGAATCCATTGATGGGCTGGACTTCCACTGGGGACCCATACGCACATGTCGGTGATTCGACACTGGGTTTTGACAGTGAAGACGCTGCAAGGTCCTTTGCAGAGAGACATGGTTGGGATTATGTGGTTAAAAGGCGGCAAACACCATTATTGAGGGTGAAGGCATATGCAGACAACTTCAAGTTTAAAGGCCTACCGAAAACTGAGGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

156

Amino Acids

17.29

Weight (kDa)

9.81

Isoelectric Point (pI)

57.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUS4	PF04800	54 - 147	2e-29	NADH dehydrogenase ubiquinone Fe-S protein 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AarI	CACCTGC	1 cut(s)	184
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	184
AciI	CCGC	3 cut(s)	83, 151, 388
AclWI	GGATC	1 cut(s)	208
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	157, 266
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	68
AleI	CACNNNNGTG	1 cut(s)	247
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	195, 352
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	71, 442
ApeKI	GCWGC	2 cut(s)	16, 338
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	3 cut(s)	66, 286, 345
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	4 cut(s)	122, 165, 317, 421
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	3 cut(s)	66, 286, 345
AxyI	CCTNAGG	1 cut(s)	61
BbsI	GAAGAC	2 cut(s)	32, 339
BbvI	GCAGC	2 cut(s)	28, 325
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	195, 352
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	17, 339, 389
BlsI	GCNGC	3 cut(s)	18, 340, 390
Bme1390I	CCNGG	2 cut(s)	70, 108
Bme18I	GGWCC	3 cut(s)	66, 286, 345
BmgT120I	GGNCC	3 cut(s)	66, 286, 345
BmiI	GGNNCC	3 cut(s)	67, 287, 288
BmrFI	CCNGG	2 cut(s)	70, 108
BmrI	ACTGGG	2 cut(s)	291, 326
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	2 cut(s)	291, 326
BpiI	GAAGAC	2 cut(s)	32, 339
BpuMI	CCSGG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 266
Bse1I	ACTGG	2 cut(s)	286, 321
Bse21I	CCTNAGG	1 cut(s)	61
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	70
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	157, 266
BseMII	CTCAG	3 cut(s)	75, 206, 447
BseNI	ACTGG	2 cut(s)	286, 321
BseXI	GCAGC	2 cut(s)	28, 325
BshFI	GGCC	2 cut(s)	73, 444
BsiSI	CCGG	2 cut(s)	108, 154
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	157, 266
BsmAI	GTCTC	2 cut(s)	195, 352
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	73, 444
Bsp143I	GATC	3 cut(s)	114, 200, 225
BspACI	CCGC	3 cut(s)	83, 151, 388
BspANI	GGCC	2 cut(s)	73, 444
BspCNI	CTCAG	3 cut(s)	74, 205, 448
BspLI	GGNNCC	3 cut(s)	67, 287, 288
BspMAI	CTGCAG	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	286, 321
BssMI	GATC	3 cut(s)	114, 200, 225
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	7, 130
BstDEI	CTNAG	3 cut(s)	61, 192, 456
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	3 cut(s)	117, 203, 228
BstMAI	GTCTC	2 cut(s)	195, 352
BstMBI	GATC	3 cut(s)	114, 200, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 185
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	3 cut(s)	25, 106, 302
BstSCI	CCNGG	2 cut(s)	68, 106
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	28, 325
BstV2I	GAAGAC	2 cut(s)	32, 339
Bsu36I	CCTNAGG	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	73, 444
BtsIMutI	CAGTG	3 cut(s)	279, 314, 334
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	7, 130
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	3 cut(s)	66, 286, 345
CseI	GACGC	3 cut(s)	95, 177, 344
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	4 cut(s)	22, 103, 299, 362
CviJI	RGCY	6 cut(s)	5, 9, 50, 73, 270, 444
CviKI_1	RGCY	6 cut(s)	5, 9, 50, 73, 270, 444
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	3 cut(s)	61, 192, 456
DpnI	GATC	3 cut(s)	116, 202, 227
DpnII	GATC	3 cut(s)	114, 200, 225
DraI	TTTAAA	1 cut(s)	439
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EciI	GGCGGA	2 cut(s)	98, 140
Eco147I	AGGCCT	1 cut(s)	444
Eco47I	GGWCC	3 cut(s)	66, 286, 345
Eco81I	CCTNAGG	1 cut(s)	61
EcoO109I	RGGNCCY	2 cut(s)	286, 345
EcoRII	CCWGG	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	4 cut(s)	25, 106, 302, 365
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	4 cut(s)	21, 102, 298, 361
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	17, 339, 389
Fsp4HI	GCNGC	3 cut(s)	17, 339, 389
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	3 cut(s)	17, 339, 389
HaeIII	GGCC	2 cut(s)	73, 444
HapII	CCGG	2 cut(s)	108, 154
HgaI	GACGC	3 cut(s)	95, 177, 344
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	25, 106, 302, 365
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	256, 308
HpaII	CCGG	2 cut(s)	108, 154
HphI	GGTGA	4 cut(s)	122, 165, 317, 421
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	47, 119
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	5 cut(s)	16, 179, 341, 353, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 185
HpyF3I	CTNAG	3 cut(s)	61, 192, 456
Hsp92II	CATG	4 cut(s)	25, 106, 302, 365
HspAI	GCGC	1 cut(s)	19
KflI	GGGWCCC	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	114, 200, 225
Lsp1109I	GCAGC	2 cut(s)	28, 325
MaeI	CTAG	1 cut(s)	6
MalI	GATC	3 cut(s)	116, 202, 227
MboI	GATC	3 cut(s)	114, 200, 225
MboII	GAAGA	3 cut(s)	32, 235, 344
MnlI	CCTC	5 cut(s)	61, 70, 150, 399, 451
MseI	TTAA	2 cut(s)	381, 438
MslI	CAYNNNNRTG	2 cut(s)	247, 303
MspI	CCGG	2 cut(s)	108, 154
MspR9I	CCNGG	2 cut(s)	70, 108
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	56, 185
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	3 cut(s)	114, 200, 225
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	25, 106, 302, 365
NlaIV	GGNNCC	3 cut(s)	67, 287, 288
NmeAIII	GCCGAG	1 cut(s)	59
NspI	RCATGY	3 cut(s)	25, 106, 302
OliI	CACNNNNGTG	1 cut(s)	247
PaqCI	CACCTGC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	444
PciI	ACATGT	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	2 cut(s)	43, 93
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	256, 308
PkrI	GCNGC	3 cut(s)	18, 340, 390
PpuMI	RGGWCCY	2 cut(s)	286, 345
PscI	ACATGT	1 cut(s)	298
PsiI	TTATAA	1 cut(s)	164
Psp5II	RGGWCCY	2 cut(s)	286, 345
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	67, 287, 288
PspPI	GGNCC	3 cut(s)	66, 286, 345
PspPPI	RGGWCCY	2 cut(s)	286, 345
PstI	CTGCAG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	2 cut(s)	247, 303
SaqAI	TTAA	2 cut(s)	381, 438
SatI	GCNGC	3 cut(s)	17, 339, 389
Sau3AI	GATC	3 cut(s)	114, 200, 225
Sau96I	GGNCC	3 cut(s)	66, 286, 345
ScrFI	CCNGG	2 cut(s)	70, 108
SetI	ASST	4 cut(s)	11, 126, 178, 347
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	3 cut(s)	66, 286, 345
SmiMI	CAYNNNNRTG	2 cut(s)	247, 303
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	3 cut(s)	83, 151, 388
SspMI	CTAG	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	68, 106
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	2 cut(s)	96, 311
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	256, 308
Tru1I	TTAA	2 cut(s)	381, 438
Tru9I	TTAA	2 cut(s)	381, 438
TscAI	CASTG	3 cut(s)	286, 321, 334
TseI	GCWGC	2 cut(s)	16, 338
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	3 cut(s)	286, 321, 334
VpaK11BI	GGWCC	3 cut(s)	66, 286, 345
XceI	RCATGY	3 cut(s)	25, 106, 302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	267
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.