Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008928

Physical Location & Seq

Genomic Coordinates Reverse (-)

23133520 .. 23133783

Gene Structure 264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGAGGGAGAAGATTCAGATCAAGAAGATCGACAACGCGACCGCGAGGCAGGTGACATTTTCCAAGAGGAGAAGAGGACTTTTCAAGAAGGCTGAGGAGCTCTCCGTTCTCTGTGATGCCGATATTGCTCTTATCATCTTTTCTTCCACCGGAAAGCTCTTTGAATACGCCAGCTCTAGGTCTCCCTCTCTCAGTCTCTCTCACTTGCATACACAATTTTTTTTTCTTTTTTCTGTAATATTATTTTTAATGGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

88

Amino Acids

9.96

Weight (kDa)

10.21

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	7.4e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008928)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11353 FvH4_4g19210 FvH4_5g29232
malus_domestica	MD05G1049100.v1.1 MD05G1049400.v1.1 MD06G1163200.v1.1 MD09G1074000.v1.1 MD09G1075200.v1.1 MD10G1055900.v1.1 MD10G1306300.v1.1
prunus_persica	Prupe.1G531300_v2.0.a1 Prupe.1G531500_v2.0.a1 Prupe.1G538700_v2.0.a1
pyrus_communis	pycom08g16930 pycom09g00120 pycom15g27670
rosa_chinensis	RchiOBHm_Chr6g0270001 RchiOBHm_Chr7g0233561
rosa_multiflora	Rmu_sc0002409.1_g000001 Rmu_sc0008851.1_g000013
rosa_roxburghii	Rroxscaffold_3G00227180 Rroxscaffold_5G00351090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	2 cut(s)	41, 47
AciI	CCGC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	88, 167
AluBI	AGCT	3 cut(s)	103, 160, 177
AluI	AGCT	3 cut(s)	103, 160, 177
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	189, 203
AsuHPI	GGTGA	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	189, 203
BfaI	CTAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	43
BmsI	GCATC	1 cut(s)	109
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
Bpu10I	CCTNAGC	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	87, 208
BseRI	GAGGAG	2 cut(s)	85, 113
Bsh1236I	CGCG	2 cut(s)	41, 47
Bsh1285I	CGRYCG	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	189, 203
Bso31I	GGTCTC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	21, 30
BspACI	CCGC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	88, 207
BspFNI	CGCG	2 cut(s)	41, 47
BspMI	ACCTGC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	189
BssMI	GATC	2 cut(s)	21, 30
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	96, 194
BstFNI	CGCG	2 cut(s)	41, 47
BstKTI	GATC	2 cut(s)	24, 33
BstMAI	GTCTC	2 cut(s)	189, 203
BstMBI	GATC	2 cut(s)	21, 30
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstUI	CGCG	2 cut(s)	41, 47
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	175
CviJI	RGCY	4 cut(s)	95, 103, 160, 177
CviKI_1	RGCY	4 cut(s)	95, 103, 160, 177
DdeI	CTNAG	2 cut(s)	96, 194
DpnI	GATC	2 cut(s)	23, 32
DpnII	GATC	2 cut(s)	21, 30
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
FaiI	YATR	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	180
HapII	CCGG	1 cut(s)	153
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	25, 88
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	96, 194
Kzo9I	GATC	2 cut(s)	21, 30
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	38, 166, 187
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	23, 32
MboI	GATC	2 cut(s)	21, 30
MboII	GAAGA	4 cut(s)	25, 40, 87, 138
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	218
MnlI	CCTC	5 cut(s)	42, 63, 71, 91, 199
MseI	TTAA	1 cut(s)	251
MspI	CCGG	1 cut(s)	153
MvnI	CGCG	2 cut(s)	41, 47
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	21, 30
NmuCI	GTSAC	1 cut(s)	55
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	105
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	251
Sau3AI	GATC	2 cut(s)	21, 30
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	5 cut(s)	57, 105, 162, 179, 185
SfaNI	GCATC	1 cut(s)	109
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	45
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	105
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	97
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.