Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Reverse (-)

33365236 .. 33367358

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGACATTAGAAGCTGTGGTTTACCCACAAGAGTACCCATTTAGCTTTGGTTGCAAGGACTTCTACTCTTTTAATGGAGGTGGTTCTTGGGGCAGTGACTTCATCTCACAAGACCAACAAGGCAACAATGAATATTGGGACTACTGTTCATCATCTCCTTCACTTTTGCAAAATGTGAAAGATTGGGATCCTAACTCCTCACCTGAGGCCTGCACGGTTAATCAATCTTGCCAATCAGGACAACACCTCTCCGCCATGGAAGCACCGCCGCAACTAGCAACAACAAGTCGGCGCAAACGGCGTCGTACCAAGAGCAGCAAGAACAAGGAGGAAATTGAAAACCAGAGGATGACGCACATTGTTGTGGAGCGCAACAGGCGCAAACAAATGAATGAGTACCTTGCTGGGGACCAAGCATCAATTGTTGGGGGTGCCATAAACTTTGTGAAGGAGCTAGAGCAGCTTTGTCAGTCCATGAACAGCAACAAGAGGAGCAAGCAACAGCCTTTGGCTGACTTCTTCACCTTCCCACAATTTTCAACTCGTGCAACACAGAATAACAACTCAGCTGGGGTCCAAGCAAATGAGTCGAATACGACTCAGTGTAACAACAACCAGTGGGCAGCAGCAGATATAGAAGTGACCATGGTGGACAACCATGCCAACCTTAAGATACTGTCCAAGAAAAGGCCTAGACAGCTGTTGAAGATGGTGGCTGGGTTTCAAAGCCTTAGGCTCAGTGTTCTTCACCTTAATGTCACCACAGCTGATGAAATGGTCCTCTACTCGGTTAGCGTTAAGATTGAAGAAGGCTGCCCGTTAAATACAGTGGATGAAATAGCAGCAGCTGTTAATCAAATGCTCCGCACAATACAAGAAGCTGCCTTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

298

Amino Acids

33.34

Weight (kDa)

6.45

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	211 - 287	8.2e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AciI	CCGC	4 cut(s)	252, 266, 269, 865
AclWI	GGATC	2 cut(s)	182, 195
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	3 cut(s)	35, 307, 398
AfiI	CCNNNNNNNGG	3 cut(s)	406, 687, 787
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	5 cut(s)	338, 540, 706, 725, 806
AlwI	GGATC	2 cut(s)	182, 195
AlwNI	CAGNNNCTG	1 cut(s)	848
AoxI	GGCC	2 cut(s)	207, 689
ApeKI	GCWGC	8 cut(s)	315, 460, 623, 626, 813, 842, 845, 881
AspLEI	GCGC	3 cut(s)	294, 372, 381
AspS9I	GGNCC	3 cut(s)	409, 574, 778
AsuHPI	GGTGA	4 cut(s)	192, 514, 740, 751
AvaII	GGWCC	3 cut(s)	409, 574, 778
AxyI	CCTNAGG	2 cut(s)	204, 731
BaeI	ACNNNNGTAYC	2 cut(s)	17, 50
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	431
BauI	CACGAG	1 cut(s)	543
BbvI	GCAGC	8 cut(s)	327, 472, 635, 638, 800, 854, 857, 868
BccI	CCATC	1 cut(s)	703
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	570, 604
BfaI	CTAG	3 cut(s)	275, 455, 693
BfrI	CTTAAG	1 cut(s)	668
BisI	GCNGC	9 cut(s)	269, 316, 461, 624, 627, 814, 843, 846, 882
BlsI	GCNGC	9 cut(s)	270, 317, 462, 625, 628, 815, 844, 847, 883
Bme18I	GGWCC	3 cut(s)	409, 574, 778
BmgT120I	GGNCC	3 cut(s)	409, 574, 778
BmiI	GGNNCC	4 cut(s)	189, 410, 433, 575
BmsI	GCATC	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	255, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	406, 687, 787
Bse1I	ACTGG	1 cut(s)	616
Bse21I	CCTNAGG	2 cut(s)	204, 731
Bse8I	GATNNNNATC	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	255, 645
BseGI	GGATG	2 cut(s)	354, 838
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	3 cut(s)	406, 687, 787
BseMII	CTCAG	4 cut(s)	195, 579, 614, 751
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	2 cut(s)	187, 505
BseXI	GCAGC	8 cut(s)	327, 472, 635, 638, 800, 854, 857, 868
BseYI	CCCAGC	3 cut(s)	404, 569, 716
BsgI	GTGCAG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	209, 691
BshNI	GGYRCC	1 cut(s)	431
BslFI	GGGAC	2 cut(s)	152, 422
BslI	CCNNNNNNNGG	3 cut(s)	406, 687, 787
BsmFI	GGGAC	2 cut(s)	152, 422
BsnI	GGCC	2 cut(s)	209, 691
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	2 cut(s)	255, 645
BspACI	CCGC	4 cut(s)	252, 266, 269, 865
BspANI	GGCC	2 cut(s)	209, 691
BspCNI	CTCAG	4 cut(s)	196, 578, 613, 750
BspLI	GGNNCC	4 cut(s)	189, 410, 433, 575
BspPI	GGATC	2 cut(s)	182, 195
BspT107I	GGYRCC	1 cut(s)	431
BspTI	CTTAAG	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	616
BssECI	CCNNGG	2 cut(s)	255, 645
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	301
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	2 cut(s)	255, 645
Bst2BI	CACGAG	1 cut(s)	543
Bst4CI	ACNGT	4 cut(s)	146, 217, 678, 829
BstACI	GRCGYC	1 cut(s)	301
BstAFI	CTTAAG	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	211, 497
BstDEI	CTNAG	5 cut(s)	204, 565, 600, 731, 737
BstDSI	CCRYGG	2 cut(s)	255, 645
BstF5I	GGATG	2 cut(s)	354, 838
BstHHI	GCGC	3 cut(s)	294, 372, 381
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 260, 298, 376, 378, 460, 697
BstV1I	GCAGC	8 cut(s)	327, 472, 635, 638, 800, 854, 857, 868
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu36I	CCTNAGG	2 cut(s)	204, 731
BsuRI	GGCC	2 cut(s)	209, 691
BtgI	CCRYGG	2 cut(s)	255, 645
BtsCI	GGATG	2 cut(s)	354, 838
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	5 cut(s)	100, 608, 623, 745, 834
Cac8I	GCNNGC	2 cut(s)	211, 497
CaiI	CAGNNNCTG	1 cut(s)	848
CfoI	GCGC	3 cut(s)	294, 372, 381
Cfr13I	GGNCC	3 cut(s)	409, 574, 778
CseI	GACGC	2 cut(s)	290, 361
Csp6I	GTAC	3 cut(s)	34, 306, 397
CviAII	CATG	4 cut(s)	256, 475, 646, 659
CviQI	GTAC	3 cut(s)	34, 306, 397
DdeI	CTNAG	5 cut(s)	204, 565, 600, 731, 737
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	255, 645
Eco147I	AGGCCT	2 cut(s)	209, 691
Eco47I	GGWCC	3 cut(s)	409, 574, 778
Eco81I	CCTNAGG	2 cut(s)	204, 731
EcoT14I	CCWWGG	2 cut(s)	255, 645
ErhI	CCWWGG	2 cut(s)	255, 645
FaeI	CATG	4 cut(s)	259, 478, 649, 662
FaiI	YATR	6 cut(s)	257, 437, 476, 635, 647, 660
FaqI	GGGAC	2 cut(s)	152, 422
FatI	CATG	4 cut(s)	255, 474, 645, 658
Fnu4HI	GCNGC	9 cut(s)	269, 316, 461, 624, 627, 814, 843, 846, 882
FokI	GGATG	2 cut(s)	361, 845
Fsp4HI	GCNGC	9 cut(s)	269, 316, 461, 624, 627, 814, 843, 846, 882
FspBI	CTAG	3 cut(s)	275, 455, 693
GlaI	GCGC	3 cut(s)	293, 371, 380
GluI	GCNGC	9 cut(s)	269, 316, 461, 624, 627, 814, 843, 846, 882
GsaI	CCCAGC	3 cut(s)	408, 573, 720
HaeIII	GGCC	2 cut(s)	209, 691
HgaI	GACGC	2 cut(s)	290, 361
HhaI	GCGC	3 cut(s)	294, 372, 381
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	4 cut(s)	259, 478, 649, 662
Hin6I	GCGC	3 cut(s)	292, 370, 379
HinP1I	GCGC	3 cut(s)	292, 370, 379
HinfI	GANTC	2 cut(s)	587, 598
HphI	GGTGA	4 cut(s)	192, 514, 740, 751
Hpy166II	GTNNAC	2 cut(s)	22, 652
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	2 cut(s)	22, 652
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	4 cut(s)	168, 442, 535, 803
HpyCH4III	ACNGT	4 cut(s)	146, 217, 678, 829
HpyCH4V	TGCA	4 cut(s)	54, 169, 213, 548
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 260, 298, 376, 378, 460, 697
HpyF3I	CTNAG	5 cut(s)	204, 565, 600, 731, 737
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	4 cut(s)	259, 478, 649, 662
HspAI	GCGC	3 cut(s)	292, 370, 379
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	4 cut(s)	367, 451, 492, 867
LpnPI	CCDG	9 cut(s)	216, 222, 223, 356, 361, 390, 555, 629, 702
Lsp1109I	GCAGC	8 cut(s)	327, 472, 635, 638, 800, 854, 857, 868
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	3 cut(s)	275, 455, 693
MaeIII	GTNAC	4 cut(s)	95, 605, 640, 757
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	4 cut(s)	511, 718, 737, 818
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	3 cut(s)	333, 420, 533
MlyI	GAGTC	2 cut(s)	592, 596
MnlI	CCTC	8 cut(s)	71, 199, 208, 257, 322, 339, 483, 791
MseI	TTAA	7 cut(s)	72, 219, 669, 753, 798, 821, 852
MslI	CAYNNNNRTG	2 cut(s)	362, 753
MspA1I	CMGCKG	4 cut(s)	569, 700, 767, 848
MspCI	CTTAAG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	420
MwoI	GCNNNNNNNGC	7 cut(s)	51, 260, 298, 376, 378, 460, 697
NcoI	CCATGG	2 cut(s)	255, 645
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	259, 478, 649, 662
NlaIV	GGNNCC	4 cut(s)	189, 410, 433, 575
NmuCI	GTSAC	3 cut(s)	95, 640, 757
PceI	AGGCCT	2 cut(s)	209, 691
PkrI	GCNGC	9 cut(s)	270, 317, 462, 625, 628, 815, 844, 847, 883
PleI	GAGTC	2 cut(s)	592, 595
PpsI	GAGTC	2 cut(s)	592, 595
PspFI	CCCAGC	3 cut(s)	404, 569, 716
PspN4I	GGNNCC	4 cut(s)	189, 410, 433, 575
PspPI	GGNCC	3 cut(s)	409, 574, 778
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	4 cut(s)	569, 700, 767, 848
RsaI	GTAC	3 cut(s)	35, 307, 398
RsaNI	GTAC	3 cut(s)	34, 306, 397
RseI	CAYNNNNRTG	2 cut(s)	362, 753
SaqAI	TTAA	7 cut(s)	72, 219, 669, 753, 798, 821, 852
SatI	GCNGC	9 cut(s)	269, 316, 461, 624, 627, 814, 843, 846, 882
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	3 cut(s)	409, 574, 778
SchI	GAGTC	2 cut(s)	592, 596
SfaNI	GCATC	1 cut(s)	425
SinI	GGWCC	3 cut(s)	409, 574, 778
SmiMI	CAYNNNNRTG	2 cut(s)	362, 753
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	3 cut(s)	333, 420, 533
SseBI	AGGCCT	2 cut(s)	209, 691
SsiI	CCGC	4 cut(s)	252, 266, 269, 865
SspI	AATATT	1 cut(s)	134
SspMI	CTAG	3 cut(s)	275, 455, 693
StuI	AGGCCT	2 cut(s)	209, 691
StyI	CCWWGG	2 cut(s)	255, 645
TaaI	ACNGT	4 cut(s)	146, 217, 678, 829
TaqI	TCGA	1 cut(s)	590
TasI	AATT	3 cut(s)	333, 420, 533
TauI	GCSGC	1 cut(s)	271
Tru1I	TTAA	7 cut(s)	72, 219, 669, 753, 798, 821, 852
Tru9I	TTAA	7 cut(s)	72, 219, 669, 753, 798, 821, 852
TscAI	CASTG	5 cut(s)	100, 608, 623, 745, 834
TseFI	GTSAC	3 cut(s)	95, 640, 757
TseI	GCWGC	8 cut(s)	315, 460, 623, 626, 813, 842, 845, 881
Tsp45I	GTSAC	3 cut(s)	95, 640, 757
TspDTI	ATGAA	7 cut(s)	91, 138, 144, 404, 491, 786, 849
TspRI	CASTG	5 cut(s)	100, 608, 623, 745, 834
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	3 cut(s)	409, 574, 778
XspI	CTAG	3 cut(s)	275, 455, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.