Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005370

Physical Location & Seq

Genomic Coordinates Reverse (-)

37335450 .. 37337147

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGAGATTTGCCAATTTCCGAAACATTTTTACGAGGATACAATGGCAGAGCAGAGAGCAGCATGGCCTTATCTTGTTCTTGGTCACCTATGCTTCTCACAACCACCCAATCCTCCTCCTCCTCCGCCGCGTCGCCGTCGACTCCTAAACTAGTGCCCTGTCATTTTCCGGGGAAACCCACCACCACCACCATTCACACACTCTCCAGCTGCAGTTCAAGTTCTCAGAAATGGAGAGCCAAAGTTTCATTCTTTCCTGCATTTTTGAACAAACGCAAAGATACTCGGCCTCTCAAGGACGAGCTTCTTGACGCCATTGCTCCGCTCGATCGAGGCGCCGATGCCACTCCGGAGGACCAGCAAACTGTTGATCAGATTGCACGCAAACTTGAAGCAGTAAACCCAACAAAGGAACCACTCAAATCTGATTTACTCAATGGAAAATGGGAGCTTATATACACTACTTCAATGTCTATTCTGCAAACTCAGAGACCCAAAATTTTGATCGATCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

173

Amino Acids

18.96

Weight (kDa)

9.05

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	98 - 163	5.5e-20	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26070 AT3G26080 AT3G26080
fragaria_vesca	FvH4_5g29660 FvH4_5g29660
malus_domestica	MD15G1421400.v1.1 MD15G1421500.v1.1
prunus_persica	Prupe.1G566700_v2.0.a1 Prupe.1G566700_v2.0.a1
pyrus_communis	pycom15g37360 pycom15g37370
rosa_chinensis	RchiOBHm_Chr7g0222921 RchiOBHm_Chr7g0222941
rosa_laevigata	RLG00000002012 RLG00000002013
rosa_multiflora	Rmu_sc0000774.1_g000024 Rmu_sc0000774.1_g000025 Rmu_sc0000774.1_g000026
rosa_roxburghii	Rroxscaffold_3G00236410 Rroxscaffold_3G00236430
rosa_rugosa	Rorug07G0212300
rosa_samantha	Rh7AG357300 Rh7BG345200 Rh7BG345300 Rh7CG375400 Rh7DG352000 Rh7DG352100
rosa_wichuraiana	Rw7G030380 Rw7G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	3 cut(s)	126, 129, 323
AcsI	RAATTY	1 cut(s)	498
AcyI	GRCGYC	2 cut(s)	312, 336
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	219, 268, 392, 468
AhlI	ACTAGT	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	210, 304, 451
AluI	AGCT	3 cut(s)	210, 304, 451
Alw26I	GTCTC	1 cut(s)	484
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	2 cut(s)	66, 287
ApeKI	GCWGC	2 cut(s)	60, 210
ApoI	RAATTY	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	72, 197
BceAI	ACGGC	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	484
BcuI	ACTAGT	1 cut(s)	151
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	61, 129, 211
BlsI	GCNGC	3 cut(s)	62, 130, 212
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	337, 414
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	507
BsaHI	GRCGYC	2 cut(s)	312, 336
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	349
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	239, 500
BseRI	GAGGAG	3 cut(s)	106, 109, 112
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	72, 197
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	68, 289
BshNI	GGYRCC	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	507
BsiEI	CGRYCG	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	170, 350
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	68, 289
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	328, 370, 504, 508
BspACI	CCGC	3 cut(s)	126, 129, 323
BspANI	GGCC	2 cut(s)	68, 289
BspCNI	CTCAG	2 cut(s)	238, 499
BspDI	ATCGAT	1 cut(s)	507
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	337, 414
BspMAI	CTGCAG	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	4 cut(s)	328, 370, 504, 508
BssNI	GRCGYC	2 cut(s)	312, 336
Bst4CI	ACNGT	1 cut(s)	367
BstACI	GRCGYC	2 cut(s)	312, 336
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	225, 486
BstEII	GGTNACC	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	4 cut(s)	331, 373, 507, 511
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	4 cut(s)	328, 370, 504, 508
BstMCI	CGRYCG	1 cut(s)	331
BstPI	GGTNACC	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	72, 197
Bsu15I	ATCGAT	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	68, 289
BsuTUI	ATCGAT	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	507
CseI	GACGC	2 cut(s)	120, 320
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	6 cut(s)	68, 210, 239, 289, 304, 451
CviKI_1	RGCY	6 cut(s)	68, 210, 239, 289, 304, 451
DdeI	CTNAG	2 cut(s)	225, 486
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	4 cut(s)	330, 372, 506, 510
DpnII	GATC	4 cut(s)	328, 370, 504, 508
EciI	GGCGGA	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	355
Eco91I	GGTNACC	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	84
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
FaeI	CATG	1 cut(s)	67
FaiI	YATR	4 cut(s)	65, 92, 455, 457
FatI	CATG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	3 cut(s)	61, 129, 211
Fsp4HI	GCNGC	3 cut(s)	61, 129, 211
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	61, 129, 211
GsuI	CTGGAG	1 cut(s)	190
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	68, 289
HapII	CCGG	2 cut(s)	170, 350
HgaI	GACGC	2 cut(s)	120, 320
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	2 cut(s)	312, 336
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	2 cut(s)	170, 350
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	141, 400
Hpy188I	TCNGA	5 cut(s)	22, 228, 375, 427, 489
Hpy188III	TCNNGA	2 cut(s)	308, 350
Hpy8I	GTNNAC	2 cut(s)	141, 400
Hpy99I	CGWCG	2 cut(s)	136, 142
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	213, 260, 380, 481
HpyF3I	CTNAG	2 cut(s)	225, 486
Hsp92I	GRCGYC	2 cut(s)	312, 336
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	336
KasI	GGCGCC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	4 cut(s)	328, 370, 504, 508
LmnI	GCTCC	2 cut(s)	325, 448
LpnPI	CCDG	6 cut(s)	172, 183, 220, 270, 363, 371
Lsp1109I	GCAGC	2 cut(s)	72, 197
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	4 cut(s)	330, 372, 506, 510
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	4 cut(s)	328, 370, 504, 508
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	15, 498
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	8 cut(s)	29, 124, 127, 130, 133, 300, 326, 346
MroI	TCCGGA	1 cut(s)	349
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	2 cut(s)	170, 350
MspR9I	CCNGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	131
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	4 cut(s)	328, 370, 504, 508
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	337, 414
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	62, 130, 212
Ple19I	CGATCG	1 cut(s)	331
PleI	GAGTC	1 cut(s)	136
PluTI	GGCGCC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	136
PspEI	GGTNACC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	337, 414
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	139
SatI	GCNGC	3 cut(s)	61, 129, 211
Sau3AI	GATC	4 cut(s)	328, 370, 504, 508
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	91, 212, 306, 453, 518
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	211
SfoI	GGCGCC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SpeI	ACTAGT	1 cut(s)	151
Sse9I	AATT	2 cut(s)	15, 498
SsiI	CCGC	3 cut(s)	126, 129, 323
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	4 cut(s)	140, 327, 331, 507
TasI	AATT	2 cut(s)	15, 498
TauI	GCSGC	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	2 cut(s)	60, 210
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.