Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

38735618 .. 38739098

Gene Structure 3481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGGCCTCTGCAACTGCAACAATTTCGTTATGCTCTACCTTCGCAACCCATTGCAAAATCTCGCAAAACCTTCAAACTCCGGCAACCCATTTCAGCTTTCCGTCTCTCTCCTCTTCTTCTTCCCACAAGCTGTCTTCTTGCTCTTTACGGCGACCCACATTCCCGCTTCTGATCAAGTCGTCGGAGTCGGATTCAGCCGTGGTCGTCGAGGCCGAGTTTCAAGCTCCCGAACCAGAGGCCGGGCCCGATGATTCGGAGCCAGCGGCCTTGCAAGTCGTGGAAACCCCTTCGTCGGAGGCCCCAAAACGAGAGCAGCTGTTCGGCGTTGTCATGATCGGTGGGCGCCAGTACATTGTCATTCCTGGACGATTTATCTATACTCAGCGGCTAAAAGGCGCTAATGTCAACGACAAGATTGTTCTCAACAAAGTGTTGCTGGTGGGGACTAAAACAAGTACGTACATTGGAAAGCCAGTGGTGACAAATGCCGCTGTACATGCTGTCGTTGAAGAGCAGGGACTTAATGACAAAGTGGTTGTCTTCAAGTATAAAAAGAAGAAAAATTATAGGAGAAACATCGGTCACCGACAGCCGAATACGCGCATAAGGATAACAGCGATAACAGGCTACCAAGACTATCCAGCAGTTACTCTTGAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

222

Amino Acids

24.09

Weight (kDa)

9.44

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	108 - 208	5.7e-31	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AccII	CGCG	1 cut(s)	604
AciI	CCGC	5 cut(s)	5, 167, 266, 388, 492
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	4 cut(s)	353, 460, 464, 498
AfiI	CCNNNNNNNGG	2 cut(s)	242, 295
AgsI	TTSAA	4 cut(s)	77, 224, 512, 547
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	4 cut(s)	99, 133, 227, 319
AluI	AGCT	4 cut(s)	99, 133, 227, 319
Alw26I	GTCTC	1 cut(s)	111
AoxI	GGCC	6 cut(s)	6, 213, 240, 245, 267, 300
ApaI	GGGCCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
AspLEI	GCGC	3 cut(s)	348, 401, 606
AspS9I	GGNCC	3 cut(s)	245, 246, 301
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	493, 578
BaeGI	GKGCMC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	129, 535
BbvI	GCAGC	1 cut(s)	328
BceAI	ACGGC	2 cut(s)	167, 185
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	111
BfoI	RGCGCY	2 cut(s)	349, 402
BisI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
BlsI	GCNGC	5 cut(s)	7, 268, 318, 390, 493
Bme1390I	CCNGG	2 cut(s)	244, 366
BmgT120I	GGNCC	3 cut(s)	245, 246, 301
BmiI	GGNNCC	4 cut(s)	247, 261, 303, 347
BmrFI	CCNGG	2 cut(s)	244, 366
BpiI	GAAGAC	2 cut(s)	129, 535
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 295
Bse1I	ACTGG	2 cut(s)	349, 476
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	242, 295
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	2 cut(s)	349, 476
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	604
BshFI	GGCC	6 cut(s)	8, 215, 242, 247, 269, 302
BshNI	GGYRCC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	83, 243
BslFI	GGGAC	2 cut(s)	460, 534
BslI	CCNNNNNNNGG	2 cut(s)	242, 295
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	460, 534
BsnI	GGCC	6 cut(s)	8, 215, 242, 247, 269, 302
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	174, 336
BspACI	CCGC	5 cut(s)	5, 167, 266, 388, 492
BspANI	GGCC	6 cut(s)	8, 215, 242, 247, 269, 302
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	604
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	4 cut(s)	247, 261, 303, 347
BspQI	GCTCTTC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	349, 476
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	174, 336
BssNI	GRCGYC	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	366
Bst6I	CTCTTC	2 cut(s)	121, 507
BstACI	GRCGYC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	201
BstEII	GGTNACC	1 cut(s)	584
BstFNI	CGCG	1 cut(s)	604
BstH2I	RGCGCY	2 cut(s)	349, 402
BstHHI	GCGC	3 cut(s)	348, 401, 606
BstKTI	GATC	2 cut(s)	177, 339
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	2 cut(s)	174, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 500, 601
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	503
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	2 cut(s)	242, 364
BstSLI	GKGCMC	1 cut(s)	249
BstSNI	TACGTA	1 cut(s)	462
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	2 cut(s)	129, 535
BsuRI	GGCC	6 cut(s)	8, 215, 242, 247, 269, 302
BtgI	CCRYGG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	264
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	3 cut(s)	348, 401, 606
Cfr13I	GGNCC	3 cut(s)	245, 246, 301
Csp6I	GTAC	4 cut(s)	352, 459, 463, 497
CviAII	CATG	2 cut(s)	334, 500
CviQI	GTAC	4 cut(s)	352, 459, 463, 497
DdeI	CTNAG	1 cut(s)	384
DinI	GGCGCC	1 cut(s)	347
DpnI	GATC	2 cut(s)	176, 338
DpnII	GATC	2 cut(s)	174, 336
Eam1104I	CTCTTC	2 cut(s)	121, 507
EarI	CTCTTC	2 cut(s)	121, 507
Eco105I	TACGTA	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	249
Eco91I	GGTNACC	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	347
EheI	GGCGCC	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	2 cut(s)	337, 503
FaiI	YATR	7 cut(s)	34, 335, 381, 501, 552, 570, 608
FaqI	GGGAC	2 cut(s)	460, 534
FatI	CATG	2 cut(s)	333, 499
FauI	CCCGC	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
GlaI	GCGC	3 cut(s)	347, 400, 605
GluI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
HaeII	RGCGCY	2 cut(s)	349, 402
HaeIII	GGCC	6 cut(s)	8, 215, 242, 247, 269, 302
HapII	CCGG	2 cut(s)	83, 243
HhaI	GCGC	3 cut(s)	348, 401, 606
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	2 cut(s)	337, 503
Hin6I	GCGC	3 cut(s)	346, 399, 604
HinP1I	GCGC	3 cut(s)	346, 399, 604
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	4 cut(s)	188, 194, 254, 659
HpaII	CCGG	2 cut(s)	83, 243
HphI	GGTGA	2 cut(s)	493, 578
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	5 cut(s)	174, 187, 193, 259, 298
Hpy188III	TCNNGA	3 cut(s)	230, 334, 656
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	3 cut(s)	187, 212, 298
HpyAV	CCTTC	3 cut(s)	52, 83, 300
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	4 cut(s)	14, 20, 57, 274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 500, 601
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	461
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	337, 503
HspAI	GCGC	3 cut(s)	346, 399, 604
KasI	GGCGCC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	174, 336
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	2 cut(s)	232, 259
Lsp1109I	GCAGC	1 cut(s)	328
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	481, 584, 649
MalI	GATC	2 cut(s)	176, 338
MboI	GATC	2 cut(s)	174, 336
MboII	GAAGA	7 cut(s)	108, 111, 114, 129, 524, 535, 571
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	24, 565
Mly113I	GGCGCC	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	3 cut(s)	165, 171, 276
MnlI	CCTC	5 cut(s)	19, 124, 205, 232, 292
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	4 cut(s)	266, 319, 388, 494
MspI	CCGG	2 cut(s)	83, 243
MspR9I	CCNGG	2 cut(s)	244, 366
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	3 cut(s)	11, 500, 601
NarI	GGCGCC	1 cut(s)	346
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	174, 336
NlaIII	CATG	2 cut(s)	337, 503
NlaIV	GGNNCC	4 cut(s)	247, 261, 303, 347
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	2 cut(s)	481, 584
NspI	RCATGY	1 cut(s)	503
PagI	TCATGA	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	194, 254
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	7, 268, 318, 390, 493
PleI	GAGTC	1 cut(s)	196
PluTI	GGCGCC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	364
PspEI	GGTNACC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	4 cut(s)	247, 261, 303, 347
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	3 cut(s)	245, 246, 301
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	4 cut(s)	353, 460, 464, 498
RsaNI	GTAC	4 cut(s)	352, 459, 463, 497
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
Sau3AI	GATC	2 cut(s)	174, 336
Sau96I	GGNCC	3 cut(s)	245, 246, 301
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	244, 366
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	44, 75, 101, 135, 229, 321, 464
SfoI	GGCGCC	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SnaBI	TACGTA	1 cut(s)	462
Sse9I	AATT	2 cut(s)	24, 565
SsiI	CCGC	5 cut(s)	5, 167, 266, 388, 492
SspDI	GGCGCC	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	242, 364
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	210
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	2 cut(s)	24, 565
TatI	WGTACW	2 cut(s)	351, 496
TauI	GCSGC	4 cut(s)	8, 269, 391, 494
TfiI	GAWTC	2 cut(s)	194, 254
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	2 cut(s)	481, 584
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	2 cut(s)	481, 584
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	483
XceI	RCATGY	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.