Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Forward (+)

2132285 .. 2138764

Gene Structure 6480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3696 bp

ATGGCGGCACCATTTCCTGCTGGTGGAGGTGGAGTTGTGGCGGTAATGGCTGGACCCTTAGCCCCGCTCGATCCTTCTCCGTCCAAGACTTGCCTGAAGAGCTCGGCGCACAAGTCGCCGATCCTCATCTTCTTGCTGTTTCACAAGGCTATTCGCTCCGAGCTCGATGGCCTCCACCGAGCCGCCATGGCCTTCGCCACCAGCGAAGGCTCCGCCGCTGGAATTCAGCCCTTGCTGGAGCGCTACCACTTCCTCCGCGCTATTTATAAGCACCATTGCAATGCCGAGGACGAGGTCATATTTCCAGCTCTCGATATACGGGTGAAGAATGTGGCTCGAACGTATTCTCTTGAACACGAGGGAGAGAGCGTTCTTTTCGATCAATTGTTTGAGCTGCTAAACTCCGATAAACAAAATGAGGAGAGCTACCGGAGAGAGTTGGCTTCTTGTACTGGAGCCATCCAAACATCAATCAGCCAGCATATGTCCAAGGAAGAGGAACAGGTCTTCCCTTTGCTTATTGAGAAGTTTTCATTTGAGGAGCAAGCTTCCTTGGTGTGGCAGTTTCTGTGTAGTATTCCTGTTAACATGATGGCGGAATTTCTTCCATGGCTCTCTTCCTCCATATCATCTGACGAACATCAGGATATGCGCAAGTACTTGAGCAAAGTAATACCAGAAGAGAAGCTTCTGCAGCAGGTTGTATTTGCCTGGATGGAAGGGGAAAATGTTTCTCAGGGAAAAGGTAATTCCAAGGGGCAATTTCAAGATTCTGTAAATAAGGGGAAGTGCGTGTGCGAATCTTCCAGGACTTGTAAAAGGAAACGTGCGGACGTACAATCTGATAATTCCAGCACCATTGTTTTGAATCCGATAGATGAAATACTTTTTTGGCACAATGCTATAAAAAGAGAGTTAAGTGACATAGCTGAGGCCGTTAGGAGGATACAACTTTCTAAAGATTTTTCTGATTTGTCTGCATTCAACAAGAGGTTGCAGTTCATTGCAGAAGTTTGTATTTTCCATAGCATTGCTGAGGACAAAGTTATATTCCCTTCTCTAGATGCAGAACTCAATTTTGCTCACGAGCATGCAGAAGAAGAAATTCAATTTGACAAGCTTAGGTGCCTCATGGAAAGCATCCAGAGGGCAGGAGCTAACTCATCCACTTCTGAATTTTATATGAAGTTATGCTCTCATGCTGATCAGATAATAGATGGCATACTGAAGCACTTCCAGAATGAGGAACTTCAGGTCCTTCCACTTGCTCGTAAGCATTTTAGCCCCAAAAGACAGCGGGTTCTTATGTATCAAAGCTTATGCATGATGCCCTTGAAGTTGATTGAGTGTGTCTTGCCATGGTTGGTAGGATCGCTTACTGAAAAGGAAGCAAGTTCCTTTCTTCAAAATCTTCGAATAGCAGCTCCAGCATCAGATTCAGCACTGGTTACTCTTTTTTCTGGCTGGGCATGCAAAGGTCGTTCTGCAAACATTTGTTTGTCTTCAAGTGCAATCAGTTGTCCTCCAAGGACATTGAATGAAACCGAAGAAGACATTAGCTATAAATCACTATGTTTGTGCACCTCTATGTATTCTGCTAGGGAAAGGCCTTTGTGCAATCAAATAGATGGAGCACATGACAATCTAAGGCCAGTCAAGAGCGTAAACTCAGTATCAGAAACTTTTGCTTGCCAGCCTATAGAAAGTATAAATACCCTTCAAAGTTCTTGCAGTAACCAGACATGCTGTGTCCCGGGGTTAGGAGTAAATGACTGTAGCTTAGGAGTGGGTTCTCTTACTCCGGCAAAATCTCTGCGTGCCTTATCTTTTAATCCTTCTACTCTTCCGCTTAACTCCAGTCTTTTTAACTGGGAAACAGATACCAGCTCTACTGACGCTAGTAGTACAGCACGACCTATTGATAACATATTTAAGTTCCATAAAGCTATACGTAAGGACTTGGAGTATTTGGATGTTGAATCTGGAAAGCTTAATGGTTGTAATGATGCTTTTATTAGGCATTTTACCGGTAGGTTTCGTTTGTTATGGGGTCTATATAGAGCTCATAGTAATGCAGAGGACGATATTGTATTTCCAGCATTAGAAGCCAAAGAGACTCTTCATAATGTTAGCCATGCTTACACTCTAGATCACAAGCAGGAAGAGAAACTGTTTGAGGATATTTCTTCTGTTCTTTCTGAGCTTTCACAACTTAATGAATTGATGAGTACTAGAAATGTATCTAATGATTCAACTCGAAGTAGCTTGGATTCTTTCGAGAGTGATGATACGCTGAGAAAGTACAATGGACTAGCCACGAAACTTCAGGGCATGTGCAAATCCATAAGAGTGACATTGGATCACCATGTTTTCCGTGAAGAACTTGAACTGTGGCCATTGTTTGATAAACATTTTTCTGTGGAAGAACAAGATAAAATTGTTGGTAGAATAATTGGTACTACAGGAGCAGAGGTTCTTCAATCAATGTTGCCGTGGGTAACTGATGCTCTTACTCAGCAAGAGCAAAATAAATTGATGGAAACATGGAAGCAAGCAACCAAAAATACTATGTTCAGTGAGTGGCTTAATGAATGGTGGGATGGAACTCCAGCTGCATCTTCCCATACAGAAACACCAGAAAGTTGCACATCTTTAGGTGCAGAGGCCTCTGAAAGCTTCGAACATACTGATGACACATTTAAACCTGGATGGAAAGATATATTTAGGATGAATCAGAATGAGCTTGAATCAGAAGTAAGAAAAGTTTCTCGGGATTCAACTCTTGATCCAAGAAGAAAAGCATATCTGCTTCAAAATCTAATGACCAGTCGATGGATAGCTTCTCAGCAGAAGTCCCCTCAAGCATCTGCAGTCAAAGGTTCAAATGGTGAAGATTTGGTTGGATGTTCACCGTCATTTCGTGATTCAGAGAAACAAGTGTTTGGATGTGAGCATTATAAAAGAAATTGCAAACTCCGTGCTGCTTGCTGTGGCAAGTTATTTACATGTAGGTTCTGCCATGATAACGTGAGCGACCATTCAATGGATCGGAAGGCTACATCTGAAATGATGTGCATGCGCTGCTTGAAAATTCAGCCTGTTGGACCAGTCTGCACAACACCTTCCTGTAATGGATTCTCGATGGCACAGTACTATTGTAGTGTTTGCAAGTTTTTTGATGATGAAAGGACTGTTTATCATTGTCCTTCCTGCAATTTATGTCGTGTTGGGAAGGGACTTGGCATCGACTTCTTTCATTGCATGACGTGCAATTGTTGCCTGGGGATGAAGTTACTGGATCACAAATGCAGGGAAAAAGGTCTTGAAATAAACTGTCCCATCTGCTGCGACTTTTTGTTTACCTCAAGTGCAACTGTGAGAGCTCTTCCTTGTGGCCATTACATGCATTCAGCTTGCTTCCAGGCATACACTTGCAGTCACTACATCTGCCCAATCTGTAGCAAATCTATGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCACTACTGGCTTCCGAGGAACTCCCAGAAGAATACAGGGATCGCTGTCAGGACATACTGTGCAACGACTGTGATAAGAAGGGGACCGCGCCGTTCCACTGGCTGTACCATAAGTGCAGGACTTGTGGATCCTATAACACCAAGATTATCAGGGTAGACTCCAACTCCCACTGCTTAACATCACACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1232

Amino Acids

138.51

Weight (kDa)

5.94

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	44 - 173	8.9e-11	Hemerythrin HHE cation binding domain
Hemerythrin	PF01814	639 - 799	8.1e-06	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	983 - 1051	5.3e-19	CHY zinc finger
zf-RING_2	PF13639	1111 - 1153	2.1e-06	Ring finger domain
zinc_ribbon_6	PF14599	1159 - 1216	8.7e-24	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 2958
Acc16I	TGCGCA	1 cut(s)	653
Acc36I	ACCTGC	1 cut(s)	688
AccB1I	GGYRCC	2 cut(s)	7, 1125
AccB7I	CCANNNNNTGG	2 cut(s)	2832, 3043
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	3660
AccII	CGCG	2 cut(s)	258, 3593
AcoI	YGGCCR	2 cut(s)	2393, 3394
AcsI	RAATTY	5 cut(s)	222, 599, 1104, 1175, 3090
AcuI	CTGAAG	4 cut(s)	116, 1235, 1247, 2309
AfaI	GTAC	9 cut(s)	451, 659, 837, 1906, 2230, 2303, 2458, 3152, 3611
AfeI	AGCGCT	1 cut(s)	242
AfiI	CCNNNNNNNGG	7 cut(s)	23, 558, 942, 1243, 1760, 2832, 3043
AflIII	ACRYGT	1 cut(s)	3005
AgeI	ACCGGT	1 cut(s)	2027
AjiI	CACGTC	1 cut(s)	3267
AjnI	CCWGG	5 cut(s)	710, 806, 2704, 3279, 3420
AjuI	GAANNNNNNNTTGG	2 cut(s)	2883, 2915
AloI	GAACNNNNNNTCC	8 cut(s)	354, 386, 492, 524, 1239, 1271, 2457, 2489
Alw21I	GWGCWC	6 cut(s)	104, 165, 1583, 1636, 2065, 3385
Alw26I	GTCTC	1 cut(s)	2108
Alw44I	GTGCAC	1 cut(s)	1579
AlwNI	CAGNNNCTG	1 cut(s)	568
Ama87I	CYCGRG	2 cut(s)	1753, 2769
Aor51HI	AGCGCT	1 cut(s)	242
AoxI	GGCC	8 cut(s)	169, 189, 933, 1607, 1649, 2393, 2664, 3394
ApaLI	GTGCAC	1 cut(s)	1579
ApeKI	GCWGC	7 cut(s)	394, 694, 1421, 2612, 2981, 3081, 3345
ApoI	RAATTY	5 cut(s)	222, 599, 1104, 1175, 3090
AsiGI	ACCGGT	1 cut(s)	2027
Asp700I	GAANNNNTTC	5 cut(s)	343, 603, 1104, 1232, 2764
AspLEI	GCGC	6 cut(s)	109, 243, 260, 654, 3081, 3595
AspS9I	GGNCC	4 cut(s)	53, 1255, 3104, 3588
AsuC2I	CCSGG	2 cut(s)	1754, 1755
AsuHPI	GGTGA	4 cut(s)	334, 2354, 2900, 2901
AsuII	TTCGAA	2 cut(s)	1414, 2679
AvaI	CYCGRG	2 cut(s)	1753, 2769
AvaII	GGWCC	4 cut(s)	53, 1255, 3104, 3588
BaeGI	GKGCMC	1 cut(s)	1583
BalI	TGGCCA	2 cut(s)	2395, 3396
BamHI	GGATCC	1 cut(s)	3632
BanI	GGYRCC	2 cut(s)	7, 1125
BanII	GRGCYC	4 cut(s)	104, 165, 2065, 3385
BauI	CACGAG	2 cut(s)	356, 1085
BbsI	GAAGAC	3 cut(s)	499, 1494, 1557
Bbv12I	GWGCWC	6 cut(s)	104, 165, 1583, 1636, 2065, 3385
BbvCI	CCTCAGC	2 cut(s)	930, 1035
BbvI	GCAGC	7 cut(s)	381, 706, 1433, 2599, 2968, 3068, 3332
BceAI	ACGGC	3 cut(s)	920, 2476, 3580
BciT130I	CCWGG	5 cut(s)	712, 808, 2706, 3281, 3422
BciVI	GTATCC	1 cut(s)	939
BclI	TGATCA	1 cut(s)	1204
BcnI	CCSGG	2 cut(s)	1754, 1755
BcoDI	GTCTC	1 cut(s)	2108
BfaI	CTAG	6 cut(s)	1061, 1599, 1899, 2147, 2232, 2312
BfmI	CTRYAG	6 cut(s)	692, 1698, 1774, 2460, 2868, 3457
BfoI	RGCGCY	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	939
BglI	GCCNNNNNGGC	1 cut(s)	188
BmcAI	AGTACT	3 cut(s)	659, 2230, 3152
Bme1390I	CCNGG	7 cut(s)	712, 808, 1754, 1755, 2706, 3281, 3422
Bme18I	GGWCC	4 cut(s)	53, 1255, 3104, 3588
BmeT110I	CYCGRG	2 cut(s)	1753, 2769
BmgBI	CACGTC	1 cut(s)	3267
BmgT120I	GGNCC	4 cut(s)	53, 1255, 3104, 3588
BmiI	GGNNCC	7 cut(s)	9, 55, 211, 457, 1127, 3589, 3634
BmrFI	CCNGG	7 cut(s)	712, 808, 1754, 1755, 2706, 3281, 3422
BmrI	ACTGGG	1 cut(s)	1879
BmuI	ACTGGG	1 cut(s)	1879
BpiI	GAAGAC	3 cut(s)	499, 1494, 1557
BpmI	CTGGAG	5 cut(s)	257, 474, 1410, 1840, 2592
Bpu10I	CCTNAGC	5 cut(s)	58, 930, 1035, 1121, 1780
Bpu14I	TTCGAA	2 cut(s)	1414, 2679
BpuEI	CTTGAG	3 cut(s)	682, 2844, 3349
BpuMI	CCSGG	2 cut(s)	1754, 1755
BsaAI	YACGTR	1 cut(s)	1952
BsaBI	GATNNNNATC	1 cut(s)	125
BsaWI	WCCGGW	2 cut(s)	429, 2027
BsaXI	ACNNNNNCTCC	8 cut(s)	18, 48, 354, 384, 2457, 2487, 3653, 3683
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 558, 942, 1243, 1760, 2832, 3043
Bse118I	RCCGGY	1 cut(s)	2027
Bse3DI	GCAATG	5 cut(s)	274, 286, 1002, 1029, 3256
Bse8I	GATNNNNATC	1 cut(s)	125
BseBI	CCWGG	5 cut(s)	712, 808, 2706, 3281, 3422
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	7 cut(s)	23, 558, 942, 1243, 1760, 2832, 3043
BseMI	GCAATG	5 cut(s)	274, 286, 1002, 1029, 3256
BseMII	CTCAG	8 cut(s)	749, 921, 1026, 1683, 2190, 2285, 2528, 2858
BseRI	GAGGAG	2 cut(s)	434, 554
BseSI	GKGCMC	1 cut(s)	1583
BseXI	GCAGC	7 cut(s)	381, 706, 1433, 2599, 2968, 3068, 3332
BseYI	CCCAGC	1 cut(s)	1464
BsgI	GTGCAG	3 cut(s)	2679, 3097, 3640
Bsh1236I	CGCG	2 cut(s)	258, 3593
BshFI	GGCC	8 cut(s)	171, 191, 935, 1609, 1651, 2395, 2666, 3396
BshNI	GGYRCC	2 cut(s)	7, 1125
BshTI	ACCGGT	1 cut(s)	2027
BsiHKAI	GWGCWC	6 cut(s)	104, 165, 1583, 1636, 2065, 3385
BsiHKCI	CYCGRG	2 cut(s)	1753, 2769
BsiSI	CCGG	4 cut(s)	430, 1754, 1802, 2028
BslFI	GGGAC	5 cut(s)	1736, 2839, 3249, 3321, 3601
BslI	CCNNNNNNNGG	7 cut(s)	23, 558, 942, 1243, 1760, 2832, 3043
BsmAI	GTCTC	1 cut(s)	2108
BsmFI	GGGAC	5 cut(s)	1736, 2839, 3249, 3321, 3601
BsmI	GAATGC	2 cut(s)	980, 3406
BsnI	GGCC	8 cut(s)	171, 191, 935, 1609, 1651, 2395, 2666, 3396
BsoBI	CYCGRG	2 cut(s)	1753, 2769
Bsp119I	TTCGAA	2 cut(s)	1414, 2679
Bsp1286I	GDGCHC	6 cut(s)	104, 165, 1583, 1636, 2065, 3385
Bsp19I	CCATGG	3 cut(s)	186, 608, 1358
BspANI	GGCC	8 cut(s)	171, 191, 935, 1609, 1651, 2395, 2666, 3396
BspCNI	CTCAG	8 cut(s)	748, 922, 1027, 1682, 2191, 2286, 2527, 2857
BspFNI	CGCG	2 cut(s)	258, 3593
BspLI	GGNNCC	7 cut(s)	9, 55, 211, 457, 1127, 3589, 3634
BspMAI	CTGCAG	2 cut(s)	696, 2872
BspMI	ACCTGC	1 cut(s)	688
BspQI	GCTCTTC	2 cut(s)	92, 3390
BspT104I	TTCGAA	2 cut(s)	1414, 2679
BspT107I	GGYRCC	2 cut(s)	7, 1125
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	5 cut(s)	274, 286, 1002, 1029, 3256
BsrFI	RCCGGY	1 cut(s)	2027
BssAI	RCCGGY	1 cut(s)	2027
BssSI	CACGAG	2 cut(s)	356, 1085
BssT1I	CCWWGG	7 cut(s)	186, 489, 552, 608, 753, 1358, 1526
Bst2BI	CACGAG	2 cut(s)	356, 1085
Bst2UI	CCWGG	5 cut(s)	712, 808, 2706, 3281, 3422
Bst6I	CTCTTC	8 cut(s)	92, 489, 622, 675, 1848, 2124, 2157, 3390
BstAPI	GCANNNNNTGC	3 cut(s)	3081, 3267, 3276
BstBAI	YACGTR	1 cut(s)	1952
BstBI	TTCGAA	2 cut(s)	1414, 2679
BstDSI	CCRYGG	4 cut(s)	186, 608, 1358, 2492
BstFNI	CGCG	2 cut(s)	258, 3593
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	6 cut(s)	109, 243, 260, 654, 3081, 3595
BstMAI	GTCTC	1 cut(s)	2108
BstNI	CCWGG	5 cut(s)	712, 808, 2706, 3281, 3422
BstNSI	RCATGY	8 cut(s)	1094, 1473, 1746, 2335, 3009, 3079, 3406, 3499
BstSCI	CCNGG	7 cut(s)	710, 806, 1752, 1753, 2704, 3279, 3420
BstSFI	CTRYAG	6 cut(s)	692, 1698, 1774, 2460, 2868, 3457
BstSLI	GKGCMC	1 cut(s)	1583
BstSNI	TACGTA	1 cut(s)	1952
BstUI	CGCG	2 cut(s)	258, 3593
BstV1I	GCAGC	7 cut(s)	381, 706, 1433, 2599, 2968, 3068, 3332
BstV2I	GAAGAC	3 cut(s)	499, 1494, 1557
BstX2I	RGATCY	1 cut(s)	3632
BstYI	RGATCY	1 cut(s)	3632
BsuI	GTATCC	1 cut(s)	939
BsuRI	GGCC	8 cut(s)	171, 191, 935, 1609, 1651, 2395, 2666, 3396
BtgI	CCRYGG	4 cut(s)	186, 608, 1358, 2492
BtrI	CACGTC	1 cut(s)	3267
BtsI	GCAGTG	1 cut(s)	3673
BtsIMutI	CAGTG	4 cut(s)	1442, 2581, 3601, 3673
BveI	ACCTGC	1 cut(s)	688
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	6 cut(s)	109, 243, 260, 654, 3081, 3595
Cfr10I	RCCGGY	1 cut(s)	2027
Cfr13I	GGNCC	4 cut(s)	53, 1255, 3104, 3588
Cfr9I	CCCGGG	1 cut(s)	1753
CseI	GACGC	1 cut(s)	1904
Csp6I	GTAC	9 cut(s)	450, 658, 836, 1905, 2229, 2302, 2457, 3151, 3610
CspAI	ACCGGT	1 cut(s)	2027
CviQI	GTAC	9 cut(s)	450, 658, 836, 1905, 2229, 2302, 2457, 3151, 3610
DraI	TTTAAA	1 cut(s)	2701
EaeI	YGGCCR	2 cut(s)	2393, 3394
Eam1104I	CTCTTC	8 cut(s)	92, 489, 622, 675, 1848, 2124, 2157, 3390
EarI	CTCTTC	8 cut(s)	92, 489, 622, 675, 1848, 2124, 2157, 3390
EciI	GGCGGA	2 cut(s)	202, 611
Ecl136II	GAGCTC	4 cut(s)	102, 163, 2063, 3383
Eco105I	TACGTA	1 cut(s)	1952
Eco130I	CCWWGG	7 cut(s)	186, 489, 552, 608, 753, 1358, 1526
Eco147I	AGGCCT	2 cut(s)	1609, 2666
Eco24I	GRGCYC	4 cut(s)	104, 165, 2065, 3385
Eco47I	GGWCC	4 cut(s)	53, 1255, 3104, 3588
Eco47III	AGCGCT	1 cut(s)	242
Eco53kI	GAGCTC	4 cut(s)	102, 163, 2063, 3383
Eco57I	CTGAAG	4 cut(s)	116, 1235, 1247, 2309
Eco88I	CYCGRG	2 cut(s)	1753, 2769
EcoICRI	GAGCTC	4 cut(s)	102, 163, 2063, 3383
EcoO109I	RGGNCCY	1 cut(s)	1255
EcoRI	GAATTC	1 cut(s)	222
EcoRII	CCWGG	5 cut(s)	710, 806, 2704, 3279, 3420
EcoT14I	CCWWGG	7 cut(s)	186, 489, 552, 608, 753, 1358, 1526
EcoT22I	ATGCAT	2 cut(s)	1325, 3408
EcoT38I	GRGCYC	4 cut(s)	104, 165, 2065, 3385
ErhI	CCWWGG	7 cut(s)	186, 489, 552, 608, 753, 1358, 1526
FalI	AAGNNNNNCTT	4 cut(s)	672, 704, 2103, 2135
FaqI	GGGAC	5 cut(s)	1736, 2839, 3249, 3321, 3601
FauI	CCCGC	2 cut(s)	72, 1290
FauNDI	CATATG	1 cut(s)	483
FbaI	TGATCA	1 cut(s)	1204
FblI	GTMKAC	1 cut(s)	3660
FriOI	GRGCYC	4 cut(s)	104, 165, 2065, 3385
FspBI	CTAG	6 cut(s)	1061, 1599, 1899, 2147, 2232, 2312
FspI	TGCGCA	1 cut(s)	653
GlaI	GCGC	6 cut(s)	108, 242, 259, 653, 3080, 3594
GsaI	CCCAGC	1 cut(s)	1468
GsuI	CTGGAG	5 cut(s)	257, 474, 1410, 1840, 2592
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	8 cut(s)	171, 191, 935, 1609, 1651, 2395, 2666, 3396
HapII	CCGG	4 cut(s)	430, 1754, 1802, 2028
HgaI	GACGC	1 cut(s)	1904
HhaI	GCGC	6 cut(s)	109, 243, 260, 654, 3081, 3595
Hin6I	GCGC	6 cut(s)	107, 241, 258, 652, 3079, 3593
HinP1I	GCGC	6 cut(s)	107, 241, 258, 652, 3079, 3593
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	6 cut(s)	546, 686, 1118, 1315, 1988, 2674
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	4 cut(s)	430, 1754, 1802, 2028
HphI	GGTGA	4 cut(s)	334, 2354, 2900, 2901
Hpy166II	GTNNAC	6 cut(s)	586, 1581, 1666, 2909, 3360, 3661
Hpy8I	GTNNAC	6 cut(s)	586, 1581, 1666, 2909, 3360, 3661
HpyCH4IV	ACGT	6 cut(s)	341, 826, 834, 1951, 3027, 3266
HpySE526I	ACGT	6 cut(s)	341, 826, 834, 1951, 3027, 3266
HspAI	GCGC	6 cut(s)	107, 241, 258, 652, 3079, 3593
Ksp22I	TGATCA	1 cut(s)	1204
KspAI	GTTAAC	1 cut(s)	586
LguI	GCTCTTC	2 cut(s)	92, 3390
LmnI	GCTCC	9 cut(s)	161, 215, 238, 455, 541, 1154, 1429, 1631, 2465
Lsp1109I	GCAGC	7 cut(s)	381, 706, 1433, 2599, 2968, 3068, 3332
MaeI	CTAG	6 cut(s)	1061, 1599, 1899, 2147, 2232, 2312
MaeII	ACGT	6 cut(s)	341, 826, 834, 1951, 3027, 3266
MaeIII	GTNAC	7 cut(s)	920, 1447, 1733, 2350, 2497, 3291, 3437
MbiI	CCGCTC	1 cut(s)	67
MfeI	CAATTG	2 cut(s)	383, 3271
MflI	RGATCY	1 cut(s)	3632
MhlI	GDGCHC	6 cut(s)	104, 165, 1583, 1636, 2065, 3385
MlsI	TGGCCA	2 cut(s)	2395, 3396
MluNI	TGGCCA	2 cut(s)	2395, 3396
MlyI	GAGTC	2 cut(s)	2110, 3656
MmeI	TCCRAC	3 cut(s)	2881, 3082, 3690
Mox20I	TGGCCA	2 cut(s)	2395, 3396
Mph1103I	ATGCAT	2 cut(s)	1325, 3408
MroXI	GAANNNNTTC	5 cut(s)	343, 603, 1104, 1232, 2764
MscI	TGGCCA	2 cut(s)	2395, 3396
MslI	CAYNNNNRTG	6 cut(s)	279, 1089, 1586, 2070, 2348, 2688
Msp20I	TGGCCA	2 cut(s)	2395, 3396
MspA1I	CMGCKG	3 cut(s)	218, 1297, 2612
MspI	CCGG	4 cut(s)	430, 1754, 1802, 2028
MspR9I	CCNGG	7 cut(s)	712, 808, 1754, 1755, 2706, 3281, 3422
MunI	CAATTG	2 cut(s)	383, 3271
Mva1269I	GAATGC	2 cut(s)	980, 3406
MvaI	CCWGG	5 cut(s)	712, 808, 2706, 3281, 3422
MvnI	CGCG	2 cut(s)	258, 3593
NciI	CCSGG	2 cut(s)	1754, 1755
NcoI	CCATGG	3 cut(s)	186, 608, 1358
NdeI	CATATG	1 cut(s)	483
NlaIV	GGNNCC	7 cut(s)	9, 55, 211, 457, 1127, 3589, 3634
NmeAIII	GCCGAG	2 cut(s)	83, 310
NmuCI	GTSAC	3 cut(s)	920, 2350, 3437
NsbI	TGCGCA	1 cut(s)	653
NsiI	ATGCAT	2 cut(s)	1325, 3408
NspI	RCATGY	8 cut(s)	1094, 1473, 1746, 2335, 3009, 3079, 3406, 3499
NspV	TTCGAA	2 cut(s)	1414, 2679
PaeI	GCATGC	4 cut(s)	1094, 1473, 3079, 3499
PceI	AGGCCT	2 cut(s)	1609, 2666
PciI	ACATGT	1 cut(s)	3005
PciSI	GCTCTTC	2 cut(s)	92, 3390
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	2 cut(s)	980, 3406
PdmI	GAANNNNTTC	5 cut(s)	343, 603, 1104, 1232, 2764
PflFI	GACNNNGTC	1 cut(s)	293
PflMI	CCANNNNNTGG	2 cut(s)	2832, 3043
PfoI	TCCNGGA	1 cut(s)	806
PinAI	ACCGGT	1 cut(s)	2027
PleI	GAGTC	2 cut(s)	2110, 3656
PpsI	GAGTC	2 cut(s)	2110, 3656
Ppu21I	YACGTR	1 cut(s)	1952
PpuMI	RGGWCCY	1 cut(s)	1255
PscI	ACATGT	1 cut(s)	3005
PsiI	TTATAA	2 cut(s)	267, 2958
Psp124BI	GAGCTC	4 cut(s)	104, 165, 2065, 3385
Psp5II	RGGWCCY	1 cut(s)	1255
Psp6I	CCWGG	5 cut(s)	710, 806, 2704, 3279, 3420
PspFI	CCCAGC	1 cut(s)	1464
PspGI	CCWGG	5 cut(s)	710, 806, 2704, 3279, 3420
PspN4I	GGNNCC	7 cut(s)	9, 55, 211, 457, 1127, 3589, 3634
PspPI	GGNCC	4 cut(s)	53, 1255, 3104, 3588
PspPPI	RGGWCCY	1 cut(s)	1255
PstI	CTGCAG	2 cut(s)	696, 2872
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	3632
PsyI	GACNNNGTC	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	2612
RsaI	GTAC	9 cut(s)	451, 659, 837, 1906, 2230, 2303, 2458, 3152, 3611
RsaNI	GTAC	9 cut(s)	450, 658, 836, 1905, 2229, 2302, 2457, 3151, 3610
RseI	CAYNNNNRTG	6 cut(s)	279, 1089, 1586, 2070, 2348, 2688
SacI	GAGCTC	4 cut(s)	104, 165, 2065, 3385
SapI	GCTCTTC	2 cut(s)	92, 3390
Sau96I	GGNCC	4 cut(s)	53, 1255, 3104, 3588
ScaI	AGTACT	3 cut(s)	659, 2230, 3152
SchI	GAGTC	2 cut(s)	2110, 3656
ScrFI	CCNGG	7 cut(s)	712, 808, 1754, 1755, 2706, 3281, 3422
SduI	GDGCHC	6 cut(s)	104, 165, 1583, 1636, 2065, 3385
SfcI	CTRYAG	6 cut(s)	692, 1698, 1774, 2460, 2868, 3457
SfuI	TTCGAA	2 cut(s)	1414, 2679
SinI	GGWCC	4 cut(s)	53, 1255, 3104, 3588
SmaI	CCCGGG	1 cut(s)	1755
SmiMI	CAYNNNNRTG	6 cut(s)	279, 1089, 1586, 2070, 2348, 2688
SmlI	CTYRAG	3 cut(s)	661, 2859, 3364
SmoI	CTYRAG	3 cut(s)	661, 2859, 3364
SnaBI	TACGTA	1 cut(s)	1952
SphI	GCATGC	4 cut(s)	1094, 1473, 3079, 3499
SseBI	AGGCCT	2 cut(s)	1609, 2666
SspMI	CTAG	6 cut(s)	1061, 1599, 1899, 2147, 2232, 2312
SstI	GAGCTC	4 cut(s)	104, 165, 2065, 3385
StuI	AGGCCT	2 cut(s)	1609, 2666
StyD4I	CCNGG	7 cut(s)	710, 806, 1752, 1753, 2704, 3279, 3420
StyI	CCWWGG	7 cut(s)	186, 489, 552, 608, 753, 1358, 1526
TaiI	ACGT	6 cut(s)	344, 829, 837, 1954, 3030, 3269
TatI	WGTACW	6 cut(s)	449, 657, 1904, 2228, 2301, 3150
TauI	GCSGC	3 cut(s)	8, 185, 218
TscAI	CASTG	4 cut(s)	1449, 2581, 3608, 3680
TseFI	GTSAC	3 cut(s)	920, 2350, 3437
TseI	GCWGC	7 cut(s)	394, 694, 1421, 2612, 2981, 3081, 3345
Tsp45I	GTSAC	3 cut(s)	920, 2350, 3437
TspGWI	ACGGA	3 cut(s)	69, 2363, 2966
TspMI	CCCGGG	1 cut(s)	1753
TspRI	CASTG	4 cut(s)	1449, 2581, 3608, 3680
Tth111I	GACNNNGTC	1 cut(s)	293
Van91I	CCANNNNNTGG	2 cut(s)	2832, 3043
VneI	GTGCAC	1 cut(s)	1579
VpaK11BI	GGWCC	4 cut(s)	53, 1255, 3104, 3588
XapI	RAATTY	5 cut(s)	222, 599, 1104, 1175, 3090
XbaI	TCTAGA	2 cut(s)	1060, 2146
XceI	RCATGY	8 cut(s)	1094, 1473, 1746, 2335, 3009, 3079, 3406, 3499
XmaI	CCCGGG	1 cut(s)	1753
XmiI	GTMKAC	1 cut(s)	3660
XmnI	GAANNNNTTC	5 cut(s)	343, 603, 1104, 1232, 2764
XspI	CTAG	6 cut(s)	1061, 1599, 1899, 2147, 2232, 2312
ZrmI	AGTACT	3 cut(s)	659, 2230, 3152
Zsp2I	ATGCAT	2 cut(s)	1325, 3408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.