pycom16g05100

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003407
Physical Location & Seq
Reverse (-)
3281518 .. 3282858
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 936 bp
ATGCCACATAGCCTTGCATGGCCCTACAGCTTCATGAGAAGCACGTTCAGAAATACAGAAATAAAATTAACACCATGGCCCCCAGACCAACATCTAGAAATTTGTTCAGCTTCAGTCCTCTTTATATATATAAGAATTATAGGCATCTCAAAGCCATTGAGTTTCATCTCAGGAAAAATGGGGAAAATAGGCACAAAATTGCCTAATTTCTGCCTAAACAGGATTAGGCCACACGTGAGGGTTCGTTCACCACCGATACAGTCCAAGCCAGATGTTTCAGATGTCGCTAAAAAAAGTAGTGATGGAAAATTTGAGGATTCTGGGAATGTTGGAGAAGAAGAGAAAGTGAAAGCAGCTGGTGGTGGTGGTGATGAGAACCCTAAAAAAGCTGGGTTGATAATAGCTCGGAAAATCATGATTGTGGTTGATTCCAGCCTTGAAGCCAAAGCAGCCATCCAATGGGCTCTCTCTCACACTGTGCAAAGCCAGGATAAAATTGTGCTGCTTCATGTCACCAAATCTTCAAACTCAAAACAAGCTAAAGGTGAGGAGGCCAGCAAGGAGAGAGCTCCATCTCCAAGGGCTTATGCACTTGTCCACTCTTTGAGGAACATGTGTCAGTTGAAGAGACCAGAGGTAGAAATTGAGGTTGCAGTGGTGGTGGAAGGGAATAAGGAGAAAGGTCCAACAATACTGGAAGAGGCAAAGAAACAAGAAGTGGGACTGCTTGTTCTGGGGCAGAAAAAGAAGTCTACTACATGGCATCTGCTGATGATGTGGGCCGGCAACCGGGTCGGCGGCGGCAGCGGCGGTGTGGTGGAGTACTGTATACAAAATGCCAGTTGCATGGCAGTTGCTGTGAGGAGGAAAAGCAGGAAGGTTGGAGGGTATTTGATTACTACAAAGCGCCAGAAAGATTTCTGGCTATTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

312

Amino Acids

34.27

Weight (kDa)

9.81

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 136 - 288 1.3e-17 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 459
AccI GTMKAC 2 cut(s) 752, 829
AciI CCGC 4 cut(s) 798, 801, 807, 810
AcsI RAATTY 2 cut(s) 99, 308
AcuI CTGAAG 1 cut(s) 96
AcvI CACGTG 1 cut(s) 235
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 2 cut(s) 459, 789
AflIII ACRYGT 2 cut(s) 232, 612
AgsI TTSAA 3 cut(s) 440, 525, 625
AjnI CCWGG 1 cut(s) 486
AloI GAACNNNNNNTCC 2 cut(s) 714, 746
AluBI AGCT 7 cut(s) 30, 110, 356, 389, 404, 539, 569
AluI AGCT 7 cut(s) 30, 110, 356, 389, 404, 539, 569
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 622
AlwNI CAGNNNCTG 1 cut(s) 857
AoxI GGCC 6 cut(s) 20, 77, 227, 552, 780, 930
ApeKI GCWGC 4 cut(s) 353, 449, 502, 804
ApoI RAATTY 2 cut(s) 99, 308
Asp700I GAANNNNTTC 1 cut(s) 917
AspLEI GCGC 1 cut(s) 909
AspS9I GGNCC 4 cut(s) 21, 78, 683, 780
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 4 cut(s) 240, 380, 505, 557
AvaII GGWCC 1 cut(s) 683
BanII GRGCYC 2 cut(s) 466, 571
BbrPI CACGTG 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 4 cut(s) 365, 461, 489, 816
BccI CCATC 3 cut(s) 296, 461, 580
BcgI CGANNNNNNTGC 2 cut(s) 775, 809
BciT130I CCWGG 1 cut(s) 488
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 1 cut(s) 622
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 910
BisI GCNGC 7 cut(s) 354, 450, 503, 799, 802, 805, 808
BlsI GCNGC 7 cut(s) 355, 451, 504, 800, 803, 806, 809
BmcAI AGTACT 1 cut(s) 824
Bme1390I CCNGG 2 cut(s) 488, 791
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 4 cut(s) 21, 78, 683, 780
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 2 cut(s) 488, 791
BmsI GCATC 2 cut(s) 153, 772
BpuMI CCSGG 1 cut(s) 791
BsaAI YACGTR 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 2 cut(s) 74, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 789
Bse118I RCCGGY 1 cut(s) 782
Bse1I ACTGG 2 cut(s) 699, 840
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 2 cut(s) 74, 578
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 2 cut(s) 459, 789
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 699, 840
BseRI GAGGAG 2 cut(s) 563, 877
BseXI GCAGC 4 cut(s) 365, 461, 489, 816
BseYI CCCAGC 1 cut(s) 389
BshFI GGCC 6 cut(s) 22, 79, 229, 554, 782, 932
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 2 cut(s) 783, 790
BslFI GGGAC 1 cut(s) 735
BslI CCNNNNNNNGG 2 cut(s) 459, 789
BsmAI GTCTC 1 cut(s) 622
BsmFI GGGAC 1 cut(s) 735
BsnI GGCC 6 cut(s) 22, 79, 229, 554, 782, 932
Bso31I GGTCTC 1 cut(s) 622
Bsp1286I GDGCHC 2 cut(s) 466, 571
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 4 cut(s) 798, 801, 807, 810
BspANI GGCC 6 cut(s) 22, 79, 229, 554, 782, 932
BspCNI CTCAG 1 cut(s) 182
BspHI TCATGA 2 cut(s) 33, 414
BspLI GGNNCC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 782
BsrI ACTGG 2 cut(s) 699, 840
BssAI RCCGGY 1 cut(s) 782
BssECI CCNNGG 2 cut(s) 74, 578
BssNAI GTATAC 1 cut(s) 830
BssT1I CCWWGG 2 cut(s) 74, 578
Bst1107I GTATAC 1 cut(s) 830
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 3 cut(s) 261, 478, 827
Bst6I CTCTTC 3 cut(s) 333, 620, 693
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 556, 784
BstDEI CTNAG 1 cut(s) 169
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 453
BstH2I RGCGCY 1 cut(s) 910
BstHHI GCGC 1 cut(s) 909
BstMAI GTCTC 1 cut(s) 622
BstMWI GCNNNNNNNGC 3 cut(s) 449, 804, 807
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 2 cut(s) 486, 789
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 4 cut(s) 365, 461, 489, 816
BstXI CCANNNNNNTGG 1 cut(s) 847
BstZ17I GTATAC 1 cut(s) 830
BsuRI GGCC 6 cut(s) 22, 79, 229, 554, 782, 932
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 453
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 474, 660
Cac8I GCNNGC 2 cut(s) 556, 784
CaiI CAGNNNCTG 1 cut(s) 857
CciI TCATGA 2 cut(s) 33, 414
CfoI GCGC 1 cut(s) 909
Cfr10I RCCGGY 1 cut(s) 782
Cfr13I GGNCC 4 cut(s) 21, 78, 683, 780
Csp6I GTAC 1 cut(s) 823
CviAII CATG 8 cut(s) 18, 34, 75, 415, 509, 613, 759, 847
CviQI GTAC 1 cut(s) 823
DdeI CTNAG 1 cut(s) 169
DraIII CACNNNGTG 1 cut(s) 478
Eam1104I CTCTTC 3 cut(s) 333, 620, 693
EarI CTCTTC 3 cut(s) 333, 620, 693
Ecl136II GAGCTC 1 cut(s) 569
Eco130I CCWWGG 2 cut(s) 74, 578
Eco24I GRGCYC 2 cut(s) 466, 571
Eco31I GGTCTC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 683
Eco53kI GAGCTC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 96
Eco72I CACGTG 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 486
EcoT14I CCWWGG 2 cut(s) 74, 578
EcoT38I GRGCYC 2 cut(s) 466, 571
ErhI CCWWGG 2 cut(s) 74, 578
FaeI CATG 8 cut(s) 21, 37, 78, 418, 512, 616, 762, 850
FaqI GGGAC 1 cut(s) 735
FatI CATG 8 cut(s) 17, 33, 74, 414, 508, 612, 758, 846
FblI GTMKAC 2 cut(s) 752, 829
Fnu4HI GCNGC 7 cut(s) 354, 450, 503, 799, 802, 805, 808
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 2 cut(s) 466, 571
Fsp4HI GCNGC 7 cut(s) 354, 450, 503, 799, 802, 805, 808
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 908
GluI GCNGC 7 cut(s) 354, 450, 503, 799, 802, 805, 808
GsaI CCCAGC 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 910
HaeIII GGCC 6 cut(s) 22, 79, 229, 554, 782, 932
HapII CCGG 2 cut(s) 783, 790
HhaI GCGC 1 cut(s) 909
Hin1II CATG 8 cut(s) 21, 37, 78, 418, 512, 616, 762, 850
Hin6I GCGC 1 cut(s) 907
HinP1I GCGC 1 cut(s) 907
HinfI GANTC 2 cut(s) 317, 428
HpaII CCGG 2 cut(s) 783, 790
HphI GGTGA 4 cut(s) 240, 380, 505, 557
Hpy166II GTNNAC 4 cut(s) 248, 598, 753, 830
Hpy188I TCNGA 3 cut(s) 50, 280, 408
Hpy188III TCNNGA 4 cut(s) 34, 95, 171, 415
Hpy8I GTNNAC 4 cut(s) 248, 598, 753, 830
HpyAV CCTTC 2 cut(s) 659, 871
HpyCH4III ACNGT 3 cut(s) 261, 478, 827
HpyCH4IV ACGT 2 cut(s) 44, 234
HpyCH4V TGCA 5 cut(s) 17, 481, 590, 653, 846
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 804, 807
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 2 cut(s) 44, 234
Hsp92II CATG 8 cut(s) 21, 37, 78, 418, 512, 616, 762, 850
HspAI GCGC 1 cut(s) 907
KroI GCCGGC 1 cut(s) 782
KroNI GCCGGC 1 cut(s) 784
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 4 cut(s) 365, 461, 489, 816
LweI GCATC 2 cut(s) 153, 772
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 44, 234
MaeIII GTNAC 1 cut(s) 511
MboII GAAGA 5 cut(s) 347, 350, 513, 637, 710
MhlI GDGCHC 2 cut(s) 466, 571
MluCI AATT 8 cut(s) 65, 99, 135, 197, 205, 308, 495, 642
MmeI TCCRAC 3 cut(s) 310, 710, 862
MroNI GCCGGC 1 cut(s) 782
MroXI GAANNNNTTC 1 cut(s) 917
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 2 cut(s) 356, 807
MspI CCGG 2 cut(s) 783, 790
MspR9I CCNGG 2 cut(s) 488, 791
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 3 cut(s) 449, 804, 807
NaeI GCCGGC 1 cut(s) 784
NciI CCSGG 1 cut(s) 791
NcoI CCATGG 1 cut(s) 74
NgoMIV GCCGGC 1 cut(s) 782
NlaIII CATG 8 cut(s) 21, 37, 78, 418, 512, 616, 762, 850
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 1 cut(s) 616
PagI TCATGA 2 cut(s) 33, 414
PciI ACATGT 1 cut(s) 612
PdiI GCCGGC 1 cut(s) 784
PdmI GAANNNNTTC 1 cut(s) 917
PfeI GAWTC 2 cut(s) 317, 428
PflMI CCANNNNNTGG 1 cut(s) 459
PkrI GCNGC 7 cut(s) 355, 451, 504, 800, 803, 806, 809
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 235
PscI ACATGT 1 cut(s) 612
Psp124BI GAGCTC 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 486
PspCI CACGTG 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 4 cut(s) 21, 78, 683, 780
PstNI CAGNNNCTG 1 cut(s) 857
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 571
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 7 cut(s) 354, 450, 503, 799, 802, 805, 808
Sau96I GGNCC 4 cut(s) 21, 78, 683, 780
ScaI AGTACT 1 cut(s) 824
ScrFI CCNGG 2 cut(s) 488, 791
SduI GDGCHC 2 cut(s) 466, 571
SfaNI GCATC 2 cut(s) 153, 772
SfcI CTRYAG 1 cut(s) 25
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 8 cut(s) 65, 99, 135, 197, 205, 308, 495, 642
SsiI CCGC 4 cut(s) 798, 801, 807, 810
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 571
StyD4I CCNGG 2 cut(s) 486, 789
StyI CCWWGG 2 cut(s) 74, 578
TaaI ACNGT 3 cut(s) 261, 478, 827
TaiI ACGT 2 cut(s) 47, 237
TasI AATT 8 cut(s) 65, 99, 135, 197, 205, 308, 495, 642
TatI WGTACW 1 cut(s) 822
TauI GCSGC 3 cut(s) 801, 804, 810
TfiI GAWTC 2 cut(s) 317, 428
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 2 cut(s) 481, 660
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 4 cut(s) 353, 449, 502, 804
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 22, 154, 497
TspRI CASTG 2 cut(s) 481, 660
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 2 cut(s) 99, 308
XbaI TCTAGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 2 cut(s) 752, 829
XmnI GAANNNNTTC 1 cut(s) 917
XspI CTAG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.