Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001031

Physical Location & Seq

Genomic Coordinates Forward (+)

7650420 .. 7653545

Gene Structure 3126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGACAGTTTCACTGCTGAACCTTCTAGTGATTCTAAGATCGATCGAAGATGAGGATAATATTGATGAATATAGGGAGCATAAGACATCGCAGAGGAAAAGAGCCCCCAAAAAGTCCAAGAAACCTGTATCTGAAAAAGAACCAGTTCGAAAGCATAAGAAGACCAAGGAAGCATCTGATCAGTCAACCAAAGACGCTCCCAAAAAGTTCTCCCATTCAACTCGTAGAAACAGAAGACAAGTGGACAAGTCTTTGCTTGAAATCCCAGAGGAGGAATTTGACCCCTGTAAATTCTCTCTCAAGGATCTCATTCGTCTAGCAGAGCATAAGGAGCTGTTAAAGATTAAGGAGGCAAGAAAATTGACAACTCGACAGCCCAATGAAAGTACAAACAGTGATTCTCACAAGGAAGGTTCTCACAATGAAGAGGAGTTCTATCCTTCAGAACATGGCACTGATGAAAACCAAGCCACTTATCATGTTAATTCCTCTCTACTCAATTATCAAACTTACATGGACAAAGCACCCACTGCAAGATGGTCTAAGCAGGACACAGAACTGTTCTATGAGGCTATTCAGCAGTGTGGATCAGATTTTACTATGATTCAAGAACTTTATTTTCCTAGTCGAACGCGTCATCAAGTCAAGTTAAAATTCAAGAAGGAAGAGCGTCAACATCCATTACGCATCTCAGAAGCCGTACTAAGTCGCTTGACTCATTCCACAGATCATTCCCAATTTACTTCATATATTGAGAAGCTGCAACAAGCTGCTCGGGCAAACAAGGAATCTAATGCAGATGAGTCAGTTGACATGACAGGCAAGGAGGAAGGACTAAGAGAGCAGACTCGGGATACTGATGAGGGAATGGAGAAACCCAAGTCGGAAGAAGTTCAAGATCAGGAAGCTGATGTTGCTGAAGTTCTAGATCAAGAAGCTGTTGCTGCTGAAGTGAGCAATCCCTTGAAGTCCGATGAAATTGATGATGATGATTTTACATGGTCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0001025 GO:0001156 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022607 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0065003 GO:0065004 GO:0070897 GO:0070898 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090576 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_7

Protein Analysis

337

Amino Acids

39.07

Weight (kDa)

5.46

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_7	PF15963	170 - 257	7.9e-27	Myb DNA-binding like
Myb_DNA-binding	PF00249	179 - 221	1.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39160 AT4G39160 AT4G39160
fragaria_vesca	FvH4_2g03360 FvH4_2g03400 FvH4_2g09510 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520
malus_domestica	MD10G1070200.v1.1
prunus_persica	Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1
pyrus_communis	pycom05g05400 pycom10g05580 pycom10g05590 pycom16g11070
rosa_chinensis	RchiOBHm_Chr5g0054461 RchiOBHm_Chr6g0265811 RchiOBHm_Chr6g0265821
rosa_laevigata	RLG00000014156 RLG00000034933
rosa_multiflora	Rmu_co8502449.1_g000001 Rmu_sc0000208.1_g000038 Rmu_sc0000208.1_g000039 Rmu_sc0005705.1_g000011
rosa_roxburghii	Rroxscaffold_1G00026430 Rroxscaffold_7G00202350 Rroxscaffold_7G00202360
rosa_rugosa	Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286300 Rorug05G0286400 Rorug06G0019900
rosa_samantha	Rh5AG356700 Rh5BG368400 Rh5BG368600 Rh5CG391800 Rh5DG382600 Rh6AG141900 Rh6AG142000 Rh6BG141800 Rh6BG141900 Rh6CG138400 Rh6CG138500 Rh6DG125500 Rh6DG125600
rosa_wichuraiana	Rw5G033520 Rw5G033690 Rw6G012260 Rw6G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	634
AclWI	GGATC	2 cut(s)	312, 595
AcsI	RAATTY	3 cut(s)	275, 290, 653
AcuI	CTGAAG	3 cut(s)	426, 939, 969
AfaI	GTAC	2 cut(s)	388, 702
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	6 cut(s)	219, 260, 608, 658, 896, 967
AluBI	AGCT	5 cut(s)	334, 760, 770, 908, 938
AluI	AGCT	5 cut(s)	334, 760, 770, 908, 938
AlwI	GGATC	2 cut(s)	312, 595
Ama87I	CYCGRG	2 cut(s)	774, 849
ApeKI	GCWGC	3 cut(s)	760, 770, 944
ApoI	RAATTY	3 cut(s)	275, 290, 653
Asp700I	GAANNNNTTC	2 cut(s)	144, 891
AspS9I	GGNCC	1 cut(s)	1002
AsuII	TTCGAA	1 cut(s)	148
AvaI	CYCGRG	2 cut(s)	774, 849
AvaII	GGWCC	1 cut(s)	1002
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	2 cut(s)	167, 241
BbvI	GCAGC	3 cut(s)	747, 757, 931
BccI	CCATC	1 cut(s)	531
BceAI	ACGGC	1 cut(s)	683
BciVI	GTATCC	1 cut(s)	847
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	4 cut(s)	26, 317, 624, 926
BfuI	GTATCC	1 cut(s)	847
BisI	GCNGC	3 cut(s)	761, 771, 945
BlsI	GCNGC	3 cut(s)	762, 772, 946
Bme18I	GGWCC	1 cut(s)	1002
BmeT110I	CYCGRG	2 cut(s)	774, 849
BmgT120I	GGNCC	1 cut(s)	1002
BmsI	GCATC	2 cut(s)	182, 696
BpiI	GAAGAC	2 cut(s)	167, 241
Bpu14I	TTCGAA	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	143
BseCI	ATCGAT	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	2 cut(s)	284, 443
BseXI	GCAGC	3 cut(s)	747, 757, 931
Bsh1236I	CGCG	1 cut(s)	634
Bsh1285I	CGRYCG	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	45
BsiHKCI	CYCGRG	2 cut(s)	774, 849
BslI	CCNNNNNNNGG	1 cut(s)	271
BsoBI	CYCGRG	2 cut(s)	774, 849
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	8 cut(s)	38, 42, 178, 304, 587, 727, 898, 928
BspCNI	CTCAG	1 cut(s)	704
BspDI	ATCGAT	1 cut(s)	41
BspFNI	CGCG	1 cut(s)	634
BspPI	GGATC	2 cut(s)	312, 595
BspQI	GCTCTTC	1 cut(s)	660
BspT104I	TTCGAA	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	8 cut(s)	38, 42, 178, 304, 587, 727, 898, 928
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	7, 395, 561
Bst6I	CTCTTC	2 cut(s)	420, 660
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstBI	TTCGAA	1 cut(s)	148
BstDEI	CTNAG	5 cut(s)	35, 543, 691, 704, 836
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	634
BstKTI	GATC	8 cut(s)	41, 45, 181, 307, 590, 730, 901, 931
BstMBI	GATC	8 cut(s)	38, 42, 178, 304, 587, 727, 898, 928
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 530, 776, 914, 944
BstUI	CGCG	1 cut(s)	634
BstV1I	GCAGC	3 cut(s)	747, 757, 931
BstV2I	GAAGAC	2 cut(s)	167, 241
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Bsu15I	ATCGAT	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	847
BsuTUI	ATCGAT	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	3 cut(s)	11, 528, 587
BtsIMutI	CAGTG	5 cut(s)	11, 400, 453, 528, 587
Cfr13I	GGNCC	1 cut(s)	1002
ClaI	ATCGAT	1 cut(s)	41
CseI	GACGC	3 cut(s)	203, 623, 659
Csp6I	GTAC	2 cut(s)	387, 701
CviAII	CATG	5 cut(s)	449, 479, 514, 814, 999
CviQI	GTAC	2 cut(s)	387, 701
DdeI	CTNAG	5 cut(s)	35, 543, 691, 704, 836
DpnI	GATC	8 cut(s)	40, 44, 180, 306, 589, 729, 900, 930
DpnII	GATC	8 cut(s)	38, 42, 178, 304, 587, 727, 898, 928
Eam1104I	CTCTTC	2 cut(s)	420, 660
EarI	CTCTTC	2 cut(s)	420, 660
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	1002
Eco57I	CTGAAG	3 cut(s)	426, 939, 969
Eco88I	CYCGRG	2 cut(s)	774, 849
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	452, 482, 517, 817, 1002
FatI	CATG	5 cut(s)	448, 478, 513, 813, 998
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	761, 771, 945
FokI	GGATG	1 cut(s)	663
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	761, 771, 945
FspBI	CTAG	4 cut(s)	26, 317, 624, 926
GluI	GCNGC	3 cut(s)	761, 771, 945
HgaI	GACGC	3 cut(s)	203, 623, 659
Hin1II	CATG	5 cut(s)	452, 482, 517, 817, 1002
HincII	GTYRAC	3 cut(s)	186, 674, 811
HindII	GTYRAC	3 cut(s)	186, 674, 811
HinfI	GANTC	7 cut(s)	31, 398, 604, 715, 788, 803, 847
Hpy166II	GTNNAC	4 cut(s)	186, 244, 674, 811
Hpy188I	TCNGA	8 cut(s)	133, 178, 445, 592, 694, 886, 973, 1006
Hpy188III	TCNNGA	7 cut(s)	608, 658, 851, 896, 902, 926, 932
Hpy8I	GTNNAC	4 cut(s)	186, 244, 674, 811
HpyAV	CCTTC	5 cut(s)	32, 404, 450, 655, 824
HpyCH4III	ACNGT	3 cut(s)	7, 395, 561
HpyCH4V	TGCA	3 cut(s)	533, 763, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 530, 776, 914, 944
HpyF3I	CTNAG	5 cut(s)	35, 543, 691, 704, 836
Hsp92II	CATG	5 cut(s)	452, 482, 517, 817, 1002
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	8 cut(s)	38, 42, 178, 304, 587, 727, 898, 928
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	3 cut(s)	76, 202, 331
LpnPI	CCDG	7 cut(s)	138, 156, 279, 298, 533, 804, 887
Lsp1109I	GCAGC	3 cut(s)	747, 757, 931
LweI	GCATC	2 cut(s)	182, 696
MaeI	CTAG	4 cut(s)	26, 317, 624, 926
MalI	GATC	8 cut(s)	40, 44, 180, 306, 589, 729, 900, 930
MboI	GATC	8 cut(s)	38, 42, 178, 304, 587, 727, 898, 928
MboII	GAAGA	6 cut(s)	59, 172, 246, 437, 677, 899
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	8 cut(s)	275, 290, 359, 484, 499, 653, 737, 978
MluI	ACGCGT	1 cut(s)	632
MlyI	GAGTC	3 cut(s)	709, 812, 841
MmeI	TCCRAC	1 cut(s)	864
MroXI	GAANNNNTTC	2 cut(s)	144, 891
MseI	TTAA	4 cut(s)	338, 345, 483, 650
MvnI	CGCG	1 cut(s)	634
MwoI	GCNNNNNNNGC	5 cut(s)	331, 530, 776, 914, 944
NdeII	GATC	8 cut(s)	38, 42, 178, 304, 587, 727, 898, 928
NlaIII	CATG	5 cut(s)	452, 482, 517, 817, 1002
NspV	TTCGAA	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	660
PdmI	GAANNNNTTC	2 cut(s)	144, 891
PfeI	GAWTC	4 cut(s)	31, 398, 604, 788
PkrI	GCNGC	3 cut(s)	762, 772, 946
Ple19I	CGATCG	1 cut(s)	45
PleI	GAGTC	3 cut(s)	709, 811, 841
PpsI	GAGTC	3 cut(s)	709, 811, 841
PspPI	GGNCC	1 cut(s)	1002
PsuI	RGATCY	1 cut(s)	304
PvuI	CGATCG	1 cut(s)	45
RsaI	GTAC	2 cut(s)	388, 702
RsaNI	GTAC	2 cut(s)	387, 701
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	4 cut(s)	338, 345, 483, 650
SatI	GCNGC	3 cut(s)	761, 771, 945
Sau3AI	GATC	8 cut(s)	38, 42, 178, 304, 587, 727, 898, 928
Sau96I	GGNCC	1 cut(s)	1002
SchI	GAGTC	3 cut(s)	709, 812, 841
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	8 cut(s)	24, 127, 336, 415, 762, 772, 910, 940
SfaNI	GCATC	2 cut(s)	182, 696
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	1 cut(s)	1002
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	8 cut(s)	275, 290, 359, 484, 499, 653, 737, 978
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	4 cut(s)	26, 317, 624, 926
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	7, 395, 561
TaqI	TCGA	5 cut(s)	41, 45, 148, 370, 628
TasI	AATT	8 cut(s)	275, 290, 359, 484, 499, 653, 737, 978
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	4 cut(s)	31, 398, 604, 788
Tru1I	TTAA	4 cut(s)	338, 345, 483, 650
Tru9I	TTAA	4 cut(s)	338, 345, 483, 650
TscAI	CASTG	5 cut(s)	18, 400, 460, 535, 587
TseI	GCWGC	3 cut(s)	760, 770, 944
TspDTI	ATGAA	6 cut(s)	81, 396, 438, 474, 735, 990
TspRI	CASTG	5 cut(s)	18, 400, 460, 535, 587
VpaK11BI	GGWCC	1 cut(s)	1002
XapI	RAATTY	3 cut(s)	275, 290, 653
XbaI	TCTAGA	1 cut(s)	925
XmnI	GAANNNNTTC	2 cut(s)	144, 891
XspI	CTAG	4 cut(s)	26, 317, 624, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.