pycom16g17950

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003699
Physical Location & Seq
Reverse (-)
14314484 .. 14315532
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGATCGCAACGTTCTTGAAGATACCATTTATAGATAAAGAGGTTGCTAACAATTCTTACTCACGCAAGATGGGACGCATTAATGGACTTAATCCACATAATAGTAGAAGGGACACAGCATTTGATTGGACAGATGTATATGAAAAGGAACCTAGTTTGTCTTCAGCATTAGAAAGTTCAGAGAACAAAAGCACTACTAGTGAGGGTTTGAGCCAGCATGAAGGTGCAGATACTGAGGAGCTTGGCTCTGGCAATCACAAATACAAAAAGGTCATTTATGGTGAGGACGCACTAAAAATATCCCCCACAGCGTCATATCCATGTCTGTGTCGGCAGCGTATCAGAGGCGTGTCCAAGCCGTTGACCAGTGTCTTGACCGTGTCCAATTCATGTCGGGGGCGTATCGGAGTGTCAAATTGTCCAATACTCTGGGTTTTTGGAGTGTCCGTGCAAGCTAGCACAGTATGCAAATGCTTTCAACTTGATGAATATGTGTGTCAGTCAGCTGAACATACACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

174

Amino Acids

19.11

Weight (kDa)

7.58

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 147
AgsI TTSAA 2 cut(s) 19, 479
AhlI ACTAGT 1 cut(s) 197
AluBI AGCT 3 cut(s) 241, 455, 506
AluI AGCT 3 cut(s) 241, 455, 506
AlwNI CAGNNNCTG 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 334
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AseI ATTAAT 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 293
AsuNHI GCTAGC 1 cut(s) 455
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 346
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 343
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 4 cut(s) 153, 198, 456, 520
BisI GCNGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 150
BmtI GCTAGC 1 cut(s) 459
BoxI GACNNNNGTC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bse1I ACTGG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 246
BslFI GGGAC 2 cut(s) 87, 125
BsmFI GGGAC 2 cut(s) 87, 125
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 150
BspOI GCTAGC 1 cut(s) 459
BsrI ACTGG 1 cut(s) 366
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 379, 463
BstAPI GCANNNNNTGC 1 cut(s) 465
BstC8I GCNNGC 3 cut(s) 215, 453, 457
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 465
BstPAI GACNNNNGTC 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 3 cut(s) 215, 453, 457
CaiI CAGNNNCTG 1 cut(s) 233
CseI GACGC 3 cut(s) 84, 296, 300
CviAII CATG 3 cut(s) 218, 321, 390
CviJI RGCY 6 cut(s) 213, 241, 246, 358, 455, 506
CviKI_1 RGCY 6 cut(s) 213, 241, 246, 358, 455, 506
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 147
FaeI CATG 3 cut(s) 221, 324, 393
FaqI GGGAC 2 cut(s) 87, 125
FatI CATG 3 cut(s) 217, 320, 389
Fnu4HI GCNGC 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 335
FspBI CTAG 4 cut(s) 153, 198, 456, 520
GluI GCNGC 1 cut(s) 335
HgaI GACGC 3 cut(s) 84, 296, 300
Hin1II CATG 3 cut(s) 221, 324, 393
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 3 cut(s) 181, 344, 407
Hpy188III TCNNGA 2 cut(s) 16, 373
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 2 cut(s) 102, 215
HpyCH4III ACNGT 2 cut(s) 379, 463
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 3 cut(s) 227, 451, 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 465
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 3 cut(s) 221, 324, 393
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 227, 234, 379, 415
Lsp1109I GCAGC 1 cut(s) 346
MaeI CTAG 4 cut(s) 153, 198, 456, 520
MaeII ACGT 1 cut(s) 11
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 31, 153
MluCI AATT 3 cut(s) 52, 385, 415
MnlI CCTC 5 cut(s) 34, 196, 229, 277, 338
MseI TTAA 2 cut(s) 81, 90
MslI CAYNNNNRTG 3 cut(s) 222, 319, 325
MspA1I CMGCKG 1 cut(s) 506
MwoI GCNNNNNNNGC 1 cut(s) 465
NdeII GATC 1 cut(s) 3
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 3 cut(s) 221, 324, 393
NlaIV GGNNCC 1 cut(s) 150
PflFI GACNNNGTC 1 cut(s) 379
PkrI GCNGC 1 cut(s) 336
PshAI GACNNNNGTC 1 cut(s) 368
PshBI ATTAAT 1 cut(s) 81
Psp1406I AACGTT 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 506
RseI CAYNNNNRTG 3 cut(s) 222, 319, 325
SaqAI TTAA 2 cut(s) 81, 90
SatI GCNGC 1 cut(s) 335
Sau3AI GATC 1 cut(s) 3
SetI ASST 8 cut(s) 14, 45, 154, 226, 243, 273, 457, 508
SmiMI CAYNNNNRTG 3 cut(s) 222, 319, 325
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 3 cut(s) 52, 385, 415
SspMI CTAG 4 cut(s) 153, 198, 456, 520
TaaI ACNGT 2 cut(s) 379, 463
TaiI ACGT 1 cut(s) 14
TasI AATT 3 cut(s) 52, 385, 415
Tru1I TTAA 2 cut(s) 81, 90
Tru9I TTAA 2 cut(s) 81, 90
TscAI CASTG 1 cut(s) 373
TseI GCWGC 1 cut(s) 334
TspDTI ATGAA 4 cut(s) 156, 234, 378, 501
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 1 cut(s) 373
Tth111I GACNNNGTC 1 cut(s) 379
VspI ATTAAT 1 cut(s) 81
XspI CTAG 4 cut(s) 153, 198, 456, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.