Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003699

Physical Location & Seq

Genomic Coordinates Forward (+)

14783637 .. 14792030

Gene Structure 8394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001370

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAGAGCGAAAAGGCCTATGATAAGATTGCAACAGCCTTGAAGATACCGTTTCTTAATGAAGAAGTTGCTGAGAATTCTTTCCCACGCAAGCTACAAGTGGGACGCATTGATGGAAACAATCCACAGAATAGTACAGAGGAAGCAGCATTTAACCGGACAGATGTGTATAGAAAGGACTCTAATTCGTCTTCTGTATTAGGAGATAAAGCCCGCTACCCTTTCCAAGAAGAGCTTCTGTCCACGGACGGTGGAGGAGGTTTGGTTAGGCCTTCACAACCGAGCACGAGGACGAAGATGGAGCAGGACGATAGTGGGTCAGTTGCTTCCATGTATGTTCTTGGACGATCTGCTGAAGAATGTGAAGCAAGAAGAGAAGAGGTTCGTCTGGATTTCGTAATAGCGGTCTTCTGCAATAGAGAGAGCGACAGAGTGAGGCCGATCCGAGAGAGGAAGAGCAGGAGACGGGAAGAGACGGCCAAATTGTCCGATCAAATCCTCCTCGAAATTCTGGAGAAGCTGTCTGAGCCGGATTGGAAGCCGAGCTCGATGGTCTGCAAGCGGTGGCTGAGCCTCCAGGGCCGGCTTGTGAGGTCCGTGAAGGTTGATCTGGTACTCGGTTCACTGATCTCAGACCGGAATTCCAGGATTTTGCTGAATCATGGTGGGTTTTCGGTGCCGGTTGCTTGTTCTGGTCACTGGGTTTTCGAAGCTGACTGTGATTTGGTCCCTAGTGAGGTTGTGGATAGAGGGCTTAGTGAGTTAGGGAGTGAGTGCCCCAATTTGAAGAAGCTAGTTGTGATTGGGGCTAGTGAGTTAGGGTGGCTAAGTATAGCAGAAGAGGTCCATCAAGAGTTGGAGTTGCACAAGTGCAATGACAATTTGCTGAGAGGGATAGCAACTTGTGAGAATTTGCAAGTGTTGAAGTTGGTGGCCAATGTGGAGGGGCTATGTGATTCTGTGGTTTCGGATATCGAGGAATTGGATCTCTTGGGGTTCGATCTGAAGAAGCTCGTCGGTGCTCAAATTGGAAGCGATCGGAGTGAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Remorin_C

Protein Analysis

351

Amino Acids

38.98

Weight (kDa)

5.01

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003699)

Species	Orthologous Gene IDs
malus_domestica	MD02G1274200.v1.1
pyrus_communis	pycom16g17950
rosa_chinensis	RchiOBHm_Chr6g0280461
rosa_laevigata	RLG00000001370 RLG00000009404 RLG00000030247
rosa_multiflora	Rmu_sc0001643.1_g000028
rosa_roxburghii	Rroxscaffold_1G00033380 Rroxscaffold_2G00103630 Rroxscaffold_2G00115110 Rroxscaffold_2G00121350 Rroxscaffold_2G00135900 Rroxscaffold_2G00147680 Rroxscaffold_2G00151240 Rroxscaffold_2G00154830 Rroxscaffold_3G00252750 Rroxscaffold_3G00265210 Rroxscaffold_4G00319380 Rroxscaffold_5G00336640 Rroxscaffold_5G00345850 Rroxscaffold_5G00362620 Rroxscaffold_6G00395390 Rroxscaffold_7G00213840
rosa_samantha	Rh2DG086400 Rh2DG086500 Rh3CG266000 Rh5AG437300 Rh5AG440100 Rh5DG008900 Rh5DG439400 Rh6BG460500 Rh6BG487900 Rh6CG493000 Rh7BG326500 Rh7CG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	676
AciI	CCGC	3 cut(s)	214, 404, 562
AclWI	GGATC	2 cut(s)	436, 993
AcoI	YGGCCR	2 cut(s)	477, 933
AcsI	RAATTY	4 cut(s)	76, 507, 640, 910
AcuI	CTGAAG	2 cut(s)	375, 1025
AfaI	GTAC	2 cut(s)	136, 615
AfiI	CCNNNNNNNGG	1 cut(s)	736
AgsI	TTSAA	3 cut(s)	43, 787, 925
AjnI	CCWGG	2 cut(s)	576, 644
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	7 cut(s)	94, 235, 520, 546, 713, 793, 1012
AluI	AGCT	7 cut(s)	94, 235, 520, 546, 713, 793, 1012
Alw21I	GWGCWC	3 cut(s)	287, 548, 1024
Alw26I	GTCTC	2 cut(s)	457, 467
AlwI	GGATC	2 cut(s)	436, 993
AoxI	GGCC	6 cut(s)	15, 269, 437, 477, 580, 933
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	4 cut(s)	76, 507, 640, 910
Asp700I	GAANNNNTTC	3 cut(s)	80, 234, 381
AspS9I	GGNCC	4 cut(s)	580, 594, 727, 844
AsuII	TTCGAA	1 cut(s)	708
AvaII	GGWCC	3 cut(s)	594, 727, 844
BaeGI	GKGCMC	1 cut(s)	779
BalI	TGGCCA	1 cut(s)	935
BanI	GGYRCC	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	548
BauI	CACGAG	1 cut(s)	286
BbsI	GAAGAC	2 cut(s)	183, 400
Bbv12I	GWGCWC	3 cut(s)	287, 548, 1024
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	4 cut(s)	107, 292, 544, 855
BceAI	ACGGC	1 cut(s)	492
BciT130I	CCWGG	2 cut(s)	578, 646
BcoDI	GTCTC	2 cut(s)	457, 467
BfaI	CTAG	3 cut(s)	732, 794, 810
BglI	GCCNNNNNGGC	1 cut(s)	579
BisI	GCNGC	1 cut(s)	147
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	578, 646
Bme18I	GGWCC	3 cut(s)	594, 727, 844
BmgT120I	GGNCC	4 cut(s)	580, 594, 727, 844
BmiI	GGNNCC	2 cut(s)	678, 729
BmrFI	CCNGG	2 cut(s)	578, 646
BmrI	ACTGGG	1 cut(s)	709
BmuI	ACTGGG	1 cut(s)	709
BpiI	GAAGAC	2 cut(s)	183, 400
BpmI	CTGGAG	2 cut(s)	533, 560
Bpu1102I	GCTNAGC	1 cut(s)	569
Bpu14I	TTCGAA	1 cut(s)	708
BsaJI	CCNNGG	2 cut(s)	243, 577
BsaWI	WCCGGW	2 cut(s)	156, 636
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 506, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	736
Bse118I	RCCGGY	2 cut(s)	582, 679
Bse1I	ACTGG	1 cut(s)	704
Bse3DI	GCAATG	1 cut(s)	880
BseBI	CCWGG	2 cut(s)	578, 646
BseDI	CCNNGG	2 cut(s)	243, 577
BseLI	CCNNNNNNNGG	1 cut(s)	736
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	5 cut(s)	63, 516, 560, 645, 878
BseNI	ACTGG	1 cut(s)	704
BseRI	GAGGAG	2 cut(s)	270, 491
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	1039
BshFI	GGCC	6 cut(s)	17, 271, 439, 479, 582, 935
BshNI	GGYRCC	1 cut(s)	676
BsiEI	CGRYCG	1 cut(s)	1039
BsiHKAI	GWGCWC	3 cut(s)	287, 548, 1024
BsiSI	CCGG	5 cut(s)	157, 530, 583, 637, 680
BslFI	GGGAC	2 cut(s)	117, 713
BslI	CCNNNNNNNGG	1 cut(s)	736
BsmAI	GTCTC	2 cut(s)	457, 467
BsmBI	CGTCTC	2 cut(s)	457, 467
BsmFI	GGGAC	2 cut(s)	117, 713
BsnI	GGCC	6 cut(s)	17, 271, 439, 479, 582, 935
Bsp119I	TTCGAA	1 cut(s)	708
Bsp1286I	GDGCHC	4 cut(s)	287, 548, 779, 1024
Bsp143I	GATC	8 cut(s)	347, 441, 490, 607, 627, 985, 1000, 1036
Bsp1720I	GCTNAGC	1 cut(s)	569
BspACI	CCGC	3 cut(s)	214, 404, 562
BspANI	GGCC	6 cut(s)	17, 271, 439, 479, 582, 935
BspCNI	CTCAG	5 cut(s)	64, 517, 561, 644, 879
BspLI	GGNNCC	2 cut(s)	678, 729
BspPI	GGATC	2 cut(s)	436, 993
BspQI	GCTCTTC	2 cut(s)	225, 449
BspT104I	TTCGAA	1 cut(s)	708
BspT107I	GGYRCC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	880
BsrFI	RCCGGY	2 cut(s)	582, 679
BsrI	ACTGG	1 cut(s)	704
BssAI	RCCGGY	2 cut(s)	582, 679
BssECI	CCNNGG	2 cut(s)	243, 577
BssMI	GATC	8 cut(s)	347, 441, 490, 607, 627, 985, 1000, 1036
BssSI	CACGAG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	578, 646
Bst4CI	ACNGT	3 cut(s)	51, 251, 719
Bst6I	CTCTTC	6 cut(s)	225, 367, 372, 449, 465, 834
BstBI	TTCGAA	1 cut(s)	708
BstC8I	GCNNGC	4 cut(s)	92, 214, 560, 584
BstDEI	CTNAG	7 cut(s)	72, 525, 569, 631, 755, 827, 887
BstDSI	CCRYGG	1 cut(s)	243
BstKTI	GATC	8 cut(s)	350, 444, 493, 610, 630, 988, 1003, 1039
BstMAI	GTCTC	2 cut(s)	457, 467
BstMBI	GATC	8 cut(s)	347, 441, 490, 607, 627, 985, 1000, 1036
BstMCI	CGRYCG	1 cut(s)	1039
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 579
BstNI	CCWGG	2 cut(s)	578, 646
BstSCI	CCNGG	2 cut(s)	576, 644
BstSLI	GKGCMC	1 cut(s)	779
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	2 cut(s)	183, 400
BstX2I	RGATCY	1 cut(s)	985
BstYI	RGATCY	1 cut(s)	985
BsuRI	GGCC	6 cut(s)	17, 271, 439, 479, 582, 935
BtgI	CCRYGG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	623, 697
Cac8I	GCNNGC	4 cut(s)	92, 214, 560, 584
Cfr10I	RCCGGY	2 cut(s)	582, 679
Cfr13I	GGNCC	4 cut(s)	580, 594, 727, 844
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	135, 614
CviAII	CATG	2 cut(s)	331, 662
CviQI	GTAC	2 cut(s)	135, 614
DdeI	CTNAG	7 cut(s)	72, 525, 569, 631, 755, 827, 887
DpnI	GATC	8 cut(s)	349, 443, 492, 609, 629, 987, 1002, 1038
DpnII	GATC	8 cut(s)	347, 441, 490, 607, 627, 985, 1000, 1036
EaeI	YGGCCR	2 cut(s)	477, 933
Eam1104I	CTCTTC	6 cut(s)	225, 367, 372, 449, 465, 834
EarI	CTCTTC	6 cut(s)	225, 367, 372, 449, 465, 834
Ecl136II	GAGCTC	1 cut(s)	546
Eco147I	AGGCCT	2 cut(s)	17, 271
Eco24I	GRGCYC	1 cut(s)	548
Eco32I	GATATC	1 cut(s)	973
Eco47I	GGWCC	3 cut(s)	594, 727, 844
Eco53kI	GAGCTC	1 cut(s)	546
Eco57I	CTGAAG	2 cut(s)	375, 1025
EcoICRI	GAGCTC	1 cut(s)	546
EcoRI	GAATTC	2 cut(s)	76, 640
EcoRII	CCWGG	2 cut(s)	576, 644
EcoRV	GATATC	1 cut(s)	973
EcoT38I	GRGCYC	1 cut(s)	548
Esp3I	CGTCTC	2 cut(s)	457, 467
FaeI	CATG	2 cut(s)	334, 665
FaiI	YATR	7 cut(s)	21, 171, 332, 336, 663, 833, 952
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	2 cut(s)	117, 713
FatI	CATG	2 cut(s)	330, 661
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	3 cut(s)	732, 794, 810
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	533, 560
HaeIII	GGCC	6 cut(s)	17, 271, 439, 479, 582, 935
HapII	CCGG	5 cut(s)	157, 530, 583, 637, 680
HgaI	GACGC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	334, 665
HinfI	GANTC	3 cut(s)	179, 658, 956
HpaII	CCGG	5 cut(s)	157, 530, 583, 637, 680
Hpy166II	GTNNAC	2 cut(s)	243, 623
Hpy188I	TCNGA	7 cut(s)	446, 490, 526, 634, 970, 1005, 1041
Hpy188III	TCNNGA	3 cut(s)	389, 512, 851
Hpy8I	GTNNAC	2 cut(s)	243, 623
Hpy99I	CGWCG	1 cut(s)	1019
HpyAV	CCTTC	2 cut(s)	282, 595
HpyCH4III	ACNGT	3 cut(s)	51, 251, 719
HpyCH4V	TGCA	6 cut(s)	32, 414, 558, 865, 873, 916
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 579
HpyF3I	CTNAG	7 cut(s)	72, 525, 569, 631, 755, 827, 887
Hsp92II	CATG	2 cut(s)	334, 665
KroI	GCCGGC	1 cut(s)	582
KroNI	GCCGGC	1 cut(s)	584
Kzo9I	GATC	8 cut(s)	347, 441, 490, 607, 627, 985, 1000, 1036
LguI	GCTCTTC	2 cut(s)	225, 449
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	1 cut(s)	158
MaeI	CTAG	3 cut(s)	732, 794, 810
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	8 cut(s)	349, 443, 492, 609, 629, 987, 1002, 1038
MboI	GATC	8 cut(s)	347, 441, 490, 607, 627, 985, 1000, 1036
MflI	RGATCY	1 cut(s)	985
MhlI	GDGCHC	4 cut(s)	287, 548, 779, 1024
MlsI	TGGCCA	1 cut(s)	935
MluNI	TGGCCA	1 cut(s)	935
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	837
Mox20I	TGGCCA	1 cut(s)	935
MroNI	GCCGGC	1 cut(s)	582
MroXI	GAANNNNTTC	3 cut(s)	80, 234, 381
MscI	TGGCCA	1 cut(s)	935
MseI	TTAA	2 cut(s)	57, 153
Msp20I	TGGCCA	1 cut(s)	935
MspI	CCGG	5 cut(s)	157, 530, 583, 637, 680
MspR9I	CCNGG	2 cut(s)	578, 646
MvaI	CCWGG	2 cut(s)	578, 646
MwoI	GCNNNNNNNGC	2 cut(s)	526, 579
NaeI	GCCGGC	1 cut(s)	584
NdeII	GATC	8 cut(s)	347, 441, 490, 607, 627, 985, 1000, 1036
NgoMIV	GCCGGC	1 cut(s)	582
NlaIII	CATG	2 cut(s)	334, 665
NlaIV	GGNNCC	2 cut(s)	678, 729
NmeAIII	GCCGAG	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	695
NspV	TTCGAA	1 cut(s)	708
PceI	AGGCCT	2 cut(s)	17, 271
PciSI	GCTCTTC	2 cut(s)	225, 449
PdiI	GCCGGC	1 cut(s)	584
PdmI	GAANNNNTTC	3 cut(s)	80, 234, 381
PfeI	GAWTC	2 cut(s)	658, 956
PfoI	TCCNGGA	1 cut(s)	644
PkrI	GCNGC	1 cut(s)	148
Ple19I	CGATCG	1 cut(s)	1039
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	576, 644
PspGI	CCWGG	2 cut(s)	576, 644
PspN4I	GGNNCC	2 cut(s)	678, 729
PspPI	GGNCC	4 cut(s)	580, 594, 727, 844
PsuI	RGATCY	1 cut(s)	985
PvuI	CGATCG	1 cut(s)	1039
RsaI	GTAC	2 cut(s)	136, 615
RsaNI	GTAC	2 cut(s)	135, 614
SacI	GAGCTC	1 cut(s)	548
SapI	GCTCTTC	2 cut(s)	225, 449
SaqAI	TTAA	2 cut(s)	57, 153
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	8 cut(s)	347, 441, 490, 607, 627, 985, 1000, 1036
Sau96I	GGNCC	4 cut(s)	580, 594, 727, 844
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	578, 646
SduI	GDGCHC	4 cut(s)	287, 548, 779, 1024
SfuI	TTCGAA	1 cut(s)	708
SinI	GGWCC	3 cut(s)	594, 727, 844
SseBI	AGGCCT	2 cut(s)	17, 271
SsiI	CCGC	3 cut(s)	214, 404, 562
SspMI	CTAG	3 cut(s)	732, 794, 810
SstI	GAGCTC	1 cut(s)	548
StuI	AGGCCT	2 cut(s)	17, 271
StyD4I	CCNGG	2 cut(s)	576, 644
TaaI	ACNGT	3 cut(s)	51, 251, 719
TaqI	TCGA	5 cut(s)	504, 548, 708, 975, 999
TatI	WGTACW	1 cut(s)	134
TfiI	GAWTC	2 cut(s)	658, 956
Tru1I	TTAA	2 cut(s)	57, 153
Tru9I	TTAA	2 cut(s)	57, 153
TscAI	CASTG	2 cut(s)	630, 704
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	2 cut(s)	260, 586
TspRI	CASTG	2 cut(s)	630, 704
VpaK11BI	GGWCC	3 cut(s)	594, 727, 844
XapI	RAATTY	4 cut(s)	76, 507, 640, 910
XmnI	GAANNNNTTC	3 cut(s)	80, 234, 381
XspI	CTAG	3 cut(s)	732, 794, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.