Rh6BG460500

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003699
Physical Location & Seq
Forward (+)
67128557 .. 67131442
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG460500.1

Sequence Viewer

Length: 426 bp
ATGGTTCTTCCTCTGAAAACCCACGACCCGACACGGATACCACCGGCTTTGCCCGCCTTCATCTCCGCCATGCAAGTACAAGTCACTTCGCGCGAAGCAAGTTACTTGAGGTTATCTGTTGTTTCTCAGGGAATTGGTAGGCTATCTTTGGTTTCTGCATCTGCAGCTCAATCATCTGCAACTGTAGTACAGGCTGGCACAAAAAGCTTACCTCTAAGCTGTATGTTTGTGCAGCTTAAGATTGCAACAGCCTTGAAGATACCGTTTCTTAATGAAGAAGTTGCTGAGAATTCTTTCCCATGCAAGCTACAAGTGGGACGCATTGATGGAAACAATCCACAAAATAGTAGAGAGGAAGCAGCATTTAACCGGACAGATGTGTATGGAAAGGACTCTAATTCGTCTTCTGTATTGGGGTATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

141

Amino Acids

15.13

Weight (kDa)

9.06

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 91, 93
AciI CCGC 2 cut(s) 54, 66
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 2 cut(s) 78, 189
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 5 cut(s) 167, 207, 219, 235, 307
AluI AGCT 5 cut(s) 167, 207, 219, 235, 307
ApeKI GCWGC 3 cut(s) 164, 232, 359
ApoI RAATTY 1 cut(s) 289
Asp700I GAANNNNTTC 1 cut(s) 293
AspLEI GCGC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 176, 244, 371
BccI CCATC 1 cut(s) 320
BciVI GTATCC 1 cut(s) 30
BfmI CTRYAG 2 cut(s) 162, 183
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 3 cut(s) 165, 233, 360
BlsI GCNGC 3 cut(s) 166, 234, 361
BmsI GCATC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 369
Bse118I RCCGGY 1 cut(s) 43
BseMII CTCAG 2 cut(s) 140, 276
BseXI GCAGC 3 cut(s) 176, 244, 371
BsgI GTGCAG 1 cut(s) 251
Bsh1236I CGCG 2 cut(s) 91, 93
BsiSI CCGG 2 cut(s) 44, 370
BslFI GGGAC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 330
BspACI CCGC 2 cut(s) 54, 66
BspCNI CTCAG 2 cut(s) 139, 277
BspFNI CGCG 2 cut(s) 91, 93
BspMAI CTGCAG 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 184, 264
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 54, 196, 305
BstDEI CTNAG 3 cut(s) 126, 215, 285
BstFNI CGCG 2 cut(s) 91, 93
BstHHI GCGC 1 cut(s) 93
BstMWI GCNNNNNNNGC 3 cut(s) 53, 164, 204
BstSFI CTRYAG 2 cut(s) 162, 183
BstUI CGCG 2 cut(s) 91, 93
BstV1I GCAGC 3 cut(s) 176, 244, 371
BstV2I GAAGAC 1 cut(s) 396
BsuI GTATCC 1 cut(s) 30
Cac8I GCNNGC 3 cut(s) 54, 196, 305
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 43
CseI GACGC 1 cut(s) 327
Csp6I GTAC 2 cut(s) 77, 188
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 2 cut(s) 70, 300
CviJI RGCY 9 cut(s) 47, 142, 167, 194, 207, 219, 235, 251, 307
CviKI_1 RGCY 9 cut(s) 47, 142, 167, 194, 207, 219, 235, 251, 307
CviQI GTAC 2 cut(s) 77, 188
DdeI CTNAG 3 cut(s) 126, 215, 285
EciI GGCGGA 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 289
FaeI CATG 2 cut(s) 73, 303
FaiI YATR 4 cut(s) 71, 224, 301, 384
FaqI GGGAC 1 cut(s) 330
FatI CATG 2 cut(s) 69, 299
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 165, 233, 360
Fsp4HI GCNGC 3 cut(s) 165, 233, 360
GlaI GCGC 1 cut(s) 92
GluI GCNGC 3 cut(s) 165, 233, 360
HapII CCGG 2 cut(s) 44, 370
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 73, 303
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 1 cut(s) 392
HpaII CCGG 2 cut(s) 44, 370
Hpy188I TCNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 184, 264
HpyCH4V TGCA 7 cut(s) 73, 158, 164, 179, 232, 245, 303
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 164, 204
HpyF3I CTNAG 3 cut(s) 126, 215, 285
Hsp92II CATG 2 cut(s) 73, 303
HspAI GCGC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 57, 113, 176, 180, 383
Lsp1109I GCAGC 3 cut(s) 176, 244, 371
LweI GCATC 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 82, 101
MboII GAAGA 3 cut(s) 268, 287, 396
MluCI AATT 3 cut(s) 132, 289, 397
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 4 cut(s) 21, 102, 222, 346
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 3 cut(s) 237, 270, 366
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 2 cut(s) 44, 370
MvnI CGCG 2 cut(s) 91, 93
MwoI GCNNNNNNNGC 3 cut(s) 53, 164, 204
NlaIII CATG 2 cut(s) 73, 303
NmuCI GTSAC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 166, 234, 361
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PstI CTGCAG 1 cut(s) 166
RsaI GTAC 2 cut(s) 78, 189
RsaNI GTAC 2 cut(s) 77, 188
SaqAI TTAA 3 cut(s) 237, 270, 366
SatI GCNGC 3 cut(s) 165, 233, 360
SchI GAGTC 1 cut(s) 386
SetI ASST 7 cut(s) 113, 169, 209, 214, 221, 237, 309
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 2 cut(s) 162, 183
SmlI CTYRAG 2 cut(s) 106, 236
SmoI CTYRAG 2 cut(s) 106, 236
Sse9I AATT 3 cut(s) 132, 289, 397
SsiI CCGC 2 cut(s) 54, 66
TaaI ACNGT 2 cut(s) 184, 264
TasI AATT 3 cut(s) 132, 289, 397
TatI WGTACW 2 cut(s) 76, 187
Tru1I TTAA 3 cut(s) 237, 270, 366
Tru9I TTAA 3 cut(s) 237, 270, 366
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 3 cut(s) 164, 232, 359
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 49, 288
TspGWI ACGGA 1 cut(s) 49
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.