No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD02G1274200.v1.1 |
| pyrus_communis | pycom16g17950 |
| rosa_chinensis | RchiOBHm_Chr6g0280461 |
| rosa_laevigata | RLG00000001370 RLG00000009404 RLG00000030247 |
| rosa_multiflora | Rmu_sc0001643.1_g000028 |
| rosa_roxburghii | Rroxscaffold_1G00033380 Rroxscaffold_2G00103630 Rroxscaffold_2G00115110 Rroxscaffold_2G00121350 Rroxscaffold_2G00135900 Rroxscaffold_2G00147680 Rroxscaffold_2G00151240 Rroxscaffold_2G00154830 Rroxscaffold_3G00252750 Rroxscaffold_3G00265210 Rroxscaffold_4G00319380 Rroxscaffold_5G00336640 Rroxscaffold_5G00345850 Rroxscaffold_5G00362620 Rroxscaffold_6G00395390 Rroxscaffold_7G00213840 |
| rosa_samantha | Rh2DG086400 Rh2DG086500 Rh3CG266000 Rh5AG437300 Rh5AG440100 Rh5DG008900 Rh5DG439400 Rh6BG460500 Rh6BG487900 Rh6CG493000 Rh7BG326500 Rh7CG102300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 201 |
| AarI | CACCTGC | 1 cut(s) | 135 |
| Acc36I | ACCTGC | 1 cut(s) | 135 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 45, 254 |
| AcuI | CTGAAG | 1 cut(s) | 168 |
| AgsI | TTSAA | 1 cut(s) | 239 |
| AluBI | AGCT | 2 cut(s) | 242, 277 |
| AluI | AGCT | 2 cut(s) | 242, 277 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApoI | RAATTY | 2 cut(s) | 45, 254 |
| AspLEI | GCGC | 1 cut(s) | 108 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 113, 147 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BfmI | CTRYAG | 1 cut(s) | 52 |
| BfoI | RGCGCY | 1 cut(s) | 109 |
| BfuAI | ACCTGC | 1 cut(s) | 135 |
| BmsI | GCATC | 2 cut(s) | 31, 139 |
| BpuEI | CTTGAG | 2 cut(s) | 56, 77 |
| BsaJI | CCNNGG | 1 cut(s) | 189 |
| BseDI | CCNNGG | 1 cut(s) | 189 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp143I | GATC | 2 cut(s) | 31, 147 |
| Bsp19I | CCATGG | 1 cut(s) | 189 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspMI | ACCTGC | 1 cut(s) | 135 |
| BssECI | CCNNGG | 1 cut(s) | 189 |
| BssMI | GATC | 2 cut(s) | 31, 147 |
| BssT1I | CCWWGG | 1 cut(s) | 189 |
| Bst4CI | ACNGT | 2 cut(s) | 53, 113 |
| Bst6I | CTCTTC | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 2 cut(s) | 68, 279 |
| BstDSI | CCRYGG | 1 cut(s) | 189 |
| BstH2I | RGCGCY | 1 cut(s) | 109 |
| BstHHI | GCGC | 1 cut(s) | 108 |
| BstKTI | GATC | 2 cut(s) | 34, 150 |
| BstMBI | GATC | 2 cut(s) | 31, 147 |
| BstNSI | RCATGY | 1 cut(s) | 70 |
| BstSFI | CTRYAG | 1 cut(s) | 52 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgI | CCRYGG | 1 cut(s) | 189 |
| BtgZI | GCGATG | 1 cut(s) | 116 |
| BtsIMutI | CAGTG | 1 cut(s) | 49 |
| BveI | ACCTGC | 1 cut(s) | 135 |
| Cac8I | GCNNGC | 2 cut(s) | 68, 279 |
| CfoI | GCGC | 1 cut(s) | 108 |
| CviAII | CATG | 2 cut(s) | 67, 190 |
| CviJI | RGCY | 6 cut(s) | 5, 83, 188, 205, 242, 277 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 83, 188, 205, 242, 277 |
| DpnI | GATC | 2 cut(s) | 33, 149 |
| DpnII | GATC | 2 cut(s) | 31, 147 |
| DraI | TTTAAA | 1 cut(s) | 117 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 164 |
| EarI | CTCTTC | 1 cut(s) | 164 |
| Eco130I | CCWWGG | 1 cut(s) | 189 |
| Eco57I | CTGAAG | 1 cut(s) | 168 |
| EcoT14I | CCWWGG | 1 cut(s) | 189 |
| ErhI | CCWWGG | 1 cut(s) | 189 |
| FaeI | CATG | 2 cut(s) | 70, 193 |
| FaiI | YATR | 4 cut(s) | 68, 176, 191, 201 |
| FatI | CATG | 2 cut(s) | 66, 189 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| GlaI | GCGC | 1 cut(s) | 107 |
| HaeII | RGCGCY | 1 cut(s) | 109 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HhaI | GCGC | 1 cut(s) | 108 |
| Hin1II | CATG | 2 cut(s) | 70, 193 |
| Hin6I | GCGC | 1 cut(s) | 106 |
| HinP1I | GCGC | 1 cut(s) | 106 |
| HindIII | AAGCTT | 1 cut(s) | 275 |
| HinfI | GANTC | 1 cut(s) | 16 |
| HphI | GGTGA | 1 cut(s) | 89 |
| Hpy188I | TCNGA | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 2 cut(s) | 94, 216 |
| HpyCH4III | ACNGT | 2 cut(s) | 53, 113 |
| HpyCH4V | TGCA | 2 cut(s) | 22, 130 |
| Hsp92II | CATG | 2 cut(s) | 70, 193 |
| HspAI | GCGC | 1 cut(s) | 106 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 2 cut(s) | 31, 147 |
| LmnI | GCTCC | 1 cut(s) | 286 |
| LpnPI | CCDG | 2 cut(s) | 140, 201 |
| LweI | GCATC | 2 cut(s) | 31, 139 |
| MalI | GATC | 2 cut(s) | 33, 149 |
| MboI | GATC | 2 cut(s) | 31, 147 |
| MboII | GAAGA | 4 cut(s) | 151, 174, 223, 256 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 5 cut(s) | 7, 45, 165, 196, 254 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 3 cut(s) | 73, 167, 278 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 116, 289 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| NcoI | CCATGG | 1 cut(s) | 189 |
| NdeII | GATC | 2 cut(s) | 31, 147 |
| NlaIII | CATG | 2 cut(s) | 70, 193 |
| NspI | RCATGY | 1 cut(s) | 70 |
| PaeI | GCATGC | 1 cut(s) | 70 |
| PaqCI | CACCTGC | 1 cut(s) | 135 |
| PfeI | GAWTC | 1 cut(s) | 16 |
| PsiI | TTATAA | 1 cut(s) | 201 |
| SaqAI | TTAA | 2 cut(s) | 116, 289 |
| Sau3AI | GATC | 2 cut(s) | 31, 147 |
| SetI | ASST | 4 cut(s) | 129, 159, 244, 279 |
| SfaNI | GCATC | 2 cut(s) | 31, 139 |
| SfcI | CTRYAG | 1 cut(s) | 52 |
| SgeI | CNNG | 9 cut(s) | 79, 85, 106, 139, 153, 202, 228, 251, 286 |
| SmlI | CTYRAG | 2 cut(s) | 71, 92 |
| SmoI | CTYRAG | 2 cut(s) | 71, 92 |
| SphI | GCATGC | 1 cut(s) | 70 |
| Sse9I | AATT | 5 cut(s) | 7, 45, 165, 196, 254 |
| StyI | CCWWGG | 1 cut(s) | 189 |
| TaaI | ACNGT | 2 cut(s) | 53, 113 |
| TasI | AATT | 5 cut(s) | 7, 45, 165, 196, 254 |
| TfiI | GAWTC | 1 cut(s) | 16 |
| Tru1I | TTAA | 2 cut(s) | 116, 289 |
| Tru9I | TTAA | 2 cut(s) | 116, 289 |
| TscAI | CASTG | 1 cut(s) | 56 |
| TspDTI | ATGAA | 1 cut(s) | 102 |
| TspRI | CASTG | 1 cut(s) | 56 |
| XapI | RAATTY | 2 cut(s) | 45, 254 |
| XceI | RCATGY | 1 cut(s) | 70 |