Rroxscaffold_6G00395390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003699
Physical Location & Seq
Forward (+)
16411432 .. 16423304
11873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395390.1

Sequence Viewer

Length: 663 bp
ATGGGCTATGATTCAGTTAGAGCTCTAGTCTGTCGGTCACCTTATGGGTCCTACAAAAGGTACACGTGGCTCTTACATTACCAAAATTATGTGAGCTTCGAGGATAACACATGTCAAAACACGATGGAGAATCAACAAGCACCAAACAGACGTGCCGGTTCGTCCCCTACTAAAGTCGAAGAATGCTCACCATGTGACATCACTCGTGGCCTAAATTTGATCAGGATCAAGTCTCTACAACCGTTGGTCAATCTTCTTTCTCAAATCATCAACATAACAAGAAGTTCACACTACAACCATTCGATTCAGATCAAGTGCTTGCCACCCTTGGATCAAATCAACGTCGGAGATCGAATAAGAGGAGATTCTTGTGAAAGAGCATCTATAGAGATTGCCACCGACAAGGACCTTCTTTTCTCAAAGAAAACGGTCGCTCTCTACCTCATCTCTTCCACTCTCCTCTCGAGATTGATTGCTCGCCTTAGTCGCCACCGAGTTGACTCACCAGAAAGCCTCGTCCTCCGCAGCAAGGAGCAGCTCACCATCCTTGTACCGCCGCCCTTCAAGTCCCTACTCCTCGTCCTCACCGATCAACAGCCGTGCTCTCATTTCCACGCTCCTCGCTCCCGGCTCGGCGGCGTCGTCTTGCAACTCCGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

25.0

Weight (kDa)

9.55

Isoelectric Point (pI)

69.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 654
AciI CCGC 4 cut(s) 523, 554, 557, 636
AclWI GGATC 2 cut(s) 233, 339
AcsI RAATTY 1 cut(s) 214
AcvI CACGTG 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 639
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 2 cut(s) 62, 552
AfiI CCNNNNNNNGG 2 cut(s) 57, 529
AflIII ACRYGT 2 cut(s) 63, 110
AgsI TTSAA 1 cut(s) 565
AjiI CACGTC 1 cut(s) 152
AluBI AGCT 3 cut(s) 23, 96, 538
AluI AGCT 3 cut(s) 23, 96, 538
Alw21I GWGCWC 2 cut(s) 25, 605
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 2 cut(s) 233, 339
Ama87I CYCGRG 1 cut(s) 463
Aor13HI TCCGGA 1 cut(s) 654
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 525, 535
ApoI RAATTY 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 48, 406
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 5 cut(s) 30, 180, 495, 532, 577
AvaI CYCGRG 1 cut(s) 463
AvaII GGWCC 2 cut(s) 48, 406
BanII GRGCYC 1 cut(s) 25
BauI CACGAG 1 cut(s) 204
BbrPI CACGTG 1 cut(s) 66
Bbv12I GWGCWC 2 cut(s) 25, 605
BbvI GCAGC 2 cut(s) 537, 547
BccI CCATC 2 cut(s) 118, 551
BceAI ACGGC 1 cut(s) 583
BclI TGATCA 1 cut(s) 219
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 384
BisI GCNGC 4 cut(s) 526, 536, 557, 637
BlsI GCNGC 4 cut(s) 527, 537, 558, 638
Bme1390I CCNGG 1 cut(s) 628
Bme18I GGWCC 2 cut(s) 48, 406
BmeT110I CYCGRG 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 48, 406
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 628
BmsI GCATC 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 66
BsaBI GATNNNNATC 2 cut(s) 224, 308
BsaHI GRCGYC 1 cut(s) 639
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 654
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 529
Bse118I RCCGGY 1 cut(s) 155
Bse8I GATNNNNATC 2 cut(s) 224, 308
BseAI TCCGGA 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 543
BseJI GATNNNNATC 2 cut(s) 224, 308
BseLI CCNNNNNNNGG 2 cut(s) 57, 529
BseRI GAGGAG 4 cut(s) 375, 449, 566, 609
BseXI GCAGC 2 cut(s) 537, 547
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 432
BsiHKAI GWGCWC 2 cut(s) 25, 605
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 3 cut(s) 156, 628, 655
BslFI GGGAC 2 cut(s) 148, 553
BslI CCNNNNNNNGG 2 cut(s) 57, 529
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 148, 553
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 25, 605
Bsp13I TCCGGA 1 cut(s) 654
Bsp143I GATC 6 cut(s) 219, 225, 309, 331, 349, 589
BspACI CCGC 4 cut(s) 523, 554, 557, 636
BspANI GGCC 1 cut(s) 210
BspEI TCCGGA 1 cut(s) 654
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 2 cut(s) 233, 339
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 6 cut(s) 219, 225, 309, 331, 349, 589
BssNI GRCGYC 1 cut(s) 639
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 243, 430
Bst6I CTCTTC 1 cut(s) 454
BstACI GRCGYC 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 320, 478
BstDEI CTNAG 1 cut(s) 482
BstEII GGTNACC 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 543
BstKTI GATC 6 cut(s) 222, 228, 312, 334, 352, 592
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 6 cut(s) 219, 225, 309, 331, 349, 589
BstMCI CGRYCG 1 cut(s) 432
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNSI RCATGY 1 cut(s) 114
BstPI GGTNACC 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 626
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 537, 547
BsuRI GGCC 1 cut(s) 210
BtrI CACGTC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 543
Cac8I GCNNGC 2 cut(s) 320, 478
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 48, 406
CseI GACGC 1 cut(s) 628
Csp6I GTAC 2 cut(s) 61, 551
CviAII CATG 2 cut(s) 111, 192
CviJI RGCY 9 cut(s) 6, 23, 70, 96, 210, 513, 538, 598, 631
CviKI_1 RGCY 9 cut(s) 6, 23, 70, 96, 210, 513, 538, 598, 631
CviQI GTAC 2 cut(s) 61, 551
DdeI CTNAG 1 cut(s) 482
DpnI GATC 6 cut(s) 221, 227, 311, 333, 351, 591
DpnII GATC 6 cut(s) 219, 225, 309, 331, 349, 589
DraIII CACNNNGTG 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 48, 406
Eco53kI GAGCTC 1 cut(s) 23
Eco72I CACGTG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 463
Eco91I GGTNACC 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 23
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoO109I RGGNCCY 2 cut(s) 48, 406
EcoO65I GGTNACC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 2 cut(s) 114, 195
FaiI YATR 7 cut(s) 9, 45, 90, 112, 193, 275, 386
FaqI GGGAC 2 cut(s) 148, 553
FatI CATG 2 cut(s) 110, 191
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 4 cut(s) 526, 536, 557, 637
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 4 cut(s) 526, 536, 557, 637
FspBI CTAG 1 cut(s) 26
GluI GCNGC 4 cut(s) 526, 536, 557, 637
HaeIII GGCC 1 cut(s) 210
HapII CCGG 3 cut(s) 156, 628, 655
HgaI GACGC 1 cut(s) 628
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 2 cut(s) 114, 195
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 5 cut(s) 11, 130, 304, 365, 500
HpaII CCGG 3 cut(s) 156, 628, 655
HphI GGTGA 5 cut(s) 30, 180, 495, 532, 577
Hpy166II GTNNAC 3 cut(s) 63, 287, 499
Hpy188I TCNGA 2 cut(s) 309, 347
Hpy188III TCNNGA 4 cut(s) 223, 463, 465, 655
Hpy8I GTNNAC 3 cut(s) 63, 287, 499
Hpy99I CGWCG 2 cut(s) 347, 644
HpyAV CCTTC 2 cut(s) 419, 571
HpyCH4III ACNGT 2 cut(s) 243, 430
HpyCH4IV ACGT 3 cut(s) 65, 151, 342
HpyCH4V TGCA 1 cut(s) 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 3 cut(s) 65, 151, 342
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 2 cut(s) 114, 195
Kpn2I TCCGGA 1 cut(s) 654
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 6 cut(s) 219, 225, 309, 331, 349, 589
LmnI GCTCC 3 cut(s) 532, 622, 629
LpnPI CCDG 4 cut(s) 169, 208, 519, 641
Lsp1109I GCAGC 2 cut(s) 537, 547
LweI GCATC 1 cut(s) 389
MaeI CTAG 1 cut(s) 26
MaeII ACGT 3 cut(s) 65, 151, 342
MaeIII GTNAC 2 cut(s) 36, 194
MalI GATC 6 cut(s) 221, 227, 311, 333, 351, 591
MboI GATC 6 cut(s) 219, 225, 309, 331, 349, 589
MboII GAAGA 3 cut(s) 191, 245, 441
MhlI GDGCHC 2 cut(s) 25, 605
MluCI AATT 2 cut(s) 85, 214
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 325
MroI TCCGGA 1 cut(s) 654
MspI CCGG 3 cut(s) 156, 628, 655
MspR9I CCNGG 1 cut(s) 628
Mva1269I GAATGC 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 486
NciI CCSGG 1 cut(s) 628
NdeII GATC 6 cut(s) 219, 225, 309, 331, 349, 589
NlaIII CATG 2 cut(s) 114, 195
NlaIV GGNNCC 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 612
NmuCI GTSAC 2 cut(s) 36, 194
NspI RCATGY 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 463
PciI ACATGT 1 cut(s) 110
PcsI WCGNNNNNNNCGW 2 cut(s) 585, 639
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 4 cut(s) 11, 130, 304, 365
PkrI GCNGC 4 cut(s) 527, 537, 558, 638
PleI GAGTC 1 cut(s) 494
PmaCI CACGTG 1 cut(s) 66
PmlI CACGTG 1 cut(s) 66
PpsI GAGTC 1 cut(s) 494
Ppu21I YACGTR 1 cut(s) 66
PpuMI RGGWCCY 2 cut(s) 48, 406
PscI ACATGT 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 25
Psp5II RGGWCCY 2 cut(s) 48, 406
PspCI CACGTG 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 48, 406
PspPPI RGGWCCY 2 cut(s) 48, 406
RsaI GTAC 2 cut(s) 62, 552
RsaNI GTAC 2 cut(s) 61, 551
SacI GAGCTC 1 cut(s) 25
SatI GCNGC 4 cut(s) 526, 536, 557, 637
Sau3AI GATC 6 cut(s) 219, 225, 309, 331, 349, 589
Sau96I GGNCC 2 cut(s) 48, 406
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 1 cut(s) 628
SduI GDGCHC 2 cut(s) 25, 605
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 384
Sfr274I CTCGAG 1 cut(s) 463
SinI GGWCC 2 cut(s) 48, 406
SlaI CTCGAG 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
Sse9I AATT 2 cut(s) 85, 214
SsiI CCGC 4 cut(s) 523, 554, 557, 636
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 626
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 243, 430
TaiI ACGT 3 cut(s) 68, 154, 345
TaqI TCGA 5 cut(s) 99, 177, 302, 352, 464
TaqII GACCGA 1 cut(s) 24
TasI AATT 2 cut(s) 85, 214
TauI GCSGC 2 cut(s) 559, 639
TfiI GAWTC 4 cut(s) 11, 130, 304, 365
TseFI GTSAC 2 cut(s) 36, 194
TseI GCWGC 2 cut(s) 525, 535
Tsp45I GTSAC 2 cut(s) 36, 194
VpaK11BI GGWCC 2 cut(s) 48, 406
XagI CCTNNNNNAGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 114
XhoI CTCGAG 1 cut(s) 463
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.