Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001643.1

Orthogroup ID

OG0003699

Physical Location & Seq

Genomic Coordinates Forward (+)

145630 .. 147094

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001643.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggctgctctaacgcccacctccagccttgggccaccacctccatcaagtctccaccaccatcagagacaatctcaaccgtcatgggtctccgagaagcccattactgccgttgaagctgaacagaaggttggcgagttggtcagagtcggatggcttgtgaggtttgtgaaggtgaaagactggagcattgtggaattgggtcgggttatttcaaggtttttgatcttgagccaggttgatatggtactcgattcactgaactcggaccggaatttcgggattttgcttaatcatggtgggttttcgatgccggttgcttgttccggtcactgggttttcgaagctgactgtgatttggttcctggtgaggttgtggatagagggcttagtgagttagggagtgggtgccccaatttgaagaagctagttgcgattgggtctaatgagttagggtggctaagtatagcagaagagtgtccaactcttcaagagttggagttgcacaagtgcaatgacaatttgctgagagggattacagcctgtgagaatgtgcaagtgttgaagttggtggccaatgtggaggggctatgtggttctgtgggggcaataaattcagacacggaatcgggacaccagttcagtagccggattcgagattcgagattcgggctaccggtcgcaggattctggtcaccggtcgcaggattccagtcaccagagtcggcggcaggccactggtcaccggagcccggcaaggtattcgacgacttctctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Remorin_C

Protein Analysis

260

Amino Acids

28.14

Weight (kDa)

5.24

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003699)

Species	Orthologous Gene IDs
malus_domestica	MD02G1274200.v1.1
pyrus_communis	pycom16g17950
rosa_chinensis	RchiOBHm_Chr6g0280461
rosa_laevigata	RLG00000001370 RLG00000009404 RLG00000030247
rosa_multiflora	Rmu_sc0001643.1_g000028
rosa_roxburghii	Rroxscaffold_1G00033380 Rroxscaffold_2G00103630 Rroxscaffold_2G00115110 Rroxscaffold_2G00121350 Rroxscaffold_2G00135900 Rroxscaffold_2G00147680 Rroxscaffold_2G00151240 Rroxscaffold_2G00154830 Rroxscaffold_3G00252750 Rroxscaffold_3G00265210 Rroxscaffold_4G00319380 Rroxscaffold_5G00336640 Rroxscaffold_5G00345850 Rroxscaffold_5G00362620 Rroxscaffold_6G00395390 Rroxscaffold_7G00213840
rosa_samantha	Rh2DG086400 Rh2DG086500 Rh3CG266000 Rh5AG437300 Rh5AG440100 Rh5DG008900 Rh5DG439400 Rh6BG460500 Rh6BG487900 Rh6CG493000 Rh7BG326500 Rh7CG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	408
AciI	CCGC	1 cut(s)	728
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	2 cut(s)	274, 613
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	5 cut(s)	30, 333, 683, 704, 752
AgeI	ACCGGT	2 cut(s)	676, 697
AgsI	TTSAA	5 cut(s)	116, 216, 421, 491, 565
AjnI	CCWGG	2 cut(s)	234, 364
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	3 cut(s)	119, 347, 427
AluI	AGCT	3 cut(s)	119, 347, 427
Alw26I	GTCTC	3 cut(s)	56, 61, 94
AoxI	GGCC	3 cut(s)	32, 573, 733
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	274, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AsiGI	ACCGGT	2 cut(s)	676, 697
AspS9I	GGNCC	2 cut(s)	32, 268
AsuC2I	CCSGG	1 cut(s)	753
AsuHPI	GGTGA	5 cut(s)	187, 380, 687, 708, 735
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	575
BanI	GGYRCC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	753
BccI	CCATC	3 cut(s)	52, 69, 147
BceAI	ACGGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BciT130I	CCWGG	2 cut(s)	236, 366
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	3 cut(s)	56, 61, 94
BfaI	CTAG	1 cut(s)	428
BisI	GCNGC	2 cut(s)	6, 729
BlsI	GCNGC	2 cut(s)	7, 730
Bme1390I	CCNGG	3 cut(s)	236, 366, 753
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	32, 268
BmiI	GGNNCC	3 cut(s)	363, 410, 750
BmrFI	CCNGG	3 cut(s)	236, 366, 753
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	343
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpmI	CTGGAG	2 cut(s)	7, 205
Bpu14I	TTCGAA	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	753
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	5 cut(s)	270, 326, 676, 697, 745
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 333, 683, 704, 752
Bse118I	RCCGGY	3 cut(s)	313, 676, 697
Bse1I	ACTGG	5 cut(s)	188, 338, 637, 712, 743
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	236, 366
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	5 cut(s)	30, 333, 683, 704, 752
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	5 cut(s)	188, 338, 637, 712, 743
BseSI	GKGCMC	1 cut(s)	413
Bsh1285I	CGRYCG	2 cut(s)	681, 702
BshFI	GGCC	3 cut(s)	34, 575, 735
BshNI	GGYRCC	1 cut(s)	408
BshTI	ACCGGT	2 cut(s)	676, 697
BsiEI	CGRYCG	2 cut(s)	681, 702
BsiSI	CCGG	8 cut(s)	271, 314, 327, 649, 677, 698, 746, 753
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	5 cut(s)	30, 333, 683, 704, 752
BsmAI	GTCTC	3 cut(s)	56, 61, 94
BsmFI	GGGAC	1 cut(s)	645
BsnI	GGCC	3 cut(s)	34, 575, 735
Bso31I	GGTCTC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	413, 753
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	3 cut(s)	34, 575, 735
BspCNI	CTCAG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	363, 410, 750
BspT104I	TTCGAA	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	408
BspTNI	GGTCTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	520
BsrFI	RCCGGY	3 cut(s)	313, 676, 697
BsrI	ACTGG	5 cut(s)	188, 338, 637, 712, 743
BssAI	RCCGGY	3 cut(s)	313, 676, 697
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	2 cut(s)	236, 366
Bst4CI	ACNGT	2 cut(s)	81, 353
Bst6I	CTCTTC	2 cut(s)	468, 492
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	3 cut(s)	389, 461, 527
BstEII	GGTNACC	2 cut(s)	693, 741
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	3 cut(s)	56, 61, 94
BstMBI	GATC	1 cut(s)	225
BstMCI	CGRYCG	2 cut(s)	681, 702
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	236, 366
BstPI	GGTNACC	2 cut(s)	693, 741
BstSCI	CCNGG	3 cut(s)	234, 364, 751
BstSLI	GKGCMC	1 cut(s)	413
BsuRI	GGCC	3 cut(s)	34, 575, 735
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	3 cut(s)	257, 331, 736
Cac8I	GCNNGC	1 cut(s)	733
Cfr10I	RCCGGY	3 cut(s)	313, 676, 697
Cfr13I	GGNCC	2 cut(s)	32, 268
CpoI	CGGWCCG	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	248
CspAI	ACCGGT	2 cut(s)	676, 697
CspI	CGGWCCG	1 cut(s)	268
CviAII	CATG	2 cut(s)	84, 296
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	3 cut(s)	389, 461, 527
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	468, 492
EarI	CTCTTC	2 cut(s)	468, 492
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	753
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	268
Eco91I	GGTNACC	2 cut(s)	693, 741
EcoO65I	GGTNACC	2 cut(s)	693, 741
EcoRII	CCWGG	2 cut(s)	234, 364
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	87, 299
FaiI	YATR	5 cut(s)	85, 245, 297, 467, 592
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	2 cut(s)	83, 295
Fnu4HI	GCNGC	2 cut(s)	6, 729
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	2 cut(s)	6, 729
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	2 cut(s)	6, 729
GsuI	CTGGAG	2 cut(s)	7, 205
HaeIII	GGCC	3 cut(s)	34, 575, 735
HapII	CCGG	8 cut(s)	271, 314, 327, 649, 677, 698, 746, 753
Hin1II	CATG	2 cut(s)	87, 299
HinfI	GANTC	9 cut(s)	147, 254, 626, 652, 659, 666, 687, 708, 722
HpaII	CCGG	8 cut(s)	271, 314, 327, 649, 677, 698, 746, 753
HphI	GGTGA	5 cut(s)	187, 380, 687, 708, 735
Hpy188I	TCNGA	6 cut(s)	66, 94, 146, 152, 268, 619
Hpy188III	TCNNGA	6 cut(s)	229, 280, 491, 630, 656, 663
Hpy99I	CGWCG	1 cut(s)	770
HpyAV	CCTTC	2 cut(s)	121, 166
HpyCH4III	ACNGT	2 cut(s)	81, 353
HpyCH4V	TGCA	3 cut(s)	505, 513, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	3 cut(s)	389, 461, 527
Hsp92II	CATG	2 cut(s)	87, 299
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	186, 748
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	4 cut(s)	329, 693, 714, 741
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	3 cut(s)	433, 479, 485
MhlI	GDGCHC	2 cut(s)	413, 753
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	5 cut(s)	197, 274, 415, 520, 613
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	2 cut(s)	156, 731
MmeI	TCCRAC	3 cut(s)	130, 477, 506
MnlI	CCTC	7 cut(s)	31, 51, 156, 364, 377, 524, 577
Mox20I	TGGCCA	1 cut(s)	575
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	575
MspI	CCGG	8 cut(s)	271, 314, 327, 649, 677, 698, 746, 753
MspR9I	CCNGG	3 cut(s)	236, 366, 753
MvaI	CCWGG	2 cut(s)	236, 366
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	753
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	2 cut(s)	87, 299
NlaIV	GGNNCC	3 cut(s)	363, 410, 750
NmuCI	GTSAC	4 cut(s)	329, 693, 714, 741
NspV	TTCGAA	1 cut(s)	342
PfeI	GAWTC	7 cut(s)	254, 626, 652, 659, 666, 687, 708
PinAI	ACCGGT	2 cut(s)	676, 697
PkrI	GCNGC	2 cut(s)	7, 730
PleI	GAGTC	2 cut(s)	155, 730
PpsI	GAGTC	2 cut(s)	155, 730
Psp6I	CCWGG	2 cut(s)	234, 364
PspEI	GGTNACC	2 cut(s)	693, 741
PspGI	CCWGG	2 cut(s)	234, 364
PspN4I	GGNNCC	3 cut(s)	363, 410, 750
PspPI	GGNCC	2 cut(s)	32, 268
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
Rsr2I	CGGWCCG	1 cut(s)	268
RsrII	CGGWCCG	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	6, 729
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	2 cut(s)	32, 268
SchI	GAGTC	2 cut(s)	156, 731
ScrFI	CCNGG	3 cut(s)	236, 366, 753
SduI	GDGCHC	2 cut(s)	413, 753
SfaNI	GCATC	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	5 cut(s)	197, 274, 415, 520, 613
SsiI	CCGC	1 cut(s)	728
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	3 cut(s)	234, 364, 751
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	81, 353
TaqI	TCGA	6 cut(s)	252, 308, 342, 655, 662, 765
TasI	AATT	5 cut(s)	197, 274, 415, 520, 613
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	7 cut(s)	254, 626, 652, 659, 666, 687, 708
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	3 cut(s)	264, 338, 743
TseFI	GTSAC	4 cut(s)	329, 693, 714, 741
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	4 cut(s)	329, 693, 714, 741
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	3 cut(s)	264, 338, 743
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	274, 613
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.