Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003699

Physical Location & Seq

Genomic Coordinates Reverse (-)

58354425 .. 58356693

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030247

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCCGAAGCAGACCCGTGGCCCTTTTGTTCAACCCTGAGCAAATCCCATTGTCTCTCACCCAAAATTGTAACAACCCAAATACTCAAAACACCCAATTCCTCAATTTCATTTCCTCAAGCTCGGAAAACGACTTTGCCGGGTCACCCGATGGTTCTTCCTCTGAAAACCCACGACCCGACACGGATACCACGGGCTTTGCCCGCCTTCATCTCCGCCATGCAAGTACAAGTTGCTTTGCGCGAAGCTACTTACTTGAGGTTATCTGTTGTTTCTCATGGAATTGGTAGGCTATCTTTGGTTGCTGCATCTGCAGCTCAATCAGCTGCAACTGTAGTACAGGCTGGCACAAAAAGCTTACCTCTAAGTTCCTTATATGTGGAATTTGTAACATTTAAAGTGAAGCATATTGTTTGTCTTTTAGGTGCTTGGCAGGGGTGGAGAGGAGATAAATTTTTTGCAACTGGAAGGAATATAAGCGCAGATACAGATACACACCACCCTCACAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

172

Amino Acids

18.58

Weight (kDa)

10.03

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003699)

Species	Orthologous Gene IDs
malus_domestica	MD02G1274200.v1.1
pyrus_communis	pycom16g17950
rosa_chinensis	RchiOBHm_Chr6g0280461
rosa_laevigata	RLG00000001370 RLG00000009404 RLG00000030247
rosa_multiflora	Rmu_sc0001643.1_g000028
rosa_roxburghii	Rroxscaffold_1G00033380 Rroxscaffold_2G00103630 Rroxscaffold_2G00115110 Rroxscaffold_2G00121350 Rroxscaffold_2G00135900 Rroxscaffold_2G00147680 Rroxscaffold_2G00151240 Rroxscaffold_2G00154830 Rroxscaffold_3G00252750 Rroxscaffold_3G00265210 Rroxscaffold_4G00319380 Rroxscaffold_5G00336640 Rroxscaffold_5G00345850 Rroxscaffold_5G00362620 Rroxscaffold_6G00395390 Rroxscaffold_7G00213840
rosa_samantha	Rh2DG086400 Rh2DG086500 Rh3CG266000 Rh5AG437300 Rh5AG440100 Rh5DG008900 Rh5DG439400 Rh6BG460500 Rh6BG487900 Rh6CG493000 Rh7BG326500 Rh7CG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	243
AciI	CCGC	2 cut(s)	204, 216
AcsI	RAATTY	2 cut(s)	383, 452
AfaI	GTAC	2 cut(s)	228, 339
AgsI	TTSAA	1 cut(s)	33
AluBI	AGCT	5 cut(s)	122, 248, 317, 326, 357
AluI	AGCT	5 cut(s)	122, 248, 317, 326, 357
Alw26I	GTCTC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	305, 314, 326
ApoI	RAATTY	2 cut(s)	383, 452
AspLEI	GCGC	2 cut(s)	243, 482
AspS9I	GGNCC	1 cut(s)	21
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	51, 137
BbvI	GCAGC	3 cut(s)	292, 313, 326
BccI	CCATC	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	59
BfmI	CTRYAG	2 cut(s)	312, 333
BfuI	GTATCC	1 cut(s)	180
BisI	GCNGC	3 cut(s)	306, 315, 327
BlsI	GCNGC	3 cut(s)	307, 316, 328
Bme1390I	CCNGG	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	38
BpuEI	CTTGAG	2 cut(s)	102, 277
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	17, 191
Bse1I	ACTGG	1 cut(s)	469
BseDI	CCNNGG	2 cut(s)	17, 191
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	292, 313, 326
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	22
BspACI	CCGC	2 cut(s)	204, 216
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	17, 191
Bst4CI	ACNGT	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	204, 346
BstDEI	CTNAG	2 cut(s)	38, 365
BstDSI	CCRYGG	2 cut(s)	17, 191
BstEII	GGTNACC	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	243, 482
BstMAI	GTCTC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 311, 314, 323, 354
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	2 cut(s)	312, 333
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	3 cut(s)	292, 313, 326
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	22
BtgI	CCRYGG	2 cut(s)	17, 191
Cac8I	GCNNGC	2 cut(s)	204, 346
CfoI	GCGC	2 cut(s)	243, 482
Cfr13I	GGNCC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	227, 338
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	2 cut(s)	220, 278
CviJI	RGCY	9 cut(s)	22, 122, 197, 248, 292, 317, 326, 344, 357
CviKI_1	RGCY	9 cut(s)	22, 122, 197, 248, 292, 317, 326, 344, 357
CviQI	GTAC	2 cut(s)	227, 338
DdeI	CTNAG	2 cut(s)	38, 365
DraI	TTTAAA	1 cut(s)	397
EciI	GGCGGA	1 cut(s)	205
Eco91I	GGTNACC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	143
FaeI	CATG	2 cut(s)	223, 281
FaiI	YATR	7 cut(s)	221, 279, 376, 378, 408, 476, 514
FatI	CATG	2 cut(s)	219, 277
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	306, 315, 327
Fsp4HI	GCNGC	3 cut(s)	306, 315, 327
GlaI	GCGC	2 cut(s)	242, 481
GluI	GCNGC	3 cut(s)	306, 315, 327
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	140
HhaI	GCGC	2 cut(s)	243, 482
Hin1II	CATG	2 cut(s)	223, 281
Hin6I	GCGC	2 cut(s)	241, 480
HinP1I	GCGC	2 cut(s)	241, 480
HindIII	AAGCTT	1 cut(s)	355
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	2 cut(s)	51, 137
Hpy188I	TCNGA	3 cut(s)	7, 126, 165
HpyAV	CCTTC	2 cut(s)	217, 462
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	5 cut(s)	223, 308, 314, 329, 461
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 311, 314, 323, 354
HpyF3I	CTNAG	2 cut(s)	38, 365
Hsp92II	CATG	2 cut(s)	223, 281
HspAI	GCGC	2 cut(s)	241, 480
LpnPI	CCDG	6 cut(s)	50, 153, 326, 330, 419, 450
Lsp1109I	GCAGC	3 cut(s)	292, 313, 326
LweI	GCATC	1 cut(s)	317
MaeIII	GTNAC	3 cut(s)	70, 143, 388
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	6 cut(s)	66, 97, 105, 282, 383, 452
MnlI	CCTC	7 cut(s)	112, 126, 171, 252, 372, 437, 513
MseI	TTAA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	5 cut(s)	203, 311, 314, 323, 354
NciI	CCSGG	1 cut(s)	141
NlaIII	CATG	2 cut(s)	223, 281
NmuCI	GTSAC	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	307, 316, 328
PspEI	GGTNACC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	228, 339
RsaNI	GTAC	2 cut(s)	227, 338
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	3 cut(s)	306, 315, 327
Sau96I	GGNCC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	8 cut(s)	124, 250, 263, 319, 328, 359, 364, 427
SfaNI	GCATC	1 cut(s)	317
SfcI	CTRYAG	2 cut(s)	312, 333
SmlI	CTYRAG	2 cut(s)	117, 256
SmoI	CTYRAG	2 cut(s)	117, 256
Sse9I	AATT	6 cut(s)	66, 97, 105, 282, 383, 452
SsiI	CCGC	2 cut(s)	204, 216
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	334
TasI	AATT	6 cut(s)	66, 97, 105, 282, 383, 452
TatI	WGTACW	2 cut(s)	226, 337
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	3 cut(s)	305, 314, 326
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	99, 199
TspGWI	ACGGA	1 cut(s)	199
XapI	RAATTY	2 cut(s)	383, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.